Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00037 ATGAATTACCATGAGAACCGCCGTAGCCCACGCGACTTCAGAGTTGGAGGCAACGGCGGCCACCACCGTTTTTTCGACGGTCCGCCTGGTCAATCTCCTGGAGGTGGCGGTGAGTTTTGGCCAATGGGTGGGGAAGGTGATGGATTTCGGCCGATTGGTGATGGTAGAGGATTTGGGTTTAATCACCAAGCTCCGCATATGGTGGGACAAAAACGAGGGTATCCTTTCCTGGGACGTGGAGAATCTCCTGATCATCTTAACAATAGTAATTTTGCAAAGCTTTTTGTTGGATCTGTTCCGCGGACAGCCACAGAAGAAGATATTCGTCCGCTGTTTGAAAGACATGGGAATGTGATGGAGGTAGCATTGATTAAAGATAAGAGAACGGGGCAGCAACAAGGCTGTTGTTTTATAAAATATGCAACCTCAGAGGAAGCCGATAGAGCAATCCGAGCTTTGAACAATCAACAAACGCTTCCTGGAGGAGTGGGCCCCATTCAAGTAAGATATGCAGATGGTGAAAGGGAGAGACTAGGTGCTGTTGAGTTCAAATTGTTTGTTGGGTCCCTGAACAAACACGCTACAGAAAAGGAAGTTGAGGAAATCTTTTCTCCATATGGCCGTGTAGAAGATGTTTATCTTATGCGTGATGAGTTCAAGCAGAGTCGAGGATGTGGATTTGTTAAGTATTCAAATAGAGATGTGGCATTGGCGGCTATAAAGGCCCTTCATGGAATTTATATGATGGGGGGTTGTGATCAGCCTTTAACTGTCCGGTTTGCTGATCCTAAGAGGCCTAGATCTGGAGATTCAAGAAGTACTTTCGCAATTGGAGGATCTGGTTTTGGTCCTCACTCACAAAGGGCATTGGCTGACGATGGTACTCGTGGCTTTGGAAGTCCAGTACCTCCAAGGTCGAATGACATGGCACTTCCTTTGATACCGGGTGGTCCTGGAGGTTCCCGTGCAAGTTCCGCAAATTCATCTTCTTCAACATCAAAGGAGTTATTAAATCTTCTGTTAATTTTTTTAATTAAAATACAGTCTCCAGTACAAGCTCCTCCAGTTGGACAAGTGTCCTCGTTGCATAAGCCTGTTCAGTCATCACCTCACTTCCCACCATCCGTTCAATTATACCCTCAAACTTCAGCTTCCTACTCCCAAGCACAGGCATCTTTAGCATCAATACGGCCACGATATCCTCTTGCTTCTGGTCAGATAATGTACAACCAAGCTTCAACATCCCAACAGTCTATTGGAGCAGTAAGTGGGCAGTTGGGTTCTCAGAATTCAGTCCCTCAGCAGATCTCACTTGTCCCTGGGTTACAGACACCTTTGAGTACCAACTTGCAACCTCATGCTGGATCCACTCTAACCAATCAAAATCATCATCCTGCACCTGTTGAGCAATCTCCATCTGAATTGGCTCAGATGCTATCACAACAAACACAAACTTTGCAGGCTAGCTTTCAGTCTTCACAACAGGCATTCTCACAGCTGCAGCAGCAGCTGCACCTAATGCAACCTTCAAATCAAGCTTTATCTCAGCAGCAAATTTCCTACGCTTCTAAAATGCAGGTTACTGGAAATGTGCGGCATACAGTTGGCAGTAGCACTCCTGCTGCTGCAGATGTATCTTCATCCACACCTGGTGCGTTTGCTGTTTCTTCAACTGCTCAGCCTCTAGCTCCTGCAAAATGTGATTGGACAGAACACATCTCCCCTGATGGTTACAAATACTATTATAATAGCGTGACTGGTGAAAGTAGGTGGGAGAAACCTGAGCAGTTTGCTCTACTTGAGCAACAACAACAAAAGCAATCAGTTCAGCAGTCTCAAACTCAGTCCTTTCCTCCAGCCTCCTCTCTATCAATCCCTCAAAATCAACAGATACAGTTTCAAGGAGAAACACTTGGTGCCGGGGGCCCTCTTAGCGATCAGGCACGAAAATGTATCGACCCAGATGCAGGCATTTTAGTTGTAAGACTGGGATTAGGCTTTTGCTGGTTCGGAGCCTCTTTCTAA 2025 46.12 MNYHENRRSPRDFRVGGNGGHHRFFDGPPGQSPGGGGEFWPMGGEGDGFRPIGDGRGFGFNHQAPHMVGQKRGYPFLGRGESPDHLNNSNFAKLFVGSVPRTATEEDIRPLFERHGNVMEVALIKDKRTGQQQGCCFIKYATSEEADRAIRALNNQQTLPGGVGPIQVRYADGERERLGAVEFKLFVGSLNKHATEKEVEEIFSPYGRVEDVYLMRDEFKQSRGCGFVKYSNRDVALAAIKALHGIYMMGGCDQPLTVRFADPKRPRSGDSRSTFAIGGSGFGPHSQRALADDGTRGFGSPVPPRSNDMALPLIPGGPGGSRASSANSSSSTSKELLNLLLIFLIKIQSPVQAPPVGQVSSLHKPVQSSPHFPPSVQLYPQTSASYSQAQASLASIRPRYPLASGQIMYNQASTSQQSIGAVSGQLGSQNSVPQQISLVPGLQTPLSTNLQPHAGSTLTNQNHHPAPVEQSPSELAQMLSQQTQTLQASFQSSQQAFSQLQQQLHLMQPSNQALSQQQISYASKMQVTGNVRHTVGSSTPAAADVSSSTPGAFAVSSTAQPLAPAKCDWTEHISPDGYKYYYNSVTGESRWEKPEQFALLEQQQQKQSVQQSQTQSFPPASSLSIPQNQQIQFQGETLGAGGPLSDQARKCIDPDAGILVVRLGLGFCWFGASF 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 473856 487186 - BLOR00037 Blo01g00037 54477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00037 674 ProSiteProfiles WW/rsp5/WWP domain profile. 563 596 IPR001202 GO:0005515
Blo01g00037 674 MobiDBLite consensus disorder prediction 602 625 - -
Blo01g00037 674 MobiDBLite consensus disorder prediction 443 482 - -
Blo01g00037 674 Gene3D - 81 180 IPR012677 -
Blo01g00037 674 SUPERFAMILY WW domain 568 600 IPR036020 GO:0005515
Blo01g00037 674 Gene3D - 563 614 - -
Blo01g00037 674 MobiDBLite consensus disorder prediction 260 329 - -
Blo01g00037 674 MobiDBLite consensus disorder prediction 1 38 - -
Blo01g00037 674 ProSitePatterns WW/rsp5/WWP domain signature. 569 594 IPR001202 GO:0005515
Blo01g00037 674 PRINTS Paraneoplastic encephalomyelitis antigen family signature 244 261 IPR002343 GO:0003723|GO:1990904
Blo01g00037 674 PRINTS Paraneoplastic encephalomyelitis antigen family signature 188 203 IPR002343 GO:0003723|GO:1990904
Blo01g00037 674 PRINTS Paraneoplastic encephalomyelitis antigen family signature 203 215 IPR002343 GO:0003723|GO:1990904
Blo01g00037 674 PRINTS Paraneoplastic encephalomyelitis antigen family signature 92 107 IPR002343 GO:0003723|GO:1990904
Blo01g00037 674 SMART ww_5 564 596 IPR001202 GO:0005515
Blo01g00037 674 Gene3D - 181 269 IPR012677 -
Blo01g00037 674 MobiDBLite consensus disorder prediction 1 19 - -
Blo01g00037 674 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 173 IPR000504 GO:0003723
Blo01g00037 674 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 44 632 - -
Blo01g00037 674 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 158 IPR000504 GO:0003723
Blo01g00037 674 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 250 IPR000504 GO:0003723
Blo01g00037 674 PANTHER RNA BINDING PROTEIN 44 632 - -
Blo01g00037 674 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 263 IPR000504 GO:0003723
Blo01g00037 674 SMART rrm1_1 93 169 IPR000504 GO:0003723
Blo01g00037 674 SMART rrm1_1 184 259 IPR000504 GO:0003723
Blo01g00037 674 SUPERFAMILY RNA-binding domain, RBD 183 287 IPR035979 GO:0003676
Blo01g00037 674 Pfam WW domain 568 594 IPR001202 GO:0005515
Blo01g00037 674 SUPERFAMILY RNA-binding domain, RBD 65 177 IPR035979 GO:0003676
Blo01g00037 674 CDD WW 566 595 IPR001202 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00037 - - - zju:107407400 615.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00037 Blo12g00030 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00037 Blo-Chr1:473856 Blo12g00030 Blo-Chr12:1992215 0 dispersed
Blo01g00037 Blo-Chr1:473856 Blo05g00333 Blo-Chr5:3867423 2.47E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00037 Blo_Chr01 FPKM 1.763494 1.146507 25.847294 25.334652 8.763138 11.584871 10.619715 19.624142 19.754313 17.974178