Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g02501 CACTGTTCTAGCGGCGCTCTGACCCTCGGAATTGCTGTTTCTTTCCCTCCAAATTTAATGGGTTTGTTGATCTTGGTGTAGGAAAGGGGGAAGAGGGGTTTCTGGGAATCTATCGAAAATCGTGGGTTGTAGTTCACAGGGAGAAGATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTGCAGTGTCTCTCCACCAAGCTTCCTAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACCGGTAGTCTTTCAGCAAACCACCAGAGATTCCTAGCCACTGGAATCAGAGTGGCCGTGAGCTCAAGCTGCACGAAGGATGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCCAACTTCACATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGAAAGAACAACTAGAGTTTGGGGAATTAGAATGGTTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACATTCAAGTAGTGCACTTGCATGCAGACCGACGAAGTCGACCATGTCATACAAAAAGCCTAGGATCGAGATGGTTGATGATGAGGAGTTTTTTACGGTTCCTGATCTTGGATGAACAGAAGAGAGGCACTGATGTTGAGTTGGTATGCCTTAATGAATGATACAGTTTATAACCTTACAAAATGTGTATGTATGTAGTATTTATCGTCAAAATCTATGGTTTGATAGTATGCATTATAGTAGTCTTCTATTATCTTGTGGCTAGAATATTCGTTCAGTCCGGTTATTTTTGTTTTGTATCTTATTAACCTTATTGTAACTTTTGGATCTTTTATGAAAAATGTAAGATTATTTTAAAGAATGGCAACACGTGTTCGAGATTCTTGCCCTCCGATA 1138 42.53 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAVSSSCTKDVDKVKMEPPNPKNPQVPAKVPSQQVPNFTSPWAVDDFLHFSDLESSDKKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSSSALACRPTKSTMSYKKPRIEMVDDEEFFTVPDLG 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 78596226 78598889 - XM_039019551.1 Bhi12g02501 54313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g02501 236 SMART bboxneu5 52 99 IPR000315 GO:0008270
Bhi12g02501 236 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bhi12g02501 236 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bhi12g02501 236 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 236 - -
Bhi12g02501 236 Gene3D Classic Zinc Finger 1 121 - -
Bhi12g02501 236 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bhi12g02501 236 CDD Bbox1_BBX-like 5 47 - -
Bhi12g02501 236 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 236 - -
Bhi12g02501 236 CDD Bbox1_BBX-like 56 98 - -
Bhi12g02501 236 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Bhi12g02501 236 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g02501 - - - csv:101215327 448.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g03200 Bhi-Chr1:80175021 Bhi12g02501 Bhi-Chr12:78596226 7.31E-44 dispersed
Bhi10g01956 Bhi-Chr10:48774845 Bhi12g02501 Bhi-Chr12:78596226 2.58E-34 dispersed
Bhi12g02501 Bhi-Chr12:78596226 Bhi12g02502 Bhi-Chr12:78596226 4.83E-174 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g00682 . 1 377 Orphan Transcription Factor Family AT5G61850 69.9 6.3e-124 441.8
Bhi12g02502 . 1 167 Orphan Transcription Factor Family AT1G06040 68.4 9.3e-61 230.7
Bhi12g02501 . 1 161 Orphan Transcription Factor Family AT1G06040 70.2 2.1e-60 229.6
Bhi01g03200 . 1 126 Orphan Transcription Factor Family AT1G06040 61.9 1.7e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2758 PF00643 zf-B_box 5.30E-08 No_clan Bhi TF