Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g02501 CACTGTTCTAGCGGCGCTCTGACCCTCGGAATTGCTGTTTCTTTCCCTCCAAATTTAATGGGTTTGTTGATCTTGGTGTAGGAAAGGGGGAAGAGGGGTTTCTGGGAATCTATCGAAAATCGTGGGTTGTAGTTCACAGGGAGAAGATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTGCAGTGTCTCTCCACCAAGCTTCCTAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACCGGTAGTCTTTCAGCAAACCACCAGAGATTCCTAGCCACTGGAATCAGAGTGGCCGTGAGCTCAAGCTGCACGAAGGATGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCCAACTTCACATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGAAAGAACAACTAGAGTTTGGGGAATTAGAATGGTTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACATTCAAGTAGTGCACTTGCATGCAGACCGACGAAGTCGACCATGTCATACAAAAAGCCTAGGATCGAGATGGTTGATGATGAGGAGTTTTTTACGGTTCCTGATCTTGGATGAACAGAAGAGAGGCACTGATGTTGAGTTGGTATGCCTTAATGAATGATACAGTTTATAACCTTACAAAATGTGTATGTATGTAGTATTTATCGTCAAAATCTATGGTTTGATAGTATGCATTATAGTAGTCTTCTATTATCTTGTGGCTAGAATATTCGTTCAGTCCGGTTATTTTTGTTTTGTATCTTATTAACCTTATTGTAACTTTTGGATCTTTTATGAAAAATGTAAGATTATTTTAAAGAATGGCAACACGTGTTCGAGATTCTTGCCCTCCGATA 1138 42.53 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAVSSSCTKDVDKVKMEPPNPKNPQVPAKVPSQQVPNFTSPWAVDDFLHFSDLESSDKKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSSSALACRPTKSTMSYKKPRIEMVDDEEFFTVPDLG 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 78596226 78598889 - XM_039019551.1 Bhi12g02501 54313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g02501 236 SMART bboxneu5 52 99 IPR000315 GO:0008270
Bhi12g02501 236 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bhi12g02501 236 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bhi12g02501 236 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 236 - -
Bhi12g02501 236 Gene3D Classic Zinc Finger 1 121 - -
Bhi12g02501 236 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bhi12g02501 236 CDD Bbox1_BBX-like 5 47 - -
Bhi12g02501 236 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 236 - -
Bhi12g02501 236 CDD Bbox1_BBX-like 56 98 - -
Bhi12g02501 236 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Bhi12g02501 236 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g03200 Bhi-Chr1:80175021 Bhi12g02501 Bhi-Chr12:78596226 7.31E-44 dispersed
Bhi10g01956 Bhi-Chr10:48774845 Bhi12g02501 Bhi-Chr12:78596226 2.58E-34 dispersed
Bhi12g02501 Bhi-Chr12:78596226 Bhi12g02502 Bhi-Chr12:78596226 4.83E-174 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2758 PF00643 zf-B_box 5.30E-08 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g02501 - - csv:101215327 448.743