Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g02504 ATTTCATTCCAAATTCTTATTTCCCTCTGCAAAACCTAATCCTATCTTCAAAAAAAAAAAAAAAAAAAAAGTTCTTTCTTTACGAATTCCTTTTTCTTGAACCTCAAATCCTCTCTCTCGCTCGTCGCCACATTCCCTTTGCCCTAATTCATTTGCTCTGCACAATCGGTGATAAAAGCCCAAAGGTGAATTCAGTATCTGTTTCTTCGTTTCTATTCCAATGCCGCTTCCTCCCAAACTGAGCCGACAACTGCACAGGGAATCAGACGTTGCGGATATGCCTTCCAACAGCTTGTGGGTTGGTAACTTATCCATAGATGTCACCGATGCGGATCTCATGAATTTGTTTGCGCAGTTTGGTGCGCTTGATAGTGTCACTTCCTATTCCTCCAGGAGCTACGCTTTCATCTTCTTCAAGCACATGGAGGATGCTCAAGCGGCCAAGGAGGCTCTTCAGGGTTTTTTTCTGCGTGGGAGTCCTATCAAAATCGAGTTTGCCAGACCGGCCAAACCTTGTAGGAATTTGTGGGTGGGTGGAATTAGCCCAGCTGTTTCAAGGGAACAACTTGAAGAAGAATTTTCCAAATTTGGTAAAATTGATGAATTTAAGTTTTTGCGAGATCGGAATACTGCATTTGTTGAGTATGTTCGATTGGAAGATGCATCACAGGCTTTGAGAATGATGAATGGGAAACGCATTGGTGGAGACCAGATTCGAGTTGATTTTCTTCGGTCACAGCCAATGAGAAGATGGCCAGACACCAGAGATGGGCATGGACAGCTTCAGGGTAGAAATGTGGGGATGGGTGATTTCCAATCTGGTTATAAAAGACCACTGCATGCTCAATCTTCAGAAGTGCGTAGAGATGGACCTCCCAGTAAGGTTTTGTGGATTGGTTACCCTCCATCTGTTCAAATTGATGAACAAATGCTCCACAATGCAATGATTTTATTTGGTGAGATAGAGAGAATTACGAGTTTCCATTCTAGGCATTTTGCATTTGTAGAATTTAGAAGTGTTGATGAAGCACGACGTGCTAAGGAGGGTCTACAAGGACGGCTTTTTAATGATCCTCGGATTACTATTATGTTTTCAAACAGTGATCCGGGACCCGTAAAAGAGCACCCTGGCTTTTATCCTGGTGGTAAAGAGGCTAGGCCTGATATGTTCTTCAATGAGCATCAAATCCGTCCTCCACCAATGGACCTGATGGGACATCCTCACCCAATGGTGCAAAATAAGTTTCCTGGACCACTGCCATCTAGTGGTATTCTTGGACCAAACACAGCAGTAAGACCACCACCCTTTGGTCCTCCACAGGGTATCTCAGGGCCCCCTGAGTTTAATGACTTGGCCACACCGCATAGTTTCCAGGATGCAAATTCAAAAAATATGATGGGTCCAAATTGGAGAAGGCAATCTCCTCCTGCACCTGGGATACTTTCTTCTCCAGCTACTGGTATTCGTCCACCTCCACCAGTGAGGTCCACTCCAAATTCATGGGATGTTTTGGATGTAAATCAATTCCAGAGGGATACCAAACGATTAAGGATAGATGGTCCAGCATCCTTAGACGATGCTTCTTTTCCTCCAAGAAAGATGGATAACCGGGGCATGGGTTTTGATCAGCAATATGGGGTTGGTCCAGTAAGTGATGGAGGTTCTTCTGTTGCATATGCCAATGCTCCAGCGAAGACTCCTGCTATTCCTATAGGTGCAAGGGCACCAGTGAATGGTCCTGGCCAGAGCCATGCTGAAAATGATTTTATATGGCGTGGAATAATTGCCAAGGGAGGAACACCTGTTTGTCATGCACGTTGTGTCCCAATTGGCGAAGGAATAGGAAGTGAGCTTCCTGAAGTAGTCAATTGTTCAGCAAGAACTGGGCTGGATCAACTCACTAAACATTATGCTGAAGCCACTGGATTCGACATTGTATTTTTCTTGCCAGATAGTGAGGATGATTTTGCATCCTATACCGAATTCCTGCGTTACCTAGGTGCAAAAAACCGTGCAGGTGTTGCTAAGTTTGATGATGGAACGACAATGTTTTTGGTTCCTCCTTCTGAGTTTTTGAGAAAAGTCTTGAAAGTTTCTGGTCCTGAACGGCTTTATGGTCTCGTTCTCAAATTTCCTCAGGTGTCTATTAGTGAACCTGCTCCCCAACAGTCATATCTACCCATTCTCACATCTGACTATGGTGAGAGACAGCATGTTTTGCCTTCACAAACTGAATATGGGACGGTGCCTCCAAAGCAGGATCAACTTCCTCCAATGGATTATAAAAGGGTTTTGCATGACGAAACCAAGGAGCCCCCCAAACCACTTCTGCCCACAAGTGAGCCACTACCGCTAGCAGTTCAGCCCTTGCCTCAAGAGTATTCTGGTAACAATAATACAGCTGCAATCTCGCAAGCTGGGTTAGCATTAACACCCGAGCTTATTGCCACCTTGGTTTCTTTACTGCCTGGTAAGACACAGTCATCCAGTATAGAGAGTGCCAAACAACCAGCAGTCTCACCACAACCTCCAATTCCTCCTGTTGTTTCTAATAAAGGGGCTACATCTGAGGGATGGATGGTAGGTCATCAATCTTCTGATCTAACCGGTCAGCCATTTCAGCCAATGGGAAATCATTTTAATCCTCAGGGACAGAGCCTTTCTCAATTTCAGCCTTATCCACCTCTCCCCCAGACACCAAACCAGCTTGCACCACAGGTCATTGGAACAAGCCAAATCCAAGATGCCGCTGTCAGTCTGCCACAGCAGCAGCAGGTACCCATTCCTTACAGGCCTTTGTCTACTTATTCTGCTCCTCCTGAAAATGCACAAGCTTCTGGTTTGGCCTTGGCCAATACTCAGTATCAGCATGACGTCTCACAAGTTAACCAGAGAGGTTATGGGTCAGTCAATGGAGTTGATACTTATGGGTATGGTGCACCAGTTATGCAACAATCAACAAATACTGTGACCTTATCTAATCAAGGTCAGGGTTCTACTACACAGTCACAACCTATTACTCAATTAGCATCAGATAGAGTGAACCCTGAGCTTCCTTATCAGATGCAGCATTTGCAACCTGCCAACCTTGGCACTGGCACTGGGACCAGTGAGGTTGAGGCAGGCAAGGACCAGAGATATCGATCTACACTCCAATTTGCCGCCAATTTACTCCTCCAGATCCAGCAGCAGCAGCAGCAGCAGCAACAGCAAACAGGCTGGGGTTCAGGAAATCAATAGTGAGCAGCCCTTCGTTTAGGTAAATTGCGAGGGTGAAAGGGAGAAGAGTTTAATTATGGGGTTTGTTTCAGAAGTCAGTGGATGGATGCATGCGCTCGCTCGTTCACGCACGCCTTCGTTTTCTCCTTTCAAACTAATGTATGTAGTCTGTGGATGGATGCATGTGCTCGCTCGTTCACGCATGCCTTCGTTTTCTCCTTTCAAACTAATGTATGTTCGTGTCGCACCATGGCCTCCTCATTTGCCCACACGCCAATACCCCTCGCAATTGTATCTCATTTTTGGAATTTCAGTCTTCTGCAATCTATGTAGCATAGCTTGTTTTTAGAAACATTAATATTTCTTTCAAGTTTCATAATTAATTTTGGTTATTGCA 3617 45.04 MPLPPKLSRQLHRESDVADMPSNSLWVGNLSIDVTDADLMNLFAQFGALDSVTSYSSRSYAFIFFKHMEDAQAAKEALQGFFLRGSPIKIEFARPAKPCRNLWVGGISPAVSREQLEEEFSKFGKIDEFKFLRDRNTAFVEYVRLEDASQALRMMNGKRIGGDQIRVDFLRSQPMRRWPDTRDGHGQLQGRNVGMGDFQSGYKRPLHAQSSEVRRDGPPSKVLWIGYPPSVQIDEQMLHNAMILFGEIERITSFHSRHFAFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSNSDPGPVKEHPGFYPGGKEARPDMFFNEHQIRPPPMDLMGHPHPMVQNKFPGPLPSSGILGPNTAVRPPPFGPPQGISGPPEFNDLATPHSFQDANSKNMMGPNWRRQSPPAPGILSSPATGIRPPPPVRSTPNSWDVLDVNQFQRDTKRLRIDGPASLDDASFPPRKMDNRGMGFDQQYGVGPVSDGGSSVAYANAPAKTPAIPIGARAPVNGPGQSHAENDFIWRGIIAKGGTPVCHARCVPIGEGIGSELPEVVNCSARTGLDQLTKHYAEATGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFDDGTTMFLVPPSEFLRKVLKVSGPERLYGLVLKFPQVSISEPAPQQSYLPILTSDYGERQHVLPSQTEYGTVPPKQDQLPPMDYKRVLHDETKEPPKPLLPTSEPLPLAVQPLPQEYSGNNNTAAISQAGLALTPELIATLVSLLPGKTQSSSIESAKQPAVSPQPPIPPVVSNKGATSEGWMVGHQSSDLTGQPFQPMGNHFNPQGQSLSQFQPYPPLPQTPNQLAPQVIGTSQIQDAAVSLPQQQQVPIPYRPLSTYSAPPENAQASGLALANTQYQHDVSQVNQRGYGSVNGVDTYGYGAPVMQQSTNTVTLSNQGQGSTTQSQPITQLASDRVNPELPYQMQHLQPANLGTGTGTSEVEAGKDQRYRSTLQFAANLLLQIQQQQQQQQQQTGWGSGNQ 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 78614070 78628491 - XM_039019889.1 Bhi12g02504 54316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g02504 1006 Pfam SPOC domain 510 629 IPR012921 -
Bhi12g02504 1006 SUPERFAMILY RNA-binding domain, RBD 98 294 IPR035979 GO:0003676
Bhi12g02504 1006 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 9 1005 - -
Bhi12g02504 1006 CDD RRM3_Spen 102 171 - -
Bhi12g02504 1006 PANTHER RNA RECOGNITION MOTIF-CONTAINING 9 1005 - -
Bhi12g02504 1006 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 172 IPR000504 GO:0003723
Bhi12g02504 1006 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 294 IPR000504 GO:0003723
Bhi12g02504 1006 SMART rrm1_1 24 91 IPR000504 GO:0003723
Bhi12g02504 1006 SMART rrm1_1 101 168 IPR000504 GO:0003723
Bhi12g02504 1006 SMART rrm1_1 222 290 IPR000504 GO:0003723
Bhi12g02504 1006 CDD RRM3_Spen 25 94 - -
Bhi12g02504 1006 Gene3D - 97 207 IPR012677 -
Bhi12g02504 1006 CDD RRM3_Spen 223 293 - -
Bhi12g02504 1006 Gene3D - 208 298 IPR012677 -
Bhi12g02504 1006 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 287 IPR000504 GO:0003723
Bhi12g02504 1006 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 166 IPR000504 GO:0003723
Bhi12g02504 1006 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 89 IPR000504 GO:0003723
Bhi12g02504 1006 SUPERFAMILY RNA-binding domain, RBD 13 97 IPR035979 GO:0003676
Bhi12g02504 1006 Gene3D - 7 96 IPR012677 -
Bhi12g02504 1006 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 95 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g02504 - - - csv:101214330 1849.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g01259 Bhi-Chr10:29486571 Bhi12g02504 Bhi-Chr12:78614070 3.94E-07 dispersed
Bhi12g02504 Bhi-Chr12:78614070 Bhi12g02506 Bhi-Chr12:78614070 0 dispersed
Bhi12g02504 Bhi-Chr12:78614070 Bhi12g02505 Bhi-Chr12:78614070 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41