Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g02463 ATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCATTCTCATCCTCCTCCGCCACCGCCGCCACCGCCGCCGCAACCGCCGCAGCAACTGCCTCTCACCCTAGCTTCATCTCGCCAGAGTTCGACTTTTGCACAGGTGGTGCTTCAAAGATATTGATGACAACTCTGCAGATGATTATTACGGTCTTGTAATGGTGGCTGGTAGATCAGAAAATTGTAAGATGACAGAAGCTTGCATGCTTCCACCTGTAAAAAAACCAAGAAAGGAGCGAAACCGAGGAAAATTGTCTGGATCAGCCGCAACAACTGAGGTGATGGAAGAAATCTGGAAAGATTTCCCAGAGGACCTTTTTGAAGCTGTCATTGCGAGACTTCCCATTGCTACATTCTTCCGCTTTCGTGCTGTTTGCCAAAAATGGAACTCACTGCTAAACTCTGAAAGTTTCTCTTTTTACTGTGCTCAAGTTCCACAAACCACCCCTTGGTTCTACACCATTACTCACGACATGGTTAGTTCAGGAGCCATATATGACCCTTCTTTGAAAAAATGGCACCATCCATCCATTTCATCTCAGCCTATTAAATCACTTGTCCTGCCAGTTGCTTCTGCTGGAGGTCTTGTGTGTTTGCTTGATTTCAGTCATAGGAACTTCTATGTATGCAATCCTCTAACTCAATCTCTTAAAGAGTTGCCAGCTAGATCAGTTGAAGTGTGGTCTCGTGTTGCGGTAGGGATGACTCTAAATGGTAGTTCGACCAGTGGGGGCTACAATATCTTATGTCTGGGCTGTGATGGAGAGTATGAGATTTATGACTCTGTTAAAAACTCCTGGATTCACCCCGGGCGCATGCCTTCTAGTATTAAGCTTCCATTATCCCTGAATTTCCGCTCACAAGCTGTCTCCATTGACAGCACACTTTACTTCATGCGTTCAGACCCCGAAGGGATTGTGTCCTACAACATGGTCACTGGGGTTTGGAAGCAGTTTATAGTTCCCGCCCCGCTACATCTGACAGACCATACGCTTGCAGAGTATGGGGGCCGGATCATGCTCGTGGGGTTGTTGACAAAAAACGCAGCCACGTGCGTGTGCATATGGGAGCTGCAGAAGATGACTCTCTTATGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGAGTTTTATGGAAAGCACGTTAGAATGAATTGCTTGGGAAACAAAGGGTTGCTCATGCTGTCCTTGAGATCAAGGCAAACAAACAGATTGGTTACGTACGATGTGACGAGCAAGGAATGGTCGAAAGTTCCTGGGGTGCCTCGCGGGAGGAAGCGACAATGGATAACATCAGGCACTGCATTTTACCCTTGCCCGACTGCTGTGGCTTGACTTTGCTTCTGGTTGGCTATGCAGACAATGTTCGAGGTGAGGAGTTCTCTCATTGGAAAAAGCTTGTTAACTTGTAAGCTTTATTTCGTTCCACGCAAGCCTTTTTTGCTGCTGATTTTCTTCATCTTGTAGTTTTGTATTTTGATCAGTTAAGTTAGATTTTTCCCAAATTAGACTTTGTGGTTCTGGTGTAAAAGCCTGTGTACAAAATAACTTAAAATGTCAAAAAGACAAATTTAAGAATTTCCTCTCTGTGCCCAGAATTGTATAATATATTTGCTTCCAAAACAAACTATTGTCTGTTTTCTCACCTTTATTTCTAAACAGAAACTGCATAAGTTCCTA 1717 44.5 MVAGRSENCKMTEACMLPPVKKPRKERNRGKLSGSAATTEVMEEIWKDFPEDLFEAVIARLPIATFFRFRAVCQKWNSLLNSESFSFYCAQVPQTTPWFYTITHDMVSSGAIYDPSLKKWHHPSISSQPIKSLVLPVASAGGLVCLLDFSHRNFYVCNPLTQSLKELPARSVEVWSRVAVGMTLNGSSTSGGYNILCLGCDGEYEIYDSVKNSWIHPGRMPSSIKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVSYNMVTGVWKQFIVPAPLHLTDHTLAEYGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLEFYGKHVRMNCLGNKGLLMLSLRSRQTNRLVTYDVTSKEWSKVPGVPRGRKRQWITSGTAFYPCPTAVA 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 77517300 77521466 - XM_039051215.1 Bhi12g02463 54275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g02463 393 SUPERFAMILY F-box domain 46 126 IPR036047 GO:0005515
Bhi12g02463 393 SUPERFAMILY Galactose oxidase, central domain 110 378 IPR011043 -
Bhi12g02463 393 SMART fbox_2 49 89 IPR001810 GO:0005515
Bhi12g02463 393 Gene3D - 100 382 IPR015915 GO:0005515
Bhi12g02463 393 Pfam F-box domain 46 85 IPR001810 GO:0005515
Bhi12g02463 393 PANTHER BNAA07G08860D PROTEIN 16 393 - -
Bhi12g02463 393 PANTHER F-BOX/KELCH-REPEAT PROTEIN 16 393 - -
Bhi12g02463 393 ProSiteProfiles F-box domain profile. 43 90 IPR001810 GO:0005515
Bhi12g02463 393 Gene3D - 46 85 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g02463 - - - csv:101211089 790.801
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00447 Bhi-Chr1:7650236 Bhi12g02463 Bhi-Chr12:77517300 7.47E-25 dispersed
Bhi01g00448 Bhi-Chr1:7650236 Bhi12g02463 Bhi-Chr12:77517300 7.47E-25 dispersed
Bhi01g03567 Bhi-Chr1:90688843 Bhi12g02463 Bhi-Chr12:77517300 5.08E-18 dispersed
Bhi06g00319 Bhi-Chr6:7214687 Bhi12g02463 Bhi-Chr12:77517300 5.66E-33 dispersed
Bhi06g00320 Bhi-Chr6:7214687 Bhi12g02463 Bhi-Chr12:77517300 5.66E-33 dispersed
Bhi09g03053 Bhi-Chr9:79070726 Bhi12g02463 Bhi-Chr12:77517300 1.82E-29 dispersed
Bhi09g03054 Bhi-Chr9:79070727 Bhi12g02463 Bhi-Chr12:77517300 1.82E-29 dispersed
Bhi12g02463 Bhi-Chr12:77517300 Bhi12g02465 Bhi-Chr12:77517353 0 dispersed
Bhi12g02463 Bhi-Chr12:77517300 Bhi12g02464 Bhi-Chr12:77517300 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1260 Blo01g00179 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo12g00276 . . . . . . . . . . . . . Cpe17g01076 . Bhi12g02463 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005573 1 3 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 40