Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00056 ATGGCGATGGCGATCACGCGATTCGAGCTGGAGGCTGCATCCTGGACGGGCTGGCGCGGGCTCGGCCATTCATCTGCCTGGCTGGCTCGCCGGGCCAGCCCGCTAGGCTCGCGAGCTGGCCTGCAGGCCAGGCTCGCGAGCCCTCGATTTAGGGCTCAGCTCAGCCCGCCTACCGGGCTCGGGGCGAGCCCGCTTGTTTTCTTAGCGCCTAAGCCTGAATCTTTGTCATCTTCAATCTGGAGAAAGAGGCTGTTTGATTCTCCTAAAATTTTAATCCAAGCTAATATCTACCGGGATGAGGGCAATGTTGTAGATTTGTTTATCACGCTTCTTAGATTCTCGAGTTTGATAACTGAGACTATACCACATCATCGGGATTATCATGTTCTTTGTGCAAAAGAAAGAGGACTTCACAGGAAGGAAGTGTTGACTGTACTGGATGAGCTTGATTCTTTAAAGCCTGAATTTGATCTTCAAGTGAAAGAAATGGAAAGGGCACAAGGAGGACATCAACTGCTTGTACACGATGGCAAAAAGAGAATCTTACATGGTCTGGAGACATCTTCACAATGGCCGTCTGTTAATAAAAGTCAATCTTCTGTGATTGATCATAAACAACCTACAAGCTTACAACCATATTTATCATGGTCGAATAATTTTAATAACAATCCTGTTTCAACATCGACTACCTTACAAGTGGAGAAACAATTCCAGAAACTATCTTTTAATCTACCTCGTCCTAAACCTGAAACTTTGTCTAGACATTCTATTTTAGGACCTAATGGTCTTCAGGGACAGTGGAAAGGACCTAGAACAGATAAGGTTCAATATCCAAAAAAGCAAGAATTTGATCCTGAAAGTGCAAGGCCAAATCAAGATGTTCAATCTGATCTTGTAGCATCAAAAGATGGTAATCCAAGGGAGGGAAGCTCCATGATAGAATCGGTTCTCTCATTAGACGACGGTAGATGGTTACATCCAGCCGAGGAGTCATTCTCTTCCTTGATTACACCAGTACAAGAAGACTCCTTCCAGTTGGTTAATATCAAACAACCTTCTCCTCCTCCTATTCTTGCTAATGTTCAACAGAAATTGGCTCCCATTCCTCCATCGAAAGTTGCAGATCCAAGACCTGGTCTAGCAAAACCTTCTCAGGATGGCCCTGATTCATATCAACATTTACATGTTCCTGTACAAATGTTGGAGGATTTCTTGAGATTGGCTCGTGTAAATACACAAAAAAACTTGGAGACATGTGGTGTTCTTGCGGGGTCTCTAAAAAACAGGGTTTTCCATATCACTACTCTCATAATTCCAAAGCAAGAATCAACATCTGATTCGTGTCAAACATTGAATGAAGAAGAAATATTTGAAGTTCAAGACAGATTATCGCTTTTTACTCTTGGGTGGATCCATACACATCCTTCGCAAACCTGTTTTATGTCATCAGTTGACTTGCATACTCATTACTCATATCAGATTATGTTACCAGAAGCAATTGCAATAGTTATGGCCCCTACAGATACATCCTGTCCACACGGCATATTTCATCTTTCGGATCCTGGCGGTGTATCTGTGATTCGCAGTTGTCAACAGAGCGGATTTCATCCTCATGAAGAGCCTTCGGATGGAACTCCCATTTACGAGCATTGCTCTCATGTTTATATGAACTCCAAATTGAGGTTCAGCGTCGTCGATCTCCGGTAA 1707 43.47 MAMAITRFELEAASWTGWRGLGHSSAWLARRASPLGSRAGLQARLASPRFRAQLSPPTGLGASPLVFLAPKPESLSSSIWRKRLFDSPKILIQANIYRDEGNVVDLFITLLRFSSLITETIPHHRDYHVLCAKERGLHRKEVLTVLDELDSLKPEFDLQVKEMERAQGGHQLLVHDGKKRILHGLETSSQWPSVNKSQSSVIDHKQPTSLQPYLSWSNNFNNNPVSTSTTLQVEKQFQKLSFNLPRPKPETLSRHSILGPNGLQGQWKGPRTDKVQYPKKQEFDPESARPNQDVQSDLVASKDGNPREGSSMIESVLSLDDGRWLHPAEESFSSLITPVQEDSFQLVNIKQPSPPPILANVQQKLAPIPPSKVADPRPGLAKPSQDGPDSYQHLHVPVQMLEDFLRLARVNTQKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFTLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTSCPHGIFHLSDPGGVSVIRSCQQSGFHPHEEPSDGTPIYEHCSHVYMNSKLRFSVVDLR 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 721785 729014 + BLOR00056 Blo01g00056 54496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00056 568 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 89 568 - -
Blo01g00056 568 CDD MPN_AMSH_like 391 568 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Blo01g00056 568 Gene3D - 75 173 - -
Blo01g00056 568 ProSiteProfiles MPN domain profile. 394 524 IPR037518 -
Blo01g00056 568 Gene3D Cytidine Deaminase, domain 2 380 568 - -
Blo01g00056 568 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 390 497 IPR000555 GO:0005515|GO:0008233|GO:0008237
Blo01g00056 568 SUPERFAMILY JAB1/MPN domain 393 524 - -
Blo01g00056 568 MobiDBLite consensus disorder prediction 368 389 - -
Blo01g00056 568 PANTHER AMSH-LIKE PROTEASE 89 568 - -
Blo01g00056 568 MobiDBLite consensus disorder prediction 273 287 - -
Blo01g00056 568 SMART pad1_6 393 521 IPR000555 GO:0005515|GO:0008233|GO:0008237
Blo01g00056 568 MobiDBLite consensus disorder prediction 243 310 - -
Blo01g00056 568 Pfam USP8 dimerisation domain 87 155 IPR015063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00056 K11866 STAMBP, AMSH; STAM-binding protein [EC:3.4.19.12] - pvy:116122857 651.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00056 Blo-Chr1:721785 Blo04g00830 Blo-Chr4:8751540 1.10E-140 dispersed
Blo01g00056 Blo-Chr1:721785 Blo16g00741 Blo-Chr16:30083614 1.11E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g103 Blo01g00056 . . Bda08g00309 . . . Bma05g01019 Cmo08g01232 Cmo17g00347 . . . . . . . . . . . . . . Cla06g00441 Cam06g0468 Cec06g0474 . Clacu06g0455 Cmu06g0456 Cre06g1231 . . Cone7ag0112 Cone4ag0116 . Csa06g01758 Chy11g01553 . . . . . Bpe05g00819 . . . Sed04g1761 . . Cma08g01262 Cma17g00357 Car08g01132 Car17g00328 Cpe12g00309 Cpe17g00053 Bhi12g01907 Tan06g2735 Cmetu11g2266 Lac11g0914 Hepe03g0061 . Lcy12g0785 . . . . . . . Lsi09g01472 . . Cme11g02064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008620 2 1 1 1 1 1 2 0 1 1 1 1 1 1 0 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00056 Blo_Chr01 FPKM 22.378046 24.540867 13.23166 13.210778 17.697704 16.266134 18.130987 16.003786 14.637949 17.799807