Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00042 ATGGTGGCAGTTTCTCCAAATCCAGTTTATGGTGAAGTGGTAAGCCGAGACGTCGTTGAGCTTCCGGTAATCGACCTTTCTGCAGAGAGATCAGAGGTGGCGAAGCTGATGGTGAAGGCCTGCGAGGACTACGGATTTTTCAAGGTCATTAACCATGGAGTTTCTAAAGACTTGATTGCCCATCTCGAGGAAGAAAGCTTCAAGTTTTTTGCAAAACCACAATCGGAAAAAAAAGCAGCCGGGCCAGCAAATCCCTTTGGCTATGGCTGCAAAACCATAGGCTTCAATGGCGACGTTGGAGAAGTCGAATATCTTCTTTTCCATAAGAATCCTCTCTCCATTTCTCAGATGTCCAAAACTATCTCTAACGACCCAGTGAAATTCAGCTCTGCTTTGAGTGGATATATAGAGGCAGTTGAGGGCTTAGCATGTGAGATATTGGATTTGATTGCAGAAGGGTTGTGGGTCCCAGACACTCAAGTTTTCAGCAGACTCATCAGAGACGTTGACAGTGACTCAGTTCTCAGGCTCAATCACTACCCGCCTGTGATCAAAGGCTGCAGAGATAGGGACACGTCATCCTCCGAAGTTGGGTTTGGAGAGCATTCTGACCCTCAGATCTTGACCCTACTTCGATCCAACGATGTGGGTGGCCTCCAGATCTCCACTCTCGATGGGGTGTGGCTCCCTGTCACTCCTGACCCCACTGCCTTCTGTGTTAATGTTGGCGATGCATTGCAGGCGATGACGAACGGGAGATTTGTGAGCGTGAGACATAGAGCCATGACGAACCACCACAAGGCGAGGCTGTCGGTAGGGTATTTTGGGGCACCACCTCTGCAGCAGAGCATAATTGCAGTGCCTGAGGTGGTGGAGAGGCAGGCTGAGAGGCCTTGTCTGTACCGGCCGTTCACTTGGGAGGAATATAAGAAGACTACCTATTCACTAAGGCTGGGTGACACTAGGCTTTCACTTTTCAAAACTGGCTCTTAA 993 49.35 MVAVSPNPVYGEVVSRDVVELPVIDLSAERSEVAKLMVKACEDYGFFKVINHGVSKDLIAHLEEESFKFFAKPQSEKKAAGPANPFGYGCKTIGFNGDVGEVEYLLFHKNPLSISQMSKTISNDPVKFSSALSGYIEAVEGLACEILDLIAEGLWVPDTQVFSRLIRDVDSDSVLRLNHYPPVIKGCRDRDTSSSEVGFGEHSDPQILTLLRSNDVGGLQISTLDGVWLPVTPDPTAFCVNVGDALQAMTNGRFVSVRHRAMTNHHKARLSVGYFGAPPLQQSIIAVPEVVERQAERPCLYRPFTWEEYKKTTYSLRLGDTRLSLFKTGS 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 575082 578097 + BLOR00042 Blo01g00042 54482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00042 330 Pfam non-haem dioxygenase in morphine synthesis N-terminal 21 88 IPR026992 -
Blo01g00042 330 Pfam 2OG-Fe(II) oxygenase superfamily 172 275 IPR044861 -
Blo01g00042 330 Gene3D - 6 317 IPR027443 -
Blo01g00042 330 SUPERFAMILY Clavaminate synthase-like 13 320 - -
Blo01g00042 330 PRINTS Isopenicillin N synthase signature 37 54 - -
Blo01g00042 330 PRINTS Isopenicillin N synthase signature 238 264 - -
Blo01g00042 330 PRINTS Isopenicillin N synthase signature 202 223 - -
Blo01g00042 330 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 6 5 328 - -
Blo01g00042 330 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 5 328 - -
Blo01g00042 330 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 170 278 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00042 K04125 GA2ox; gibberellin 2beta-dioxygenase [EC:1.14.11.13] - tcc:18603710 471.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00042 Blo-Chr1:575082 Blo07g00601 Blo-Chr7:18076095 6.97E-131 dispersed
Blo01g00042 Blo-Chr1:575082 Blo07g00999 Blo-Chr7:29536654 3.57E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g30 Blo01g00042 . . Bda08g00321 . . . Bma05g01009 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001435 2 2 2 2 3 2 3 2 2 2 2 2 3 2 2 3 2 6 3 2 2 2 2 3 4 2 2 2 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00042 Blo_Chr01 FPKM 15.381223 20.531776 24.217342 23.159372 21.524189 22.457064 21.85034 36.004333 36.391621 34.150249