Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00030 ATGGCGTCGGGAACCAAAGCAACGTCTTCAATTCAACAAGCGCAGTCCTCGAATACGAATACGAATACGAGTATTTCGAGAGTTCAACAAGCTGAATCCATTCGGAAAGCCGTTTCGCAGTTCACCGTCGACGCTCGTCTCCATGCAGTCTTCGAGCAGTCAGGCGAGTCGGGTAAGTCTTTCGACTATTCTCAATCTGTGAAAACGACCACACAATCTGTCCCAGAGCAACAAATTACTGCCTACTTGTCCAGAATTCAGAGGGGTGGGCATATTCAGCCCTTTGGGTGTATGATAGCCATCGATGAGGCCACTTTTCAAGTCATTGCCTACAGTGAAAATTCCCGAGAAATGCTTGGTCTTACTTTTCAATCAGTCCCTAGTCTTGAAAAACCTGAAATTCTTGCAATCGGCACTGATGTTCGTGCATTATTCACACCCTCGAGCTCAATTCTACTGGAGAAGGCATTTGGGGCTCGAGAAATCACATTGTTAAACCCTATTTGGATTCACTCCAAGAATTCAGGCAAGCCCTTTTATGCAATTTTGCATCGGATTGATGTAGGTGTTGTTATTGATCTGGAGCCTGCTAGGACTGAGGACCCCGCTTTGTCCATTGCCGGGGCAGTTCAGTCACAGAAGCTAGCTGTGCGTGCAATTTCTCGGTTGCAGTCACTTCCTGGTGGAGATATTAAGCTTTTGTGTGATACTGTTGTTGAAAGTGTGAAGGAACTAACTGGTTATGACAGAGTTATGGTGTATAAATTTCATGACGATGAGCATGGCGAGGTTGTGGCAGAGAGTAAGAGACCAGATTTGGAGCCATATATTGGATTACACTATCCCGCCACTGATATACCTCAGGCATCACGGTTTCTCTTCAAGCAGAATCGGGTCAGAATGATTGTAGATTGCCATGCTTCACCTGTTGGTGTGGTCCAGGATGATGGGCTTAAGCAGCCTCTGTGCTTGGTTGGTTCAACACTTCGTGGATCTCACAAATGTCATTCCCAATATATGGCCAATATGGGTTCCATTGCCTCGTTAGCCATGGCAGTTATTATCAATGGCAATGAGGAGGAAGCGGTTGGAAGGAACTCAATGAGGTTATGGGGCCTTGTCGTTTGCCATCACACTTCTGCACGTTGTATTCCATTCCCACTTCGTTATGCTTGCGAGTTCCTAATGCAGGCTTTTGGGCTCCAATTGAATATGGAATTGCAATTGGCTTCACAGCTTTCTGAAAAACATGTTTTGAGGACTCAAACCCTCTTATGCGACATGCTTCTCCGTGATTCACCCTCTGGAATTGTTACTCAAAGCCCAAGTATTATGGACCTTGTGAAATGTGATGGCGCAGCACTCTACTACCAGGGAAAATATTATCCATTGGGTGTGACCCCCTCTGAATCCCAGCTTAGGGACATTGTGGAGTGGTTGTTGGCTTTCCATGCAGATTCGACGGGATTAAGCACTGATAGCTTGGCTGATGCTGGCTACCCTGGAGCAGCATCACTGGGTAATGAGGTTTGTGGAATGGCAGTTGCTTATATCACTGAAAGAGATTTTTTGTTCTGGTTTCGATCCCATACTGCAAAAGAGGTCAAGTGGGGTGGCGCAAAGCATCATCCGGATGACAAAGATGATGGTCAGAGAATGCATCCTCGTTCATCTTTCAAGGCATTCTTAGAAGTGGTGAAAAATCGCAGTTTGCCTTGGGAGAACCCTGAAATGGATGCAATTCATTCTTTGCAGCTTATTTTTAGAGACTCATTTCGACTTGCAGAGGATAATTCTAAGGCGGTGATACATTCTGAAATTGAGGATTATGAGATTCAAGGTATGGATGAGCTCAGCTCAGTTGCCAGAGAAATGGTTAGATTGATAGAGACGGCAACTGCTCCAATATTTGCTGTGGATGTGGAGGGTCGTATAAATGGATGGAATGGGAAGATTGCAGAGTCAACTGGACTACCAGTTGAGGAAGCCATGGGGAAATCCTTGGTTTATGATCTTGTTTATAAGGAATCTGAACAAACTGTCGGCAAGCTTCTCTATCGTGCTTTAAGAGGGGAAGAAGATAAAAATGTAGAGATAAAATTAAAGACGTTTGGGTTAGGAGATGATAAAAAGCCAGTGTTTTTAGTGGTTAATGCTTGCTCTAGCAAGGATTACAAAAACAATATTGTTGGAGTTTGTTTTGTTGGCCAGGATGTTACTGTCCAAAAAGTTGTAATGGACAAGTTCATCCATATACAAGGGGATTACAAGGCCATTGTACACAGTCCTAGTCCACTAATCCCTCCCATATTTGCATCAGACGATAATACATGTTGCTCAGAATGGAATACAGCTATGGAAAAACTAACGGGATGGTCTAGAGGAGACGTTATCGGAAAAATGTTGGTTGGGGAGGTTTTTGGCAATTGTTGTAGGCTTAAGGGTCCAGATGCGGTGACAAAATTTATGATTGTCTTGCACAATGCTATTGGAGGTGAGGACACAAATAAGTTTTCATTTTCTTTTTTCGACCGCAATAGGAAATATGTGCAAGCTCTACTAACAGCGAACAAGAGGGTGAATATGGATGGTCAGGTCATTGGGGCCTTCTGTTTCTTGCAGATTGCTAGTCCTGAGTTGCAACAAACTCTTAAAGTTCAGAGCCAACAGGAGAAAAAGCGGTCTGTGAGGATGAAAGAGTTGGCTTACATTGGCCAGGAAATAAAAAATCCTCTAAGTGGAATAAGGTTTACTAACTCGCTTTTGGAGGGCACAACATTAACCGAAGATCAGAAGCAATTTCTTGAAACTAGTGCTGCTTGTGAGAGGCAGATTTTGAAGATAATTGAAGATATTGATTTGGAAACAATTGAAGATGGAGTGTCTTCTCTACACAACCTAAGTATCGGACTTCGTATTACTTTAGATAATGGTTTAAATCGGTGTTTAAGTTCTTTGGAGCTTGAGAAGGCTGAGTTCTTTTTGGGGAGTGTCATCAATGCTGTTGTTAGCCAAATAATGATATTGCTGAGAGAGAAAAATTTACAGTTGATTCGAGATATTCCAGAAGAAGTCAAAACTTTATCAATCTATGGAGATCAAGTGAGAATTCAACAGGTCTTGGTCGATTTCTTGTTGAACATGGTGCGATATGCTCCATCTCCAGAAGGATGGGTTGGGATTCACGTACGTCCAAGCATAAACAAAGTTTCTGAAAGTATCACTCTTGTGCGTATTGAATTCAGGATGGTATGCCCCGGCGAAGGTCTTCCTCCTGATTTAGTTCACGACATGTTCAATAGCAGTCACTGGATGACCAAAGAAGGCCTTGGGCTGAGCATGTGTCGAAAGATTCTGAAGCTCATGGACGGTGAAGTCCAGTACGTCAGAGAGTCAGAAAGATGCTATTTCTTAACTATTATCGATCTTCCAACCAGTCAACAACATCAACTAGGACATTAA 3462 43.18 MASGTKATSSIQQAQSSNTNTNTSISRVQQAESIRKAVSQFTVDARLHAVFEQSGESGKSFDYSQSVKTTTQSVPEQQITAYLSRIQRGGHIQPFGCMIAIDEATFQVIAYSENSREMLGLTFQSVPSLEKPEILAIGTDVRALFTPSSSILLEKAFGAREITLLNPIWIHSKNSGKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISRLQSLPGGDIKLLCDTVVESVKELTGYDRVMVYKFHDDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVGVVQDDGLKQPLCLVGSTLRGSHKCHSQYMANMGSIASLAMAVIINGNEEEAVGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPSGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPSESQLRDIVEWLLAFHADSTGLSTDSLADAGYPGAASLGNEVCGMAVAYITERDFLFWFRSHTAKEVKWGGAKHHPDDKDDGQRMHPRSSFKAFLEVVKNRSLPWENPEMDAIHSLQLIFRDSFRLAEDNSKAVIHSEIEDYEIQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNGKIAESTGLPVEEAMGKSLVYDLVYKESEQTVGKLLYRALRGEEDKNVEIKLKTFGLGDDKKPVFLVVNACSSKDYKNNIVGVCFVGQDVTVQKVVMDKFIHIQGDYKAIVHSPSPLIPPIFASDDNTCCSEWNTAMEKLTGWSRGDVIGKMLVGEVFGNCCRLKGPDAVTKFMIVLHNAIGGEDTNKFSFSFFDRNRKYVQALLTANKRVNMDGQVIGAFCFLQIASPELQQTLKVQSQQEKKRSVRMKELAYIGQEIKNPLSGIRFTNSLLEGTTLTEDQKQFLETSAACERQILKIIEDIDLETIEDGVSSLHNLSIGLRITLDNGLNRCLSSLELEKAEFFLGSVINAVVSQIMILLREKNLQLIRDIPEEVKTLSIYGDQVRIQQVLVDFLLNMVRYAPSPEGWVGIHVRPSINKVSESITLVRIEFRMVCPGEGLPPDLVHDMFNSSHWMTKEGLGLSMCRKILKLMDGEVQYVRESERCYFLTIIDLPTSQQHQLGH 1153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 401409 405778 + BLOR00030 Blo01g00030 54470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00030 1153 CDD HisKA 897 952 IPR003661 GO:0000155|GO:0007165
Blo01g00030 1153 PANTHER PHYTOCHROME 12 1147 - -
Blo01g00030 1153 PANTHER TWO-COMPONENT HISTIDINE KINASE 12 1147 - -
Blo01g00030 1153 SMART pas_2 754 824 IPR000014 -
Blo01g00030 1153 SMART pas_2 623 690 IPR000014 -
Blo01g00030 1153 Pfam His Kinase A (phospho-acceptor) domain 901 960 IPR003661 GO:0000155|GO:0007165
Blo01g00030 1153 SUPERFAMILY GAF domain-like 415 591 - -
Blo01g00030 1153 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 886 952 IPR036097 GO:0000155|GO:0007165
Blo01g00030 1153 TIGRFAM sensory_box: PAS domain S-box protein 628 741 IPR000014 -
Blo01g00030 1153 Gene3D PAS domain 619 743 - -
Blo01g00030 1153 SMART HisKA_10 896 960 IPR003661 GO:0000155|GO:0007165
Blo01g00030 1153 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1032 1135 IPR003594 -
Blo01g00030 1153 Gene3D - 878 958 - -
Blo01g00030 1153 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 995 1144 IPR036890 -
Blo01g00030 1153 SMART gaf_1 230 417 IPR003018 GO:0005515
Blo01g00030 1153 Pfam PAS fold 755 874 IPR013767 GO:0006355
Blo01g00030 1153 Pfam PAS fold 624 739 IPR013767 GO:0006355
Blo01g00030 1153 ProSiteProfiles Histidine kinase domain profile. 903 1147 IPR005467 -
Blo01g00030 1153 PIRSF Phytochrome_conventional 14 1151 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Blo01g00030 1153 Gene3D - 412 585 IPR043150 -
Blo01g00030 1153 MobiDBLite consensus disorder prediction 1 27 - -
Blo01g00030 1153 Gene3D PAS domain 85 333 - -
Blo01g00030 1153 CDD PAS 766 874 IPR000014 -
Blo01g00030 1153 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 230 397 IPR016132 -
Blo01g00030 1153 Gene3D PAS domain 768 877 - -
Blo01g00030 1153 Gene3D - 984 1149 IPR036890 -
Blo01g00030 1153 Gene3D - 211 568 IPR029016 -
Blo01g00030 1153 Pfam PAS fold 81 197 IPR013654 GO:0006355
Blo01g00030 1153 ProSiteProfiles PAS repeat profile. 755 807 IPR000014 -
Blo01g00030 1153 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 717 734 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 330 351 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 624 640 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 145 167 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 643 658 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 737 757 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 245 264 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 Pfam GAF domain 230 407 IPR003018 GO:0005515
Blo01g00030 1153 ProSiteProfiles PAS repeat profile. 621 692 IPR000014 -
Blo01g00030 1153 SUPERFAMILY PYP-like sensor domain (PAS domain) 86 198 IPR035965 -
Blo01g00030 1153 Pfam Phytochrome region 420 592 IPR013515 GO:0006355|GO:0009584
Blo01g00030 1153 CDD PAS 632 739 IPR000014 -
Blo01g00030 1153 SUPERFAMILY PYP-like sensor domain (PAS domain) 626 735 IPR035965 -
Blo01g00030 1153 SUPERFAMILY GAF domain-like 210 404 - -
Blo01g00030 1153 CDD HATPase_Phy-like 1031 1143 IPR044767 -
Blo01g00030 1153 SMART HKATPase_4 1032 1147 IPR003594 -
Blo01g00030 1153 SUPERFAMILY PYP-like sensor domain (PAS domain) 769 872 IPR035965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00030 K12121 PHYB; phytochrome B - zju:107418995 1904.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00030 Blo07g00144 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00030 Blo-Chr1:401409 Blo07g00144 Blo-Chr7:1906954 0 dispersed
Blo01g00030 Blo-Chr1:401409 Blo02g00140 Blo-Chr2:1219131 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g63 Blo01g00030 . . Bda08g00333 . . . Bma05g00993 . . Cma06g01564 Cma14g01590 Car06g01329 Car14g01399 Sed02g1136 Cpe08g00149 Cpe03g01327 Bhi01g01090 Tan10g1077 Cmetu06g1585 . Hepe05g1374 . Lcy11g1336 . . . . . . . Cone14ag0717 Cone15ag0729 . . Lsi05g01420 . . Cme06g00790 . Blo07g00144 Bda11g00500 . Bpe05g00798 Bpe13g00697 . Bma06g01466 . Cmo06g01560 Cmo14g01619 . . . . . . . . . . . . . Cla05g00707 Cam05g0774 Cec05g0782 Cco05g0775 Clacu05g0764 Cmu05g0730 Cre05g0804 . Csa03g01519 Chy06g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00878 BCT 9 1158 Histidine Kinase Gene Family AT2G17820 63.3 0.0e+00 1365.5
Blo16g00087 BCT 35 1178 Histidine Kinase Gene Family AT2G17820 63.7 0.0e+00 1358.2
Blo11g00965 . 17 1036 Histidine Kinase Gene Family AT2G01830 69.6 0.0e+00 1333.2
Blo01g00163 . 159 1111 Histidine Kinase Gene Family AT2G01830 52.4 7.3e-271 930.6
Blo12g00277 . 8 927 Histidine Kinase Gene Family AT2G01830 53.8 3.7e-267 918.3
Blo02g00136 . 308 1182 Histidine Kinase Gene Family AT2G01830 50.4 1.5e-236 816.6
Blo01g01429 . 1 940 Histidine Kinase Gene Family AT5G10720 59.1 1.0e-292 1003.0
Blo18g00692 . 112 1231 Histidine Kinase Gene Family AT1G09570 75.9 0.0e+00 1735.7
Blo07g00144 CCT 699 1790 Histidine Kinase Gene Family AT1G09570 53.7 0.0e+00 1175.6
Blo01g00030 CCT 36 1148 Histidine Kinase Gene Family AT1G09570 52.6 0.0e+00 1164.8
Blo02g00140 BCT 494 1519 Histidine Kinase Gene Family AT1G09570 53.7 0.0e+00 1130.5
Blo01g00879 . 36 1109 Histidine Kinase Gene Family AT1G09570 50.3 2.9e-310 1061.6
Blo15g00443 . 12 682 Histidine Kinase Gene Family AT1G09570 61.9 3.7e-249 858.6
Blo01g00030 CCT 12 1084 Histidine Kinase Gene Family AT2G18790 75.4 0.0e+00 1607.0
Blo07g00144 CCT 700 1741 Histidine Kinase Gene Family AT2G18790 75.7 0.0e+00 1601.3
Blo01g00879 . 15 1047 Histidine Kinase Gene Family AT2G18790 62.1 0.0e+00 1286.6
Blo02g00140 BCT 494 1510 Histidine Kinase Gene Family AT2G18790 53.2 0.0e+00 1083.2
Blo18g00692 . 132 1166 Histidine Kinase Gene Family AT2G18790 50.8 9.7e-306 1046.6
Blo15g00443 . 23 683 Histidine Kinase Gene Family AT2G18790 61.5 6.9e-235 811.2
Blo02g00140 BCT 499 1520 Histidine Kinase Gene Family AT5G35840 62.6 0.0e+00 1308.1
Blo07g00144 CCT 691 1792 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1133.2
Blo18g00692 . 120 1226 Histidine Kinase Gene Family AT5G35840 50.2 0.0e+00 1105.5
Blo01g00030 CCT 39 1144 Histidine Kinase Gene Family AT5G35840 50.9 0.0e+00 1102.4
Blo15g00443 . 10 682 Histidine Kinase Gene Family AT5G35840 68.7 1.1e-274 943.3
Blo15g00444 BCT 1 367 Histidine Kinase Gene Family AT5G35840 52.7 3.2e-107 387.1
Blo07g00144 CCT 673 1792 Histidine Kinase Gene Family AT4G16250 72.9 0.0e+00 1638.2
Blo01g00030 CCT 8 1144 Histidine Kinase Gene Family AT4G16250 72.0 0.0e+00 1637.5
Blo01g00879 . 35 1109 Histidine Kinase Gene Family AT4G16250 60.1 0.0e+00 1307.7
Blo02g00140 BCT 482 1520 Histidine Kinase Gene Family AT4G16250 52.4 1.1e-312 1069.7
Blo15g00443 . 24 683 Histidine Kinase Gene Family AT4G16250 59.4 2.4e-227 786.2
Blo01g00879 . 14 1110 Histidine Kinase Gene Family AT4G18130 64.4 0.0e+00 1400.6
Blo07g00144 CCT 708 1786 Histidine Kinase Gene Family AT4G18130 58.5 0.0e+00 1249.2
Blo01g00030 CCT 39 1145 Histidine Kinase Gene Family AT4G18130 57.1 0.0e+00 1237.6
Blo15g00443 . 28 683 Histidine Kinase Gene Family AT4G18130 55.3 7.8e-207 718.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00030 Blo_Chr01 FPKM 4.305555 4.750327 8.124833 6.551472 5.715166 7.904751 7.38422 5.139578 4.13412 7.170137