Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00054 ATGTTTCAGAAGTTCACCGCTAAGGACTCCGATGGAATTTCCCTTTTAGACTCTGTTGAGGAAGTTATAACCAACCATAAAAGTCTTTCAAAGACACCCAGTTTCGTTTCTTCAATCTACAATCTTGAGCTGGGAATAACCAGTATCATTGGTGCTTCCATTGATTTCTATCGCCATGGCAGAAGGAGATGTGGAATTGAAGGTTATGCGTTGAGAGCGAATTCGTGGAAAATTTCGGAGGTTTTGGCCATGGATAGTAGCGTTCAAGGAATGCTTACTGGTTCGGAGATTCATGGATTTCATACGTTGAAAGATTTGGATATGAGAAACATTATGGATGAAGCAAATATGAGATGGCTCCGGCCCAATGAAATTCATGCCATACTTTGTAATCACAGATACTTCAACATCAATGTCAAACCATTGAACTTGCCCCCGGGTGGTACTATAAAGTTATTTGATCGTAAGATGCTTAGGAACTTCAGGAAGGATGGTCACAACTGGAAAAAGAAAAAGGATGGGAAGACAGTCAAAGAAGCACATGAGCACCTAAAAGTTGGCAATGAAGAAAGGATCCATGTATATTATGCACATGGACAGAATGCTCCAACCTTTGTCCGTCGGTGCTATTGGCTTCTTGATAAGAGTCTGGAACACATAGTTCTTGTTCATTACCGTGAAACACAAGAGAGTTCTCCAGCCACCCCTGTGAATTGTAATTCTAGTTCTGTCTCTGACCATTCTGCCCCCTCTCGTTTATCTGAGGAACTTGATTCTGGGACTGACCAAGCTCCTCGTGTTGGGGAAAATGAACTTCTAGTGCCTCATAATAATTTAACTGTGAAGAGTTATGAGCAAAGACTTCATGAAATTAACACGCTCGAATGGGATGAGCTTCTTGTAACAGATGATATTTCCAATACACCTAAAGGAGATGGCAAAGTCTGTTTTGACCGACAAAATCAAGTTGCAGCAAATGATTCCACTATTGGAGGAGGCAAGAATTTATTGGTGGAATGTCCTACATTTGACGATATAAGTGGTTCAATTGGGAGGTATAACACAAGTTATTTGGGTTCAACAAACAGCACCTACATATCTACATCGGTTAGTCAATTGAATTCAAATGCACAGAAAGGGAATTTCATATCAATGTCCTCCACTGATTCCTCGAGTCTTGGGGTCCACGAGGGTTTGCAAAGTCAGGATAGTTTTGGGCGGTGGATAAATGACATTATCTCTGACTCTCCTGGTTCAGTAGATGATTCAGCTTTTGAGCCCTCCATTTTATCTTCTTATGAGGAATTTACCTCTGCTGCTATAAATCATCATCAATCTTCTATTCCAGAACAAATTTTTGACATAACTGATATCTCTCCTGGATGGGCATTTACAACAGAAAGAACCAAGATTTTGATAACTGGATTCTTTTATGACGAGTTTGCTCATCTGGCTAAATCCAGTTTGTTTTGTGTCTGCGGCGATGTTTGTATTCCTATAGAAGTTGTTCAACTTGGAGTATATCGGTGCCTGGTACCACCACATCCACCTGGCTTTGTAAATCTATATCTCAGTTTAGAAGGTCAAAAACCAATAAGCCAAGTTCTGAATTTTGAGTATCACACCAAATTACTGGATGGTTCAGGAGTTTCTTTAGAAGAAAAAGATAGGTGGGAGGAGTTCCAATTACAGATGAGGCTTCTTGGTTTGCTTTTTTCTACATCTAAGAGCCTGAGCATTCTATCTAGTAAAGTATCACCAACCGCCCTGAAGGTAGCGAAGAACTTTGCTCAAAAAACCTCTAACATTGCCAATAGTTGGGCTTATTTGCACAAATCAATTCAAGATAATAAAATTTCATTTCCATTTGCAAAAGATGGATTATTGGAATTAATTTTAAAGAATAGGGTAAGGGAATGGCTATTAGAAAGAATTGTTGAAGGCTCCAAGAAGAGCACGGACTTTGATGCCCAAGGTCAAGGAGTAATTCACTTATGTGCCATTCTGGAATATTCATGGGCTGTACAGTTATTTGCTTGGTCGGGTTTAGCATTGGATTTTCGGGACAAATTTGGATGGACAGCCCTTCACTGGGCAGCATACTACGGAAGGGAGAAAATGGTTGCAGTTCTTCTATATGCGGGAGCAAAGCCGAACTTGGTCACAGATCCAACCCCAGAAAATCCTGGGGGATGCACAGTTGCTGATCTTGCATCTTTGAAGGGCCATGACGGCTTGGCTGCCTATCTTTCAGAAAAGGCTTTAGTATCACATTTTCAGGAAATGAGTATAGCTGGGAATGTCAGTGGTACACTGCGAACTAGCACAACTGAGGAGAGTGTAAACTCTGAGAACCTCAAAGAGGACGAGCTATTTATGAAAGATAGTTTGGCAGCTTACACAACTGCTGCCGATGCAGCAGCACGTATACAGGCTGCATTTCGTGAACATTCTTTCAAGCAAAGATCTAAAGAAGTTAAGTTTTCAAATTCAGAGAATGAAGCACGCAATATTATTGCAGCAATGAAAATTCAACATGCATTCCGTAATTATGAAATGCGACGGAAAATGGCAGCTGCTGCTCATATACAACACAGATTCCGTACTTGGAAATTGCGTAAAGATTTCCTGACAATGCGAAGGCAAGCTATCAAAATTCAAGCTGCATTCCGAGGTTTTCAAATGCGGAGGCAATACAGTAAAATTATTTGGTCGGTAGGTGTGCTTGAGAAAGCTATACTGCGATGGCGGTTGAAGAGAAAAGGCTTTCGTGGACTTCAAGTTGAACCTGTCGAATCACCTGCCGAGCAGGGACGGGAAAGTGATGCGGAGGAGGATTTTTATCGCGCAAGCCAGAGACTAGCAAGTGAGCGTGTTGAGAGATCCGTTGTACGAGTTCAGGCCTTGTTTCGCTCAAAGAAAGCACAAGAAGATTATCAGAGGATGAAGATTGCCCATCTGGAAGCGAAGCTGGAATATGAAGGAATTTTCGATCCTGAATCTTATATGCATTCTTGA 3018 41.25 MFQKFTAKDSDGISLLDSVEEVITNHKSLSKTPSFVSSIYNLELGITSIIGASIDFYRHGRRRCGIEGYALRANSWKISEVLAMDSSVQGMLTGSEIHGFHTLKDLDMRNIMDEANMRWLRPNEIHAILCNHRYFNINVKPLNLPPGGTIKLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQNAPTFVRRCYWLLDKSLEHIVLVHYRETQESSPATPVNCNSSSVSDHSAPSRLSEELDSGTDQAPRVGENELLVPHNNLTVKSYEQRLHEINTLEWDELLVTDDISNTPKGDGKVCFDRQNQVAANDSTIGGGKNLLVECPTFDDISGSIGRYNTSYLGSTNSTYISTSVSQLNSNAQKGNFISMSSTDSSSLGVHEGLQSQDSFGRWINDIISDSPGSVDDSAFEPSILSSYEEFTSAAINHHQSSIPEQIFDITDISPGWAFTTERTKILITGFFYDEFAHLAKSSLFCVCGDVCIPIEVVQLGVYRCLVPPHPPGFVNLYLSLEGQKPISQVLNFEYHTKLLDGSGVSLEEKDRWEEFQLQMRLLGLLFSTSKSLSILSSKVSPTALKVAKNFAQKTSNIANSWAYLHKSIQDNKISFPFAKDGLLELILKNRVREWLLERIVEGSKKSTDFDAQGQGVIHLCAILEYSWAVQLFAWSGLALDFRDKFGWTALHWAAYYGREKMVAVLLYAGAKPNLVTDPTPENPGGCTVADLASLKGHDGLAAYLSEKALVSHFQEMSIAGNVSGTLRTSTTEESVNSENLKEDELFMKDSLAAYTTAADAAARIQAAFREHSFKQRSKEVKFSNSENEARNIIAAMKIQHAFRNYEMRRKMAAAAHIQHRFRTWKLRKDFLTMRRQAIKIQAAFRGFQMRRQYSKIIWSVGVLEKAILRWRLKRKGFRGLQVEPVESPAEQGRESDAEEDFYRASQRLASERVERSVVRVQALFRSKKAQEDYQRMKIAHLEAKLEYEGIFDPESYMHS 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 683203 705843 - BLOR00054 Blo01g00054 54494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00054 1005 Pfam IPT/TIG domain 455 540 IPR002909 -
Blo01g00054 1005 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 99 999 - -
Blo01g00054 1005 SMART iq_5 878 900 IPR000048 GO:0005515
Blo01g00054 1005 SMART iq_5 855 877 IPR000048 GO:0005515
Blo01g00054 1005 SMART iq_5 958 980 IPR000048 GO:0005515
Blo01g00054 1005 ProSiteProfiles IQ motif profile. 856 885 IPR000048 GO:0005515
Blo01g00054 1005 Gene3D - 607 754 IPR036770 -
Blo01g00054 1005 ProSiteProfiles IQ motif profile. 803 832 IPR000048 GO:0005515
Blo01g00054 1005 Pfam IQ calmodulin-binding motif 881 899 IPR000048 GO:0005515
Blo01g00054 1005 ProSiteProfiles IQ motif profile. 879 903 IPR000048 GO:0005515
Blo01g00054 1005 ProSiteProfiles IQ motif profile. 960 988 IPR000048 GO:0005515
Blo01g00054 1005 ProSiteProfiles Ankyrin repeat region circular profile. 691 719 - -
Blo01g00054 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 804 906 IPR027417 -
Blo01g00054 1005 Pfam CG-1 domain 115 227 IPR005559 GO:0003677
Blo01g00054 1005 Pfam Ankyrin repeats (3 copies) 640 720 IPR002110 GO:0005515
Blo01g00054 1005 Gene3D Immunoglobulins 448 544 IPR013783 -
Blo01g00054 1005 SUPERFAMILY Ankyrin repeat 655 753 IPR036770 -
Blo01g00054 1005 MobiDBLite consensus disorder prediction 231 258 - -
Blo01g00054 1005 ProSiteProfiles CG-1 DNA-binding domain profile. 108 234 IPR005559 GO:0003677
Blo01g00054 1005 SMART CG_1_2 111 229 IPR005559 GO:0003677
Blo01g00054 1005 ProSiteProfiles IQ motif profile. 840 866 IPR000048 GO:0005515
Blo01g00054 1005 SUPERFAMILY E set domains 455 540 IPR014756 -
Blo01g00054 1005 SMART ANK_2a 691 720 IPR002110 GO:0005515
Blo01g00054 1005 SMART ANK_2a 730 759 IPR002110 GO:0005515
Blo01g00054 1005 MobiDBLite consensus disorder prediction 231 267 - -
Blo01g00054 1005 ProSiteProfiles Ankyrin repeat profile. 691 723 IPR002110 GO:0005515
Blo01g00054 1005 Gene3D - 856 903 - -
Blo01g00054 1005 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 99 999 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00054 K21596 CAMTA; calmodulin-binding transcription activator - jre:108994781 1221.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00054 Blo-Chr1:683203 Blo13g00257 Blo-Chr13:11839242 4.73E-29 dispersed
Blo01g00054 Blo-Chr1:683203 Blo12g00279 Blo-Chr12:16649107 1.53E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo13g00257 . 579 1213 CAMTA Transcription Factor Family AT5G09410 55.9 5.0e-172 602.1
Blo01g00054 . 111 998 CAMTA Transcription Factor Family AT3G16940 53.0 7.4e-255 877.1
Blo01g00054 . 90 715 CAMTA Transcription Factor Family AT4G16150 54.7 1.1e-201 700.7
Blo13g00257 . 579 1213 CAMTA Transcription Factor Family AT5G09410 55.9 5.0e-172 602.1
Blo01g00054 . 90 715 CAMTA Transcription Factor Family AT4G16150 54.7 1.1e-201 700.7
Blo01g00054 . 111 998 CAMTA Transcription Factor Family AT3G16940 53.0 7.4e-255 877.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11796 PF03859 CG-1 1.10E-43 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00054 Blo_Chr01 FPKM 30.338543 33.281456 17.917101 18.581745 14.274217 16.539616 15.673149 16.11261 15.211417 15.606677