Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00046 ATGGCGTCCTTCACTCACCAATTCACTGGACTTAGATTTGCTTCTCCATTTTTGCCTCGCTTGTCCAAGCCTCTATCCAGGCCTACCTCCCACCACAAGTCCAGGTTTTCTGTTGTCTCCGCTGCACCTTCTCCCGTTTCCAATGCCCAGACCAGAGAGCGCCTCAAACTCAAGGAGCTATTCGAGGAGGCATACGAACGCTGTCGCACTGCTCCCACCGAAGGTGTCTCTTTCACTTTCGAAGACTTCAATGCCGCTCTTGATAAGTACGACTTCGAATCTGAAATTGGGATGAAGTCTAAAAGACATAAAAATATCACTCTTTTCTTCTTATTCCAAATGCACCACAACATACATTTACCTAATTATCAAGATGAGCTAATTAAAGGAACGGTGTTCTGTACCGAGGCAAATGGGGCATTAGTTGACATCACTGCCAAGTCATCGGCATACTTACCTGTTCAAGAGGCTTGCATTCACAAAATAAGACACGTAGAAGAAGCAGGCATATATCCTGGTCTGAGAGAAGAATTTATAATCATTGGTGAAAATGAATCTGATGATAGTTTAGTACTTAGCTTGAGATCTATCCAGTATGATCTTGCTTGGGAGCGATGTAGGCAACTTCAGGCTGAGGATATAGTTGTCAAGGGTAAGGTTGTTGGTGCAAACAAGGGTGGAGTAGTGGCGGTTGTGGAAGGTCTGAGAGGATTTGTTCCTTTCTCACAGATATCCACGAAATCAGCTGCGGAGGAGCTTCTTGAGAAGGAACTTCCTCTGAAATTTGTGGAGGTGGATGCAGAACAGACGAGACTTGTCCTCAGCAACCGCAAAGCAATGGCTGATAGCCAGGCACAGCTAGGAATTGGATCAGTCGTCACTGGAACTGTTCAGAGCTTGAAACCTTATGGTGCCTTTATCGACATTGGTGGAATCAATGGTCTTCTTCATGTCAGTCAGATCAGTCACGATCGTGTCTCTGATATTGGTACAGTTTTTCAACCGGGCGATATTCTCAAGGTTATGATTCTGAGTCATGATCGTGAGAGAGGTCGAGTCAGTCTTTCTACCAAGAAGTTAGAACCTACTCCTGGCGACATGATTCGCAACCCAAAACTTGTTTTCGAGAAGGCAGAGGAGATGGCGCAGACATTCAGACAAAGAATAGCTCAAGCTGAAGCAATGGCCAGGGCCGACATGCTTAGATTCCAGCCCGAGAGTGGATTGACCCTTAGCTCTGATGGGATATTGGGTCCACTAACATCAGACTTGCCTGTGGAGGGTTTGGATTTGAGCGATCTCCCCCCTACTGATGAGCCATAA 1323 46.03 MASFTHQFTGLRFASPFLPRLSKPLSRPTSHHKSRFSVVSAAPSPVSNAQTRERLKLKELFEEAYERCRTAPTEGVSFTFEDFNAALDKYDFESEIGMKSKRHKNITLFFLFQMHHNIHLPNYQDELIKGTVFCTEANGALVDITAKSSAYLPVQEACIHKIRHVEEAGIYPGLREEFIIIGENESDDSLVLSLRSIQYDLAWERCRQLQAEDIVVKGKVVGANKGGVVAVVEGLRGFVPFSQISTKSAAEELLEKELPLKFVEVDAEQTRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIGTVFQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPVEGLDLSDLPPTDEP 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 610816 613721 + BLOR00046 Blo01g00046 54486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00046 440 Coils Coil 375 395 - -
Blo01g00046 440 CDD S1_RPS1_repeat_hs4 290 358 - -
Blo01g00046 440 CDD S1_RPS1_repeat_ec2_hs2 213 277 - -
Blo01g00046 440 ProSiteProfiles S1 domain profile. 213 277 IPR003029 GO:0003676
Blo01g00046 440 SUPERFAMILY Nucleic acid-binding proteins 289 368 IPR012340 -
Blo01g00046 440 Gene3D - 284 362 IPR012340 -
Blo01g00046 440 ProSiteProfiles S1 domain profile. 125 195 IPR003029 GO:0003676
Blo01g00046 440 ProSiteProfiles S1 domain profile. 290 358 IPR003029 GO:0003676
Blo01g00046 440 PANTHER 30S RIBOSOMAL PROTEIN S1 128 439 - -
Blo01g00046 440 PANTHER 30S RIBOSOMAL PROTEIN S1 1 101 - -
Blo01g00046 440 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 128 439 - -
Blo01g00046 440 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 101 - -
Blo01g00046 440 MobiDBLite consensus disorder prediction 421 440 - -
Blo01g00046 440 SMART S1_6 211 277 IPR022967 -
Blo01g00046 440 SMART S1_6 123 195 IPR022967 -
Blo01g00046 440 SMART S1_6 288 358 IPR022967 -
Blo01g00046 440 Pfam S1 RNA binding domain 289 358 IPR003029 GO:0003676
Blo01g00046 440 Pfam S1 RNA binding domain 212 275 IPR003029 GO:0003676
Blo01g00046 440 SUPERFAMILY Nucleic acid-binding proteins 125 221 IPR012340 -
Blo01g00046 440 SUPERFAMILY Nucleic acid-binding proteins 208 281 IPR012340 -
Blo01g00046 440 Gene3D - 120 206 IPR012340 -
Blo01g00046 440 Gene3D - 207 283 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00046 K02945 RP-S1, rpsA; small subunit ribosomal protein S1 - csv:101222582 626.706
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00046 Blo-Chr1:610816 Blo12g00385 Blo-Chr12:20428918 1.47E-51 dispersed
Blo01g00046 Blo-Chr1:610816 Blo18g00143 Blo-Chr18:1318403 3.18E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g4 Blo01g00046 . . Bda08g00326 . . . Bma05g01013 . . . . Car06g01340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g00229 . Bpe13g00710 Bma02g00941 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g25 Blo01g00046 . . Bda08g00318 . . . Bma05g01012 . Cmo17g00378 Cma06g01576 . Car06g01339 . Sed02g1123 Cpe08g00140 . Bhi01g01107 Tan10g1093 Cmetu03g1502 Lac11g1008 Hepe05g1360 . Lcy11g1322 Cla06g00406 Cam06g0428 . . Clacu06g0414 Cmu06g0414 Cre06g1194 . Cone15ag0714 Cone7ag0089 . Lsi05g01405 . . Cme06g00815 . . . . Bpe05g00810 . . . . Cmo06g01570 . . Cma17g00389 . Car17g00359 Cpe12g00340 . Bhi12g01965 Tan06g2800 . . . . Lcy12g0886 Cla05g00723 . . . . Cmu05g0745 . . Csa03g01535 Chy06g00772 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002885 2 7 1 1 2 2 1 2 1 1 2 2 1 2 1 1 2 2 1 2 1 1 2 1 2 2 1 5 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00046 Blo_Chr01 FPKM 0.0 0.0 0.0 0.0 6.178503 3.990626 6.663469 8.556732 11.994185 9.339485