Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00030 ATGGCGTCGGGAACCAAAGCAACGTCTTCAATTCAACAAGCGCAGTCCTCGAATACGAATACGAATACGAGTATTTCGAGAGTTCAACAAGCTGAATCCATTCGGAAAGCCGTTTCGCAGTTCACCGTCGACGCTCGTCTCCATGCAGTCTTCGAGCAGTCAGGCGAGTCGGGTAAGTCTTTCGACTATTCTCAATCTGTGAAAACGACCACACAATCTGTCCCAGAGCAACAAATTACTGCCTACTTGTCCAGAATTCAGAGGGGTGGGCATATTCAGCCCTTTGGGTGTATGATAGCCATCGATGAGGCCACTTTTCAAGTCATTGCCTACAGTGAAAATTCCCGAGAAATGCTTGGTCTTACTTTTCAATCAGTCCCTAGTCTTGAAAAACCTGAAATTCTTGCAATCGGCACTGATGTTCGTGCATTATTCACACCCTCGAGCTCAATTCTACTGGAGAAGGCATTTGGGGCTCGAGAAATCACATTGTTAAACCCTATTTGGATTCACTCCAAGAATTCAGGCAAGCCCTTTTATGCAATTTTGCATCGGATTGATGTAGGTGTTGTTATTGATCTGGAGCCTGCTAGGACTGAGGACCCCGCTTTGTCCATTGCCGGGGCAGTTCAGTCACAGAAGCTAGCTGTGCGTGCAATTTCTCGGTTGCAGTCACTTCCTGGTGGAGATATTAAGCTTTTGTGTGATACTGTTGTTGAAAGTGTGAAGGAACTAACTGGTTATGACAGAGTTATGGTGTATAAATTTCATGACGATGAGCATGGCGAGGTTGTGGCAGAGAGTAAGAGACCAGATTTGGAGCCATATATTGGATTACACTATCCCGCCACTGATATACCTCAGGCATCACGGTTTCTCTTCAAGCAGAATCGGGTCAGAATGATTGTAGATTGCCATGCTTCACCTGTTGGTGTGGTCCAGGATGATGGGCTTAAGCAGCCTCTGTGCTTGGTTGGTTCAACACTTCGTGGATCTCACAAATGTCATTCCCAATATATGGCCAATATGGGTTCCATTGCCTCGTTAGCCATGGCAGTTATTATCAATGGCAATGAGGAGGAAGCGGTTGGAAGGAACTCAATGAGGTTATGGGGCCTTGTCGTTTGCCATCACACTTCTGCACGTTGTATTCCATTCCCACTTCGTTATGCTTGCGAGTTCCTAATGCAGGCTTTTGGGCTCCAATTGAATATGGAATTGCAATTGGCTTCACAGCTTTCTGAAAAACATGTTTTGAGGACTCAAACCCTCTTATGCGACATGCTTCTCCGTGATTCACCCTCTGGAATTGTTACTCAAAGCCCAAGTATTATGGACCTTGTGAAATGTGATGGCGCAGCACTCTACTACCAGGGAAAATATTATCCATTGGGTGTGACCCCCTCTGAATCCCAGCTTAGGGACATTGTGGAGTGGTTGTTGGCTTTCCATGCAGATTCGACGGGATTAAGCACTGATAGCTTGGCTGATGCTGGCTACCCTGGAGCAGCATCACTGGGTAATGAGGTTTGTGGAATGGCAGTTGCTTATATCACTGAAAGAGATTTTTTGTTCTGGTTTCGATCCCATACTGCAAAAGAGGTCAAGTGGGGTGGCGCAAAGCATCATCCGGATGACAAAGATGATGGTCAGAGAATGCATCCTCGTTCATCTTTCAAGGCATTCTTAGAAGTGGTGAAAAATCGCAGTTTGCCTTGGGAGAACCCTGAAATGGATGCAATTCATTCTTTGCAGCTTATTTTTAGAGACTCATTTCGACTTGCAGAGGATAATTCTAAGGCGGTGATACATTCTGAAATTGAGGATTATGAGATTCAAGGTATGGATGAGCTCAGCTCAGTTGCCAGAGAAATGGTTAGATTGATAGAGACGGCAACTGCTCCAATATTTGCTGTGGATGTGGAGGGTCGTATAAATGGATGGAATGGGAAGATTGCAGAGTCAACTGGACTACCAGTTGAGGAAGCCATGGGGAAATCCTTGGTTTATGATCTTGTTTATAAGGAATCTGAACAAACTGTCGGCAAGCTTCTCTATCGTGCTTTAAGAGGGGAAGAAGATAAAAATGTAGAGATAAAATTAAAGACGTTTGGGTTAGGAGATGATAAAAAGCCAGTGTTTTTAGTGGTTAATGCTTGCTCTAGCAAGGATTACAAAAACAATATTGTTGGAGTTTGTTTTGTTGGCCAGGATGTTACTGTCCAAAAAGTTGTAATGGACAAGTTCATCCATATACAAGGGGATTACAAGGCCATTGTACACAGTCCTAGTCCACTAATCCCTCCCATATTTGCATCAGACGATAATACATGTTGCTCAGAATGGAATACAGCTATGGAAAAACTAACGGGATGGTCTAGAGGAGACGTTATCGGAAAAATGTTGGTTGGGGAGGTTTTTGGCAATTGTTGTAGGCTTAAGGGTCCAGATGCGGTGACAAAATTTATGATTGTCTTGCACAATGCTATTGGAGGTGAGGACACAAATAAGTTTTCATTTTCTTTTTTCGACCGCAATAGGAAATATGTGCAAGCTCTACTAACAGCGAACAAGAGGGTGAATATGGATGGTCAGGTCATTGGGGCCTTCTGTTTCTTGCAGATTGCTAGTCCTGAGTTGCAACAAACTCTTAAAGTTCAGAGCCAACAGGAGAAAAAGCGGTCTGTGAGGATGAAAGAGTTGGCTTACATTGGCCAGGAAATAAAAAATCCTCTAAGTGGAATAAGGTTTACTAACTCGCTTTTGGAGGGCACAACATTAACCGAAGATCAGAAGCAATTTCTTGAAACTAGTGCTGCTTGTGAGAGGCAGATTTTGAAGATAATTGAAGATATTGATTTGGAAACAATTGAAGATGGAGTGTCTTCTCTACACAACCTAAGTATCGGACTTCGTATTACTTTAGATAATGGTTTAAATCGGTGTTTAAGTTCTTTGGAGCTTGAGAAGGCTGAGTTCTTTTTGGGGAGTGTCATCAATGCTGTTGTTAGCCAAATAATGATATTGCTGAGAGAGAAAAATTTACAGTTGATTCGAGATATTCCAGAAGAAGTCAAAACTTTATCAATCTATGGAGATCAAGTGAGAATTCAACAGGTCTTGGTCGATTTCTTGTTGAACATGGTGCGATATGCTCCATCTCCAGAAGGATGGGTTGGGATTCACGTACGTCCAAGCATAAACAAAGTTTCTGAAAGTATCACTCTTGTGCGTATTGAATTCAGGATGGTATGCCCCGGCGAAGGTCTTCCTCCTGATTTAGTTCACGACATGTTCAATAGCAGTCACTGGATGACCAAAGAAGGCCTTGGGCTGAGCATGTGTCGAAAGATTCTGAAGCTCATGGACGGTGAAGTCCAGTACGTCAGAGAGTCAGAAAGATGCTATTTCTTAACTATTATCGATCTTCCAACCAGTCAACAACATCAACTAGGACATTAA 3462 43.18 MASGTKATSSIQQAQSSNTNTNTSISRVQQAESIRKAVSQFTVDARLHAVFEQSGESGKSFDYSQSVKTTTQSVPEQQITAYLSRIQRGGHIQPFGCMIAIDEATFQVIAYSENSREMLGLTFQSVPSLEKPEILAIGTDVRALFTPSSSILLEKAFGAREITLLNPIWIHSKNSGKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISRLQSLPGGDIKLLCDTVVESVKELTGYDRVMVYKFHDDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVGVVQDDGLKQPLCLVGSTLRGSHKCHSQYMANMGSIASLAMAVIINGNEEEAVGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPSGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPSESQLRDIVEWLLAFHADSTGLSTDSLADAGYPGAASLGNEVCGMAVAYITERDFLFWFRSHTAKEVKWGGAKHHPDDKDDGQRMHPRSSFKAFLEVVKNRSLPWENPEMDAIHSLQLIFRDSFRLAEDNSKAVIHSEIEDYEIQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNGKIAESTGLPVEEAMGKSLVYDLVYKESEQTVGKLLYRALRGEEDKNVEIKLKTFGLGDDKKPVFLVVNACSSKDYKNNIVGVCFVGQDVTVQKVVMDKFIHIQGDYKAIVHSPSPLIPPIFASDDNTCCSEWNTAMEKLTGWSRGDVIGKMLVGEVFGNCCRLKGPDAVTKFMIVLHNAIGGEDTNKFSFSFFDRNRKYVQALLTANKRVNMDGQVIGAFCFLQIASPELQQTLKVQSQQEKKRSVRMKELAYIGQEIKNPLSGIRFTNSLLEGTTLTEDQKQFLETSAACERQILKIIEDIDLETIEDGVSSLHNLSIGLRITLDNGLNRCLSSLELEKAEFFLGSVINAVVSQIMILLREKNLQLIRDIPEEVKTLSIYGDQVRIQQVLVDFLLNMVRYAPSPEGWVGIHVRPSINKVSESITLVRIEFRMVCPGEGLPPDLVHDMFNSSHWMTKEGLGLSMCRKILKLMDGEVQYVRESERCYFLTIIDLPTSQQHQLGH 1153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 401409 405778 + BLOR00030 Blo01g00030 54470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00030 1153 CDD HisKA 897 952 IPR003661 GO:0000155|GO:0007165
Blo01g00030 1153 PANTHER PHYTOCHROME 12 1147 - -
Blo01g00030 1153 PANTHER TWO-COMPONENT HISTIDINE KINASE 12 1147 - -
Blo01g00030 1153 SMART pas_2 754 824 IPR000014 -
Blo01g00030 1153 SMART pas_2 623 690 IPR000014 -
Blo01g00030 1153 Pfam His Kinase A (phospho-acceptor) domain 901 960 IPR003661 GO:0000155|GO:0007165
Blo01g00030 1153 SUPERFAMILY GAF domain-like 415 591 - -
Blo01g00030 1153 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 886 952 IPR036097 GO:0000155|GO:0007165
Blo01g00030 1153 TIGRFAM sensory_box: PAS domain S-box protein 628 741 IPR000014 -
Blo01g00030 1153 Gene3D PAS domain 619 743 - -
Blo01g00030 1153 SMART HisKA_10 896 960 IPR003661 GO:0000155|GO:0007165
Blo01g00030 1153 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1032 1135 IPR003594 -
Blo01g00030 1153 Gene3D - 878 958 - -
Blo01g00030 1153 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 995 1144 IPR036890 -
Blo01g00030 1153 SMART gaf_1 230 417 IPR003018 GO:0005515
Blo01g00030 1153 Pfam PAS fold 755 874 IPR013767 GO:0006355
Blo01g00030 1153 Pfam PAS fold 624 739 IPR013767 GO:0006355
Blo01g00030 1153 ProSiteProfiles Histidine kinase domain profile. 903 1147 IPR005467 -
Blo01g00030 1153 PIRSF Phytochrome_conventional 14 1151 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Blo01g00030 1153 Gene3D - 412 585 IPR043150 -
Blo01g00030 1153 MobiDBLite consensus disorder prediction 1 27 - -
Blo01g00030 1153 Gene3D PAS domain 85 333 - -
Blo01g00030 1153 CDD PAS 766 874 IPR000014 -
Blo01g00030 1153 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 230 397 IPR016132 -
Blo01g00030 1153 Gene3D PAS domain 768 877 - -
Blo01g00030 1153 Gene3D - 984 1149 IPR036890 -
Blo01g00030 1153 Gene3D - 211 568 IPR029016 -
Blo01g00030 1153 Pfam PAS fold 81 197 IPR013654 GO:0006355
Blo01g00030 1153 ProSiteProfiles PAS repeat profile. 755 807 IPR000014 -
Blo01g00030 1153 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 717 734 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 330 351 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 624 640 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 145 167 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 643 658 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 737 757 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 PRINTS Phytochrome signature 245 264 IPR001294 GO:0006355|GO:0009584
Blo01g00030 1153 Pfam GAF domain 230 407 IPR003018 GO:0005515
Blo01g00030 1153 ProSiteProfiles PAS repeat profile. 621 692 IPR000014 -
Blo01g00030 1153 SUPERFAMILY PYP-like sensor domain (PAS domain) 86 198 IPR035965 -
Blo01g00030 1153 Pfam Phytochrome region 420 592 IPR013515 GO:0006355|GO:0009584
Blo01g00030 1153 CDD PAS 632 739 IPR000014 -
Blo01g00030 1153 SUPERFAMILY PYP-like sensor domain (PAS domain) 626 735 IPR035965 -
Blo01g00030 1153 SUPERFAMILY GAF domain-like 210 404 - -
Blo01g00030 1153 CDD HATPase_Phy-like 1031 1143 IPR044767 -
Blo01g00030 1153 SMART HKATPase_4 1032 1147 IPR003594 -
Blo01g00030 1153 SUPERFAMILY PYP-like sensor domain (PAS domain) 769 872 IPR035965 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g00030 Blo07g00144 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00030 Blo-Chr1:401409 Blo07g00144 Blo-Chr7:1906954 0 dispersed
Blo01g00030 Blo-Chr1:401409 Blo02g00140 Blo-Chr2:1219131 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00030 K12121 - zju:107418995 1904.41