Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00045 ATGTCTTCTCAGGAGCCTGATGATAAAGTGGATGTTCCAAACAGTGAAGATGGAAATGATATATTACTTTCAGCAAATGAAAATCAGGGGAATCACAAAGGTGGAAAGCCTTCCAAGCTGGGTAAAGCTCAGTTTGCTGGTGGTCGTGCCAAACAAGCCACTTTGAAGATTGTTCTTGGAGAGGCGTTAGGTTATGGACCTGCACTTTCTGAGCATATTATATTAGAGGCTGGTCTACTACCAAACATGAAGTTGCCCAAAGATTACAAAATAAACGATGAACTGCTTCATCTTTTGATCCAAGCAATAGCAAAATTTGAAGACTGGCTTGAGGATATTATATCTGGTAACAGAGTTCCGGAAGGGTTCATTTTAATGCAGAACAAAGCTAGCCCCCCAAATGCCATTGACAGTACTAGCGAGATTTATGATGAATTTTGCCCTGTTTTATTGAATCAATTCATGTCCAGGAAGTATGTTAAGTTTGAGGTATTTGATGCGGCTTTGGATGAATTCTACAGTAAAATTGAGACTCAAAGGTCAGAACAGCAACAAAAGACTAAGGAGAACTCTGCCTTTCAGAAGCTCAATAAAATCCGCTTGGATCAAGAAAATCGTGTGCAAACTCTGAAACAAGAAGTTGATAGATGTGTTAAACTGGCTGAATTGATTGAATACAATTTAGATGACGTGGATGCTGCTATATTAGCTGTTCGTGTTGCCCTTGCAAAGGGCATGAGTTGGGATGATCTTACTCGTATGGTGAAAGAAGAGAAGAAATCTGGGAATCCTGTGGCTGGCCTTATCGACAAACTTTATCTAGAAAGGAATTGCATGACTTTGCTGTTGAGCAACAACCTTGATGAAATGGATGATGACGAGAAGACACTTCCAGTTGACAAGGTTGAAGTTGATCTGTCACTTAATGCACACAGCAATGCTCGACGATGGTATGAACAGAAGAAAAAACAGGAAAGCAAACAAGAGAAGACTGTAACAGCTCATGACAAGGCATTTAAAGCTGCTGAAAGAAAAACTCGGCTTCAGCTTTCCCAGGAAAAAACTGTAGCAACAATTTCTCACATGCGGAAAGTTCATTGGTTTGAAAAATTTAATTGGTACATTAGCAGCGAGAACTATTTGGTTATCAGTGGACGTGATGCGCAACAAAATGAGATGATAGTGAAACGATACATGTCGAAAGGAGATCTGTATGTCCATGCTGATCTGCATGGGGCTTCTAGTACAGTAATAAAGAATCACAGGCCGGAACAACCTGTTCCTCCTCTTACTTTAAACCAAGCAGGATGTTTTACGGTTTGCCACAGCCAAGCATGGGATTCAAAAATGGTCACTAGTGCTTGGTGGGTTTATCCTCATCAGGTCAGTAAAACTGCCCCTACAGGAGAATACCTTACAGTCGGTAGTTTCATGATACGTGGGAAAAAGAATTTTCTTCCTCCACACCCTCTTATTATGGGTTTTGCATTGTTATTTCGCTTGGATGAGAGCTCCTTGGGATCACATTTAAATGAAAGAAGAGTGAGAGGTGAGGAAGAAGGAATGGATGAAATTAAAGAAAGTGGGACTGTAATTGAAGAATCTGATTCTGACTCAGAGAAAGAACGTGAGGACATAAATGCTCATACAACTAGACCGCTAGATAATTCATCAGATTCCAGAAATAATAACAGACCTATTTCTGATACCGAAGCTTCTAATGTGTTGAATGATAAATTCATTGGAAACAATATGACCTTGAATATTTCAGATAAGGGTAATGGACCTGATATTAAATATGTTTCTTCCCCACAACTTGAGGATCTCATTGATAGAGCTCTTGAGCTTGGATCTGCTGCCACAGGCAGTAAAATTTATGGACATCAGACTTCTCAGGTTGATTTGATAGAGGAACATAATCCTGAAGACAAAAAAGCTATTGCCAGAGAGAAACCTTACATTTCAAAAGCTGAAAGAAGAAAGCTCAAGAAAGGCCAAAAGGGTAGTGATGCGGGTGTAAGTGTTGAGCAGGAAAATGAACAACTAGAAGAAAATGATGCGGTTGTTAGTCAGTTTGAGCAAAATATTCATAATACCAAACCAAATTCTGGAAAAATTAGTCGTGGGCAACGAGGCAAACTTAGAAAAGTGAAGGAGAAGTACGCGGATCAAGATGAGGAAGAAAGAAGCATTAGAATGGCTTTACTGGCTTCAGCCGGAATAGGAAACAAGACTAACAGAGAGTTACCAAATGTGAAAGCAGAGATAGAGATCGAGAAGAAACCTGATAGAGGCTCTGATGATGCTCCAAAAATATGCTACAAGTGTAAGAAGGCAGGTCACTTATCTCGGGATTGCCAAGAGCATCCTGCTGAAAATTTAAATAGTCATTCCAATGAAGGAGTTGAAGGCCATCTTCGCTCAAGGGTGGATGATACCACTGAAATGGACAGGGTACCCATGGAGGAGGAGGATATTCATGAGATAGGTGAAGAGGAGAAAGAGAAATTGAACGATGTGGATTACTTGACTGGGAATCCATTGCCCAACGATATTCTGTTGTATGCCGTTCCAGTTTGTGGTCCTTACAGTGCCGTTCAATCTTATAAGTACCGTGCGAAGATCATTCCAGGCACAGCGAAGAGAGGAAAAGCTGCAAAAACAGCCATGAATTTGTTCAGCCACATGTCGGAAACAACAAGTAGAGAGAAGGAATTGATGAAAGCGTGTACGGATCCGGAGCTGGTTTCGGCCATCATTGGGAATGTGAAGATAACTTCGGCGGGTCTTACACAACTGAAGCAGAAGCAGAAGAAAGGAAAGAAAATCAACAAAGCAGAAAGCTGA 2847 40.74 MSSQEPDDKVDVPNSEDGNDILLSANENQGNHKGGKPSKLGKAQFAGGRAKQATLKIVLGEALGYGPALSEHIILEAGLLPNMKLPKDYKINDELLHLLIQAIAKFEDWLEDIISGNRVPEGFILMQNKASPPNAIDSTSEIYDEFCPVLLNQFMSRKYVKFEVFDAALDEFYSKIETQRSEQQQKTKENSAFQKLNKIRLDQENRVQTLKQEVDRCVKLAELIEYNLDDVDAAILAVRVALAKGMSWDDLTRMVKEEKKSGNPVAGLIDKLYLERNCMTLLLSNNLDEMDDDEKTLPVDKVEVDLSLNAHSNARRWYEQKKKQESKQEKTVTAHDKAFKAAERKTRLQLSQEKTVATISHMRKVHWFEKFNWYISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFALLFRLDESSLGSHLNERRVRGEEEGMDEIKESGTVIEESDSDSEKEREDINAHTTRPLDNSSDSRNNNRPISDTEASNVLNDKFIGNNMTLNISDKGNGPDIKYVSSPQLEDLIDRALELGSAATGSKIYGHQTSQVDLIEEHNPEDKKAIAREKPYISKAERRKLKKGQKGSDAGVSVEQENEQLEENDAVVSQFEQNIHNTKPNSGKISRGQRGKLRKVKEKYADQDEEERSIRMALLASAGIGNKTNRELPNVKAEIEIEKKPDRGSDDAPKICYKCKKAGHLSRDCQEHPAENLNSHSNEGVEGHLRSRVDDTTEMDRVPMEEEDIHEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYSAVQSYKYRAKIIPGTAKRGKAAKTAMNLFSHMSETTSREKELMKACTDPELVSAIIGNVKITSAGLTQLKQKQKKGKKINKAES 948
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 603195 609287 + BLOR00045 Blo01g00045 54485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00045 948 MobiDBLite consensus disorder prediction 512 571 - -
Blo01g00045 948 Pfam NFACT protein RNA binding domain 370 481 IPR008532 -
Blo01g00045 948 MobiDBLite consensus disorder prediction 1 15 - -
Blo01g00045 948 MobiDBLite consensus disorder prediction 789 808 - -
Blo01g00045 948 MobiDBLite consensus disorder prediction 1 43 - -
Blo01g00045 948 MobiDBLite consensus disorder prediction 658 680 - -
Blo01g00045 948 Pfam Zinc knuckle 772 787 IPR001878 GO:0003676|GO:0008270
Blo01g00045 948 ProSiteProfiles Zinc finger CCHC-type profile. 773 788 IPR001878 GO:0003676|GO:0008270
Blo01g00045 948 MobiDBLite consensus disorder prediction 551 571 - -
Blo01g00045 948 MobiDBLite consensus disorder prediction 696 721 - -
Blo01g00045 948 MobiDBLite consensus disorder prediction 512 550 - -
Blo01g00045 948 SMART c2hcfinal6 772 788 IPR001878 GO:0003676|GO:0008270
Blo01g00045 948 MobiDBLite consensus disorder prediction 19 33 - -
Blo01g00045 948 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 43 936 - -
Blo01g00045 948 Pfam NFACT protein C-terminal domain 833 925 IPR021846 -
Blo01g00045 948 Gene3D - 767 823 - -
Blo01g00045 948 Coils Coil 675 695 - -
Blo01g00045 948 PANTHER - 43 936 - -
Blo01g00045 948 Coils Coil 193 213 - -
Blo01g00045 948 SUPERFAMILY Retrovirus zinc finger-like domains 763 789 IPR036875 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00045 K24971 NEMF, RQC2; nuclear export mediator factor NEMF - vvi:100267050 1308.12
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g26 Blo01g00045 . . Bda08g00319 . . . Bma05g01011 . Cmo17g00377 . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . Chy11g01596 . . . . . Bpe05g00809 . . . . . . . Cma17g00388 . Car17g00358 Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01512 . . Cme11g02101
Vvi5g199 Blo01g00045 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009988 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 3 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00045 Blo_Chr01 FPKM 2.854396 3.036204 5.776562 5.440903 3.556639 2.80673 3.52982 0.130784 0.221672 0.24577