Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g02456 ATTCCAATTGTAAGCTTCTGACCATATTTGATTTTTCAGTGGCCGAAACCGAAGCGCACGGCAAGACGGAAGTTCCATCTGTTGAATGTGGAAGTCAATTCTCCATCTCCGATTTTCAGCTCCTCGGTGATCCGGAGAAGGATTTTCCGACGTCGACGCCGCCGGTGAATTGTGCTCCTTCTGCAGAAGCGCCAGTTGAAGCTCTTCTCTGCAATTCGGGAGGATTCTGAAATGTTTTCTTTAACTTATTCTCACTGAAAAAGCTGACGCGATCTGTACATGATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAATCCCGTTGGCTGAAGCCTCCAGAAGTGCTCTTTATTTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAGCTGGAGGAAAAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAGGCGTTAAATTGCTATTATGCACATGGAGAATACAACCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCATGTGACCACATTGTTCTTGTACACTACAGAGATATCAGTGAGGGAAGGTCTGGGACGGAAAGTGTTCCACAATTGTCTCCAGCATCAGTTTCTACTTCTGGTTCCTATTCGTCCCAAAATCTTGGTCCGGAATATCAACTGACTTCATTGAGCCCAGGGTCTGTAGAAGTTACTTCAGACACTGGCAACCATACTATTTGGTCAAATGGCGTGGATGGACAGTATGAAGTATCAGAATTTAAAAGTTCAAACGATCGTGATGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAGTTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTCCATTTTATGGTGATGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCACTTTTCAGTGCTTCAACATTCAGAAAATGCTGTCCATGATAATACTTATACATCGTTTGAGATGCAAGCTTTTCCTATGCTAGGAAGCTGCACTTCTACAGAATATTCTTCACCACTAGACACTCAGGATGTTAATTCCAAATACAACATACCATTTCTTAAACAAGAACAAGGAAATTCGTTTGAAGTTGATACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCGCCAAATAGTACCTGAGCAGGGTTCTGCCACTGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTTCAGAATCTCCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAAGATGGGGTACTTTGTTGCGAAGCACCGCCACACCTTGCTGGGAAGGTTGCTTTCTGCATTACATCTGGCAATCAGGAACCCTGCAGTGAAGTCAGAGAGTTTGAATATAAAATGAATGTTTGCAGTCATTGCCAGTCACATTCAACTGGAGCTACGAAGAGTCGAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAATGCAGAAATCTGACAAGTTAGATTCTGAAGTTAGGAGCAATAATTTGAGAGCTGGTGATGATGAATGGAGTTCTTTGATAGAGGCTCTACTAGTTGGTAGTGAAACTCCTTCTGGTACCATCGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCGACTCTGGCTTTCTTGGCAACAGAATGATAGGCATGATCTAGCAGGCTGTTCCTTGTCCAAGAAAGAACAAGGCGTTATACACATGATTGCTGGCTTGGGCTATGTGTGGGCACTAAACCCGATTCTCAGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGGAGCATCAGCTGGTGCTGTGACTGATCCTAGTTCACAAGATCCAGATGGTAAAACTGCAGGGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAAGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAAGTGAGCTTTCCAAAGGCTCTGCTGAGTTAGAAGCAGAAATGACAGTAAATTGCATTTCAAATGGGAACCTCTCTTCCGCTGAGGACTATATCCCTCTAAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCAGCCCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGGAAACGACAGCAGAAGGAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATCGATCCAAATGACATACATGGGCTCTTAGCTATGTCAAAGTTAAATTTTTCTAATCGGCGTGATTATAATGCTGCTGCATTATCTATACAAAAGAAGTATCGAGGTTGGAAAGGCCGTAAAGAGTTTTTATCACTACGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGATATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGGTTTCGTAGTGAAATAGGATCCATGGATGAAAGTGAAGATGACGATATTATAAAGGTGTTTCGAAAACAAAAAGTGGAAGGAACCATTGATGAGGCTGTTTCTCGAGTGCTGTCCATGGTTGACTCTCCGGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCCAAGGCTGAACTCGATGGTGCTGGTAACAAATCTGCAGCATCGACTTCTCTTACCAATGTTTCTGGAATGGAAGATTGTAATCAATATCCTAAGTTTGCATAGGAGCTACTTGGTGATCCTAATTAACCTAACATTCACTGATTTTATCTCTCTGTGCTAATTACCCCTAGTGGTTATAATTTGTAAGCAAATGTTTACTTCATATCGTCTCTGTAAATGATTTGTATTATTGCTGTAAATGGCTTGGTTGTAACTACATAATTAGATTGATGCAATTAAATTAATCCCTAAGAGCATATTCTCTTTTTTGTTTTT 3165 41.55 MMNAGYDINDLYREAQSRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEYNPNFQRRSYWMLDQSCDHIVLVHYRDISEGRSGTESVPQLSPASVSTSGSYSSQNLGPEYQLTSLSPGSVEVTSDTGNHTIWSNGVDGQYEVSEFKSSNDRDVSQALRRIEEQLSLNEDSLKDIGPFYGDEEGSNSNLIDYYEMSNEDHFSVLQHSENAVHDNTYTSFEMQAFPMLGSCTSTEYSSPLDTQDVNSKYNIPFLKQEQGNSFEVDTSLIVAQVQKFTIRQIVPEQGSATESTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQDGVLCCEAPPHLAGKVAFCITSGNQEPCSEVREFEYKMNVCSHCQSHSTGATKSREELLLLVRLVQLLLSDSSMQKSDKLDSEVRSNNLRAGDDEWSSLIEALLVGSETPSGTIDWLLQELLKDKLRLWLSWQQNDRHDLAGCSLSKKEQGVIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQDPDGKTAGSIADIHGHKGLAGYLSEVALTSHLSSLTFEESELSKGSAELEAEMTVNCISNGNLSSAEDYIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIHGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLSLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEIGSMDESEDDDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLEGFREAKAELDGAGNKSAASTSLTNVSGMEDCNQYPKFA 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 77363557 77403049 + XM_039018642.1 Bhi12g02456 54268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g02456 890 Gene3D - 729 776 - -
Bhi12g02456 890 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 252 876 - -
Bhi12g02456 890 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 255 - -
Bhi12g02456 890 Pfam CG-1 domain 14 127 IPR005559 GO:0003677
Bhi12g02456 890 ProSiteProfiles Ankyrin repeat profile. 554 586 IPR002110 GO:0005515
Bhi12g02456 890 Gene3D - 414 619 IPR036770 -
Bhi12g02456 890 SUPERFAMILY E set domains 326 409 IPR014756 -
Bhi12g02456 890 Gene3D Immunoglobulins 320 413 IPR013783 -
Bhi12g02456 890 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 2 255 - -
Bhi12g02456 890 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 252 876 - -
Bhi12g02456 890 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 674 780 IPR027417 -
Bhi12g02456 890 Pfam IQ calmodulin-binding motif 754 773 IPR000048 GO:0005515
Bhi12g02456 890 Pfam IQ calmodulin-binding motif 731 749 IPR000048 GO:0005515
Bhi12g02456 890 MobiDBLite consensus disorder prediction 132 171 - -
Bhi12g02456 890 ProSiteProfiles Ankyrin repeat region circular profile. 554 580 - -
Bhi12g02456 890 ProSiteProfiles IQ motif profile. 729 758 IPR000048 GO:0005515
Bhi12g02456 890 Pfam Ankyrin repeats (many copies) 542 575 IPR002110 GO:0005515
Bhi12g02456 890 CDD IPT 326 410 - -
Bhi12g02456 890 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677
Bhi12g02456 890 ProSiteProfiles IQ motif profile. 672 700 IPR000048 GO:0005515
Bhi12g02456 890 Pfam IPT/TIG domain 326 408 IPR002909 -
Bhi12g02456 890 ProSiteProfiles IQ motif profile. 752 776 IPR000048 GO:0005515
Bhi12g02456 890 MobiDBLite consensus disorder prediction 133 171 - -
Bhi12g02456 890 SMART CG_1_2 11 129 IPR005559 GO:0003677
Bhi12g02456 890 SMART ANK_2a 554 583 IPR002110 GO:0005515
Bhi12g02456 890 SMART iq_5 751 773 IPR000048 GO:0005515
Bhi12g02456 890 SMART iq_5 728 750 IPR000048 GO:0005515
Bhi12g02456 890 SMART iq_5 671 693 IPR000048 GO:0005515
Bhi12g02456 890 SUPERFAMILY Ankyrin repeat 523 615 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g02456 K21596 CAMTA; calmodulin-binding transcription activator - csv:101222798 1499.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g02456 Bhi-Chr12:77363557 Bhi12g02458 Bhi-Chr12:77363557 0 dispersed
Bhi12g02456 Bhi-Chr12:77363557 Bhi12g02457 Bhi-Chr12:77363557 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi05g00866 . 1 1098 CAMTA Transcription Factor Family AT5G64220 52.6 2.2e-271 932.9
Bhi05g00865 . 1 1097 CAMTA Transcription Factor Family AT5G64220 52.6 3.2e-270 929.1
Bhi12g02456 . 6 861 CAMTA Transcription Factor Family AT1G67310 51.2 9.8e-248 854.4
Bhi12g02457 . 6 861 CAMTA Transcription Factor Family AT1G67310 51.2 9.8e-248 854.4
Bhi12g02458 . 6 861 CAMTA Transcription Factor Family AT1G67310 51.2 9.8e-248 854.4
Bhi12g01914 . 34 904 CAMTA Transcription Factor Family AT3G16940 55.6 8.4e-266 914.1
Bhi12g01913 . 34 902 CAMTA Transcription Factor Family AT3G16940 55.8 1.4e-265 913.3
Bhi12g01914 . 11 630 CAMTA Transcription Factor Family AT4G16150 53.6 2.5e-194 676.8
Bhi12g01913 . 11 628 CAMTA Transcription Factor Family AT4G16150 53.6 8.2e-193 671.8
Bhi05g00866 . 1 1098 CAMTA Transcription Factor Family AT5G64220 52.6 2.2e-271 932.9
Bhi05g00865 . 1 1097 CAMTA Transcription Factor Family AT5G64220 52.6 3.2e-270 929.1
Bhi12g02456 . 6 861 CAMTA Transcription Factor Family AT1G67310 51.2 9.8e-248 854.4
Bhi12g02457 . 6 861 CAMTA Transcription Factor Family AT1G67310 51.2 9.8e-248 854.4
Bhi12g02458 . 6 861 CAMTA Transcription Factor Family AT1G67310 51.2 9.8e-248 854.4
Bhi12g01914 . 11 630 CAMTA Transcription Factor Family AT4G16150 53.6 2.5e-194 676.8
Bhi12g01913 . 11 628 CAMTA Transcription Factor Family AT4G16150 53.6 8.2e-193 671.8
Bhi12g01914 . 34 904 CAMTA Transcription Factor Family AT3G16940 55.6 8.4e-266 914.1
Bhi12g01913 . 34 902 CAMTA Transcription Factor Family AT3G16940 55.8 1.4e-265 913.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2752 PF03859 CG-1 1.30E-47 No_clan Bhi TF