Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00007 ATGAGCTCCAGGAGTCTTCTTAACCATGGTCGTGGCGGTGGAGGTGCCAGATTGTTAATAGACGATAACAGAAGCAGCCATCTCCAATTCAACAACATGCCCGTTTCTGCCACTGTTGACCCTCGAGTTTTTTCTCATTCTCTGGCTAAATCCTCTATTTTCAGCTCTCCTGGACTCTCTCTCGCGCTTCATACTAATTTGGAGGCGCCACCCAGAATGGCTGAAGCTTTCGAGCATAACCTTGGGAGAAGAAGTAGAGAGGAATTAGAGCACGAAAGCAGATCCGGCAGTGATAACATGGATGGCGCCTCCGGCGACGAACAAGATGCCACCGGCGACAAGCCACCGAGAAAGAAACGATACCACCGACACACTCCTCAGCAAATCCAAGAACTCGAACTAGTTTTCAAGGAGTGCCCTCATCCCGATGAGAAGCAAAGATTAGAGCTTAGCCGGAGGCTATGTTTGGAAACCAGACAAGTTAAGTTCTGGTTCCAAAATCGTCGAACCCAGATGAAGACTCAGTTGGAAAGGCACGAGAATACGCTGCTGAGGCAAGAAAACGACAAGCTCAGATCGGAGAACTTGGCGATTAGGGAGGCGATGAGGAACCCAATTTGCACCAATTGCGGTGGTCCTGTGATGAATACTGAAATATCACTTGAAGAACAGCAACTGAGGATCGAAAATGCCCGATTGAAAGACGAGTTAGACCGTGTTTTCCTCCTGGCCGGAAAATTTCTTGGTCGACCTGTTGCTACTCCACTTTCAGGCTCAAATTTAGAGCTTGGGGTTAGAATGAACGGCTTTGGTGGCCTCCCTATGACTGCATCCATGCCTCTACCCCCGGACTTTGCCATCGGAGTTGTCAACAATCCGCATAGTTCTGTGGATAGGTCCATGTTTCTAGAGCTAGCCTTGGGCGCCATGGATGAACTGGTGAAAATAGCGCAGACAGACGATCCTCTTTGGACCAGAAATTCAGAAATGGGAAGAGAAATCCTGAACCAGGAGAAGTATATGAAAATATTTTCTCCCTGCACTGGTTTAAAATCAAATGGTTTTGCAAGGGAGGCTTCTAGAGAGACCGGCCTCGTTATCATTAACACCATCGCTCTCGTCGAAACGCTGATGGATTCGAATAGTTGGGCGGAGATGTTTCCTTGTTTGATTGCTAGAACGAGCACGACCGATGTGATATCGAGCGGAGTGGGAGGAACAAGAAATGGAGCATTGCAACTGATGCACGCTGAATTTCAAGTACTGTCTCCGTTGGTTCCGAGTCGATCGGTTAGTTTCCTTCGCTTCAGCAAACAGCACGCCGAAGGGGTCTGGGTCGTTGTCGATGTCTCCATTGACACCATGAAAGAAGTTAATTCCAGGAGGCTTCCTTCTGGCTGTGTCATCCAAGAAATGCCAAATGGGTGCTCCAAGGTCACGTGGGTGGAGCATGCTGAGTACGACGAAAGCCAAGTCCACCAGCTCTACCGCCCCCTACTAAGCTCCGGCATCGGCTTCGGAGCTCGACGATGGGTCGCCACCCTACAACGCCAATGCCAATGTCTCGCTATCCTCATGTCTTCCCCCCTTCCGCCTCCCAACCAAACTGGTATAACTCCGACGGGTCACCGGAGCATGTTGAAGTTGGCCGGGAGGATGACCGAAAACTTCTGTGCTGGAGTGTGCGCATCGACGGTGCATGAATGGAGCAAGCTTAACGCCGGAAACATGGATGAGAACGTCCGGGTGATGACCCGACAGAGCGTCAATGATCCCGGGGAGCCTCCTGGAATTGTGCTGAGCGCCGCCACGTCTGTTTGGCTTCCGGTTTCCCCGGAGCGGTTGTTCGACTTTCTTCGCGATGAACGACTGAGGAGTGAGTGGGACGTTCTATCCAACGGCGGACCCATGCAGGAGATGACCCACATTTCCAAAGGTCAAGACCGTCGCAACTGCATTTCTCTCCTACGAGCTAGCGCTATGAATGCCGATCGGAGCAGTATGCTAATACTCCAAGAGACATGTATAGACGCTGCGGGATCATTAGTTGTGTACGCCCCAGTTGACATTGCTGCCATGCAAATTATGATGAACAGCGGAGATTCAACCTACGTGGCACTATTACCATCTGGATTCGCCATAGTACCTGACGGACGAGGGTTGATTGGCCCCGCCGAAGCAATCAATGACAATAAATTTGGAGAAGGTAAGGATGGCCGTGGCCCACGACCACGTAGCGGTGGTGGGTCTCTCCTCACTGTAGCCTTTCAAATCCTGGTGAACAACCTCCCAACGGCCAAGCTCACGGTGGAGTCGGTGGAGACGGTCAACAATCTCATTTCCTGCACCGTGCAAAAGATCAAGGTTGCTCTTCAATGCAACAACTAA 2388 50.88 MSSRSLLNHGRGGGGARLLIDDNRSSHLQFNNMPVSATVDPRVFSHSLAKSSIFSSPGLSLALHTNLEAPPRMAEAFEHNLGRRSREELEHESRSGSDNMDGASGDEQDATGDKPPRKKRYHRHTPQQIQELELVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRSENLAIREAMRNPICTNCGGPVMNTEISLEEQQLRIENARLKDELDRVFLLAGKFLGRPVATPLSGSNLELGVRMNGFGGLPMTASMPLPPDFAIGVVNNPHSSVDRSMFLELALGAMDELVKIAQTDDPLWTRNSEMGREILNQEKYMKIFSPCTGLKSNGFAREASRETGLVIINTIALVETLMDSNSWAEMFPCLIARTSTTDVISSGVGGTRNGALQLMHAEFQVLSPLVPSRSVSFLRFSKQHAEGVWVVVDVSIDTMKEVNSRRLPSGCVIQEMPNGCSKVTWVEHAEYDESQVHQLYRPLLSSGIGFGARRWVATLQRQCQCLAILMSSPLPPPNQTGITPTGHRSMLKLAGRMTENFCAGVCASTVHEWSKLNAGNMDENVRVMTRQSVNDPGEPPGIVLSAATSVWLPVSPERLFDFLRDERLRSEWDVLSNGGPMQEMTHISKGQDRRNCISLLRASAMNADRSSMLILQETCIDAAGSLVVYAPVDIAAMQIMMNSGDSTYVALLPSGFAIVPDGRGLIGPAEAINDNKFGEGKDGRGPRPRSGGGSLLTVAFQILVNNLPTAKLTVESVETVNNLISCTVQKIKVALQCNN 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 139402 144780 + BLOR00007 Blo01g00007 54447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00007 795 CDD START_ArGLABRA2_like 299 520 - -
Blo01g00007 795 Gene3D - 104 191 - -
Blo01g00007 795 SMART HOX_1 116 179 IPR001356 GO:0003677
Blo01g00007 795 Coils Coil 214 236 - -
Blo01g00007 795 SMART START_1 304 521 IPR002913 GO:0008289
Blo01g00007 795 Pfam Homeodomain 118 173 IPR001356 GO:0003677
Blo01g00007 795 SUPERFAMILY Homeodomain-like 103 175 IPR009057 -
Blo01g00007 795 MobiDBLite consensus disorder prediction 81 125 - -
Blo01g00007 795 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 57 793 - -
Blo01g00007 795 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 57 793 IPR042160 -
Blo01g00007 795 Pfam START domain 305 521 IPR002913 GO:0008289
Blo01g00007 795 CDD homeodomain 117 175 IPR001356 GO:0003677
Blo01g00007 795 SUPERFAMILY Bet v1-like 298 521 - -
Blo01g00007 795 ProSitePatterns 'Homeobox' domain signature. 150 173 IPR017970 GO:0000981|GO:0006355
Blo01g00007 795 Coils Coil 169 204 - -
Blo01g00007 795 MobiDBLite consensus disorder prediction 81 97 - -
Blo01g00007 795 ProSiteProfiles START domain profile. 295 524 IPR002913 GO:0008289
Blo01g00007 795 ProSiteProfiles 'Homeobox' domain profile. 115 175 IPR001356 GO:0003677
Blo01g00007 795 SUPERFAMILY Bet v1-like 553 786 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00007 Blo-Chr1:139402 Blo16g00629 Blo-Chr16:25131110 0 dispersed
Blo10g00543 Blo-Chr10:14604274 Blo01g00007 Blo-Chr1:139402 0 dispersed
Blo01g00007 Blo-Chr1:139402 Blo02g00373 Blo-Chr2:4133203 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11794 PF01852 START 1.60E-49 CL0209 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00007 K09338 - qsu:111991611 1138.25