Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g02449 TTTTAAACTTCTAATCCTTTGCTATTTTTTGTTTGTTTTTGTATGTGGTTAATCTTTAGTACGGTTATTCAATTTATGGGGATTGTGACTTTTACTTGTGGAGACAGAAATTGGAATTAGTTTATCATTTCATGGGGTGAAAAGTAAAATCATGATGCTGCAGAATTTGGTTTCAGGTGTTAGTGAAGTAGACAGTTCAATGTTTGCTGTAATGGTGGATTTTAATCTTGGTTATAGTGAACTACTTTTTCCAAAATTTGACTATAGATCTTAAAGGAAAGTGGCTAAAGTGGATATTTCCTGTAGATGGTCAATATTCCTTGTTTTTTGGAACACAAAATTTGATCTAGTTGAGGAAATTTTGGGAGTATTGATTATATTACTTGTGTGCAATGATTTTGAAGGGGAAAGAGAAGCTTGTATGATTTCTGTACCACTTTGCTTTTTGTATTGTATTTACTTTAGCCTTAAATTGTACCTTGTTATCCCTGTTGAACCTTTCTTGTTCATCGTTTGGCGTCTGGCTGCTAAAGGTGTAAAGTTAAACTGGGAAGGATTCTGATTGAGGTATTTTCTGTTGGAAATGTGTGAAAGAGCACCTTGAGAATCAGTCTTGTTTGGAGAAAAGAAAAGCATTCCGCAAATCGCTACTGTAGAAGGAAACTGAGAGTGTGTTGGAGTAGAGAAAGTTGCTTGATGTATTGGAAACTCAGGGGCATTGGTAATATGGGCGAAAGGTCTATGGACAACATGAAAGGAACTAGAGTTGCTTTGATCGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCTCCTGGAAGTGGAGCCCAAGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCTGACCTAAGCAAATGCAGGGACTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCAAAAGTAACCATTTCCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCATTCGGTAATCAATTTCTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAATGCACCTCTTTCTGGTGGCGACTCACAGTTCGACTTTACTGACAGAAGAAAAAGTATGTTGCCCGGGTCGTTGTCTTCTGATTACAAAGAAAAACAACTAGCAATCTCTTGCATCCCTATAGGATTGCTTCCCAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCAACGGTGGGAATGTTCAGAAAGTGCTCGGAAACGGTTCGAATCGGTTCTTTGACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCCCCTCAGCCCATTTCATCCACAGCGACGGTCTTGGCTTGGAGAGTGACCCCATTAATTCTGGTTTGGTGTCGGACGGTAGCAGCGATGCCAACATCCAGTGCTACTCAACGTTCCAGGACGGACCTGATGGATCATCTGTTGATTTATTCAGGTTTTGAAACATGAAAGTTGGGTCATTCTTCTAGGTTCAGAGATAGATTTCTCTAGTATGCTTATTCTCCAGGATTTAACTCAGCCACTATCAATCTTCCAGTCTCTGCTTGCTTTTTTTTTGTTATGTGAATTTTAAGGAATGCTTTTGTTTTGTGTGTGAAATGTCTCTTTCAATATTTTTACTTTGTTCAGACTTCAAGTTTTGAATATTAATTTTCTGGCTCTATTTATTCCC 1913 40.41 MYWKLRGIGNMGERSMDNMKGTRVALIESSSSRLMKRSRAPGSGAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTISGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQFLSASNDVSSSWIGMIKPENNAPLSGGDSQFDFTDRRKSMLPGSLSSDYKEKQLAISCIPIGLLPKSSDTQPFLNVGSSNGGNVQKVLGNGSNRFFDSDCALSLLSTPVEPGEINLSSMSQSNLIPSAHFIHSDGLGLESDPINSGLVSDGSSDANIQCYSTFQDGPDGSSVDLFRF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 76971532 76974371 + XM_039020227.1 Bhi12g02449 54261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g02449 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 4 321 - -
Bhi12g02449 328 Pfam SBP domain 50 123 IPR004333 GO:0003677
Bhi12g02449 328 Gene3D - 41 111 IPR036893 GO:0003677|GO:0005634
Bhi12g02449 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 4 321 IPR044817 GO:0003677
Bhi12g02449 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677|GO:0005634
Bhi12g02449 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g02449 - - - csv:101217032 645.195
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g02447 Bhi-Chr12:76970987 Bhi12g02449 Bhi-Chr12:76971532 0 dispersed
Bhi12g02448 Bhi-Chr12:76970988 Bhi12g02449 Bhi-Chr12:76971532 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g01308 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01309 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01310 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01308 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi11g01309 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi11g01310 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi12g02448 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi12g02449 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi12g02447 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi01g02096 . 159 262 SBP-box Gene Family AT5G50570 64.4 2.5e-36 150.6
Bhi09g02766 . 1 1063 SBP-box Gene Family AT1G20980 50.1 1.1e-265 914.1
Bhi09g02766 . 1 725 SBP-box Gene Family AT1G76580 50.2 2.5e-170 596.7
Bhi11g01308 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01309 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01310 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01308 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi11g01309 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi11g01310 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi12g02448 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi12g02449 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi12g02447 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi01g02096 . 159 262 SBP-box Gene Family AT5G50570 64.4 2.5e-36 150.6
Bhi12g02448 . 15 163 SBP-box Gene Family AT5G50670 55.3 2.8e-40 163.7
Bhi12g02449 . 15 163 SBP-box Gene Family AT5G50670 55.3 2.8e-40 163.7
Bhi12g02447 . 15 163 SBP-box Gene Family AT5G50670 55.3 2.8e-40 163.7
Bhi01g02096 . 159 262 SBP-box Gene Family AT5G50670 64.4 2.5e-36 150.6
Bhi09g02766 . 1 1063 SBP-box Gene Family AT1G20980 50.1 1.1e-265 914.1
Bhi09g02766 . 1 725 SBP-box Gene Family AT1G76580 50.2 2.5e-170 596.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2750 PF03110 SBP 5.60E-30 No_clan Bhi TF