Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g02424 AAAAAAAAAAGACCGAAATGTCCGAAATGCTGGGCAGTAGTAAAACATAGATTCATTTCCCCCTCTTTGATTTTCCACTTTTTGACAAATGGGAAATGGAATAGAGCCAAGCCAATGAAGAAGCTGTAATGCAAAATAAAGTAAACAAGAAGGGCAAACAAAATCCAAAATTGACTCATTTGAAGGGTTGAGGCAGCATCAGCATCAGCCTCAGCCAAAGCCAAAGCCAAAGCCAAAGCCAAGCCATCAAATTAAAGCCTCTTCCAAGAACTCAATCATGGAGAAGGAGGACCCATCTTCTTCTTTTATCTGTTTGTTCTCTCAAAATCTCATCCTCTCATAAACCCCAATTAAGTCCACACAGAGGAACCCACCTTCTTTCTTGGGTCCTCCCCCACCCCATCCCCACACCCAGACATGGCAGACCATAACAACAACAACAACAACAACAACAAACCATCAGTTGCAGCAGCTTCATCAACTCCAATTACACCATCCTCAGATATCAAAGACTTCAGTATCATTATTTCTAACAAAGATCAAAACAACAACAACAACAAACAATTGGCTCCTAAACGTACCTCCAATAAAGACCGTCATAAAAAAGTTGATGGCCGTGGTCGTAGGATCCGTATGCCTGCTCTCTGTGCTGCTCGTGTCTTTCAATTGACTCGTGAATTAGGCCATAAGACTGATGGCGAAACCATCCAGTGGCTTCTTCAACAAGCTGAGCCTTCTATAATCGCCGCCACTGGCTCCGGTACCATCCCTGCCTCTGCCCTCCACGCCGCTGGTGTTTCTCTCTCCGACCATGATTCCTCTGTTTCCGTCTCTGCTACCTTAACCCCTAAAATCGATGCTGTTCCCAGGCCGAATTGGGCGATGATGGGAACTAATTTGAACAGATCTCACATGGCGACAACTGGATTTTGGCCGTCTTTAGGTGGAATTGGGACTGGATTCGTCAGTGAGAATCCGGGTTCGATTATGCCTAAATTTGGGTTCCATGGATTTGAATTTCAGGGGATGAATTTGGGATCGGTGAATTTTCCGACGATAATTGGGAATCAACATCAACAAATACCAGGGTTGGAGTTAGGGCTTTCGCAGGATGGGAATAATCTGAGAGGGATGTTGAATCCGCCTTCTTATTCACAAATTTATCACCAAATAGGGCAAAATCGGGACTCATCTGCACCGCCATTGCAGCAGGAACAAGCTCCTGAGAAAGACGATTCTCAAGAATCGAGATGATGATGATGATGAAGAAAGAATTGAGGATTTGGGTTTTCCGATCGAAACAGTTTCGGATTTCTAGGTCTAAAATTAGCACTAAATTGAAAGAGAGGGCAAAATGAAGAAGACAAAGATTCAAGATTGCTTCATAAATTTCAGTGTGTGTTTTCATTCTTCAAATTCAGGTGGGAAGTTTTGAGGAGAAAGTGGTTTTTATTGCAAGATTGATTGACTTTCCTTTCTTCAATTTTGAGGTGTGTGTATGATTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTCTAATTTTCCTTTATTTATATAAATAATTTCTAGAAAAGAAAAAAATGATTGTAATATTAATTTTTATGAAGTTGATGTGGAAATTTCTTCCATCATTATTGCATTAAATGCATGGTAAGGTAAGAAGAAACAACAATCTATCCATTGGAAAATTGTGGTCAATATGGAGAGCAAATACCAATTCCATCAACCTCCATAATTGTCCAATAATTTGAATGATCAGATATTAGTACCCCTTTTTTTTTCACA 1796 39.76 MADHNNNNNNNNKPSVAAASSTPITPSSDIKDFSIIISNKDQNNNNNKQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAAGVSLSDHDSSVSVSATLTPKIDAVPRPNWAMMGTNLNRSHMATTGFWPSLGGIGTGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQHQQIPGLELGLSQDGNNLRGMLNPPSYSQIYHQIGQNRDSSAPPLQQEQAPEKDDSQESR 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 76496895 76499388 - XM_039020263.1 Bhi12g02424 54236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g02424 278 MobiDBLite consensus disorder prediction 1 25 - -
Bhi12g02424 278 MobiDBLite consensus disorder prediction 39 69 - -
Bhi12g02424 278 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 27 278 IPR005333 GO:0003700
Bhi12g02424 278 MobiDBLite consensus disorder prediction 253 278 - -
Bhi12g02424 278 Pfam TCP family transcription factor 55 148 IPR017887 -
Bhi12g02424 278 ProSiteProfiles TCP domain profile. 57 111 IPR017887 -
Bhi12g02424 278 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 27 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g02424 - - - cmo:103498864 465.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02113 Bhi-Chr1:48447363 Bhi12g02424 Bhi-Chr12:76496895 1.50E-69 dispersed
Bhi01g02114 Bhi-Chr1:48447363 Bhi12g02424 Bhi-Chr12:76496895 1.50E-69 dispersed
Bhi07g01576 Bhi-Chr7:45137800 Bhi12g02424 Bhi-Chr12:76496895 1.67E-36 dispersed
Bhi08g02014 Bhi-Chr8:57971965 Bhi12g02424 Bhi-Chr12:76496895 2.00E-37 dispersed
Bhi12g01178 Bhi-Chr12:34894260 Bhi12g02424 Bhi-Chr12:76496895 4.83E-33 dispersed
Bhi12g02424 Bhi-Chr12:76496895 Bhi02g00330 Bhi-Chr2:6136733 3.08E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi12g01178 . 43 260 TCP Transcription Factor Family AT5G23280 64.0 7.9e-66 248.1
Bhi07g01106 . 39 261 TCP Transcription Factor Family AT5G23280 62.4 2.3e-65 246.5
Bhi07g01576 . 57 156 TCP Transcription Factor Family AT3G47620 89.2 8.3e-43 172.6
Bhi08g02014 . 38 138 TCP Transcription Factor Family AT3G47620 82.2 2.5e-39 161.0
Bhi01g02112 . 37 277 TCP Transcription Factor Family AT3G27010 58.1 9.0e-59 224.9
Bhi01g02113 . 37 277 TCP Transcription Factor Family AT3G27010 58.1 9.0e-59 224.9
Bhi01g02114 . 37 277 TCP Transcription Factor Family AT3G27010 58.1 9.0e-59 224.9
Bhi12g02424 . 26 254 TCP Transcription Factor Family AT3G27010 52.4 7.4e-53 205.3
Bhi12g01178 . 31 261 TCP Transcription Factor Family AT5G08330 60.9 1.1e-64 244.2
Bhi07g01106 . 9 259 TCP Transcription Factor Family AT5G08330 56.8 1.4e-64 243.8
Bhi02g00091 CCT 35 136 TCP Transcription Factor Family AT5G60970 73.8 7.0e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012904 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2747 PF03634 TCP 5.50E-31 No_clan Bhi TF