Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00023 ATGAAATGGCACCGAACTGGCAGAAGACACAGACGGCCTGATTCTAAAGATATATCGACTTTTTACATGTCTTCTGATTATGAAGATGAAGTGAATGAGAAAGAAGAAGATGTAGCACTCAATTCAATCAATCATAGACTGACGGATGGTGATAAAAGTTTGAGTAAAGATATGCGAAATACTTTCAGAGGAATGTCCTCTAGTGGTGGTTCAGAGACAGTGCTGAAAAGGTCCAGATTGGATTCTGTTTTCTTGAGAACTGCAAAAAGACAGACAGATCATTTATACAAACACATAGTAAGAAAAAATGTGACAAATAAAAAATCTCAGACAGAAGTTCTGTCTGCAATTTGCAAATTCTTTTACCATGCAGGAGTTCCTTTGCAGGCAGCAAACTCTGTGTACTTTCAAAAGATGCTGGACTTAGTTGGTCAGTATGGACCAGGTTTAGCGGGTCCTTCCAGTCGACAAATATCTGGTCCATATCTACAGGATGAAATTTCAATAATAAAGAATCACCTAACCGAGTATCAAGATGCTTCAAACTTGTGTAAACTACTGGACAAAGTGGTGGAAGAGATAGGCGAGGAAAATGTGGTGCAGGTGATTACAGAGAATACTCCCATTTTTAAAGTTGTTGGGAAGATGCTCGAGGAGAAGAGGCGACATTTATTCTGGACACCATGTGCTGTCTATTGTATTGATTGCATGCTCGAAGATTTTTTGAAGATAAGATTAGTGGAAGAGTGCATGGAGAAGGGTCAAAAAATAACAAAGTTTATTTACAATCATAACTGGTTGTTAAATGTCATGAAGAATGATTTTACCCAGGGGCAAGAACTTCTGAGACCAGCTGTTACTAGATGCGCCTCAAGCTTTGCTACTTTGCAGAGCTTGCTGGACCATAGAAATAATCTTAAAAGAATGTTCGTATCAAATAAATGGGTTTCGTGTTCCTATTCTAAATTTGATGAGGGGAAAGAAGTGGAAAAGATTGTCTTGAATACTACATTTTGGAAGAAAGTTCAGTGTGTTAGGAAATCAGTAGATCCCATACTGGAGATTCTTCAAAAGGTGGACAGTGGCAAAGGCTTGTTGATATCATCTATATATAATGATATGTGCAGAGCAAAGGTTGCAATCAAATCTATTCATGGAGATGACACACGCAAATATGGTTCTTTCTGGAATGTTATAGACAATCACTGGGATTCATTATTCTGTCATCCTTTATACGTGGCTGCTTACTTCTTAAATCCATCACTCAGATATCGTCCCGACTTTATGGCGCATTCTGAGGTGGTACGAGGACTCAATGAATGTATAGTTCGGCTGGAGCCAGACAATACCAAAAGGATTTCTGCTTCTATGCAGATTTCTGATTATAATTTGGCAAAAGCTGATTTTGGAACAGAGTTGGCTGTAAGTACAAGAACAGATCTTGATCCAGCTGCTTGGTGGCAACAGCATGGAATAAGTTGCTTAGAGCTGCAGAGAATAGCTGTCCGGGTGTTGAGTCAGACATGCACATCTTGCAGCTATGAACAGAAATGGAGTATATTTGACCAAATTCGCACGCGAAGACATAATCTTTTAGCTCAGAGAAAATTTAATGACCTAACTTACGTTCATTATAACCTGAGACTTAGAGAACAGCAACTGAGAAAGAATTCCAATTATTCAATCTCTCTCGACAGTTCTCTTCTAGAGTGTTTGCTAGATGACTGGATTATTGCAACAGAAAAGCAAGCAATGCAGGAAGATGAGGAAATTCTCGAAGAAATGGAGCATGTCGATCTGTTGGAGAATGATTTAGTTGATTACGAAGATGAAAGTGGAGAGGGAGAGGGAAGGAGGGGATGCTTAGAGTTTGGAACTTTGGCCCGTGCAGAGACATTGGATGGTGGTAATGCAATAAATGCCGGTGCCGGCACGGATAGTTCGCCGGAGCTCAAGTTCTATGATGATGATATGAGTGACTGA 1983 39.69 MKWHRTGRRHRRPDSKDISTFYMSSDYEDEVNEKEEDVALNSINHRLTDGDKSLSKDMRNTFRGMSSSGGSETVLKRSRLDSVFLRTAKRQTDHLYKHIVRKNVTNKKSQTEVLSAICKFFYHAGVPLQAANSVYFQKMLDLVGQYGPGLAGPSSRQISGPYLQDEISIIKNHLTEYQDASNLCKLLDKVVEEIGEENVVQVITENTPIFKVVGKMLEEKRRHLFWTPCAVYCIDCMLEDFLKIRLVEECMEKGQKITKFIYNHNWLLNVMKNDFTQGQELLRPAVTRCASSFATLQSLLDHRNNLKRMFVSNKWVSCSYSKFDEGKEVEKIVLNTTFWKKVQCVRKSVDPILEILQKVDSGKGLLISSIYNDMCRAKVAIKSIHGDDTRKYGSFWNVIDNHWDSLFCHPLYVAAYFLNPSLRYRPDFMAHSEVVRGLNECIVRLEPDNTKRISASMQISDYNLAKADFGTELAVSTRTDLDPAAWWQQHGISCLELQRIAVRVLSQTCTSCSYEQKWSIFDQIRTRRHNLLAQRKFNDLTYVHYNLRLREQQLRKNSNYSISLDSSLLECLLDDWIIATEKQAMQEDEEILEEMEHVDLLENDLVDYEDESGEGEGRRGCLEFGTLARAETLDGGNAINAGAGTDSSPELKFYDDDMSD 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 336142 339468 + BLOR00023 Blo01g00023 54463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00023 660 MobiDBLite consensus disorder prediction 636 660 - -
Blo01g00023 660 Pfam Protein of unknown function (DUF 659) 176 257 IPR007021 -
Blo01g00023 660 PANTHER OSJNBA0013A04.12 PROTEIN 1 179 - -
Blo01g00023 660 PANTHER OSJNBA0013A04.12 PROTEIN 183 597 - -
Blo01g00023 660 SUPERFAMILY Ribonuclease H-like 175 549 IPR012337 -
Blo01g00023 660 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 1 179 - -
Blo01g00023 660 Coils Coil 578 611 - -
Blo01g00023 660 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 183 597 - -
Blo01g00023 660 Pfam hAT family C-terminal dimerisation region 477 547 IPR008906 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00023 - - - vvi:100247647 867.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00023 Blo-Chr1:336142 Blo03g00398 Blo-Chr3:10455220 7.85E-77 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g258 Blo01g00023 . . . . . . Bma05g00985 . . . Cma14g01559 . Car14g01374 . . Cpe03g01303 Bhi01g01128 . . . Hepe05g1345 . Lcy11g1304 . . . . . . . . . . . Lsi05g01387 . . Cme06g00830 . . . . Bpe05g00794 . . . . . Cmo14g01593 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007263 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 4 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00023 Blo_Chr01 FPKM 44.516045 51.821751 35.350304 39.35268 20.124151 20.32935 19.114208 44.02293 47.336582 41.914585