Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00060 ATGAATCTGAATCACGGCAAGGCATCGATGCCGACGGCTATTTGTAGTGCTGCTCTCCAATCCGGCGAAGTTGTTTCCGACCAATTTCCGGCAGGTCTACGAGTTCTGGTCGTCGACGACGATCCGACCTGCCTGAGAATCTTGGATAAGATGCTTCAATATTGTCTCTACAACGTTACTACATGCAATCGAGCCGAGACTGCGTTGTCTAAGCTTCGAGATAACAAAAATGGATTCGATATCGTAATTAGTGATGTCCATATGCCGGACATGGATGGATTTAAGCTCTTAGAGCACATTGGCCTAGAAATGGACTTACCAGTTATCATGATGTCTGCCGATGAAGGCAAAGATGTTGTCATGAAGGGTGTCACTCATGGAGCTTGCGATTATTTAATAAAACCTGTTCGAATCGAAGCTTTGAAGAACATATGGCAACATGTAGTTCGGAAAAGGAAGAATGAGTGGAAGGATCTAGAACAATCCGGAAGTGTGGAAGACGGGGATCGGCAACTGAGACCATGTGAGGATGCAGATTACTCGTCCTCGTTAAATGATGGAAATTGCAAAAGCTCGAAGAGGAGGAAAGACGATGAAGAAGAAGCTGAGGAACGAGATGATTCGTCGACTTTGAAGAAGCCACGCGTGGTTTGGTCAATCGAGCTTCATCAGCAGTTCGTCGTAGCTGTTAATCAACTTGGCATTGAAAAGGCTGTTCCTAAGAAAATTTTGGAGTTGATGAATGTTCCGGGACTCACTCGAGAAAATGTTGCTAGTCATCTTCAGAAATATCGGTTGTATCTAAGGCGGCTAAGCGGAGTCACACAGCACCCTAGTAATTTGAACAATTCCTTCATTAGCCCACAAGAAGCAATTTTCGGGCCAGTTTCAGCGCTCAATGGGATCAATCTTCAGGCTCTTGCTGTGACCGGAAAACTCACACTCCAAAGTCTTGCCTCGCTGCAAGCTGCCAGCCTGAGTAGATCTTCTTCATCAAAATCCGGCGTAATTTCAGATCAGAGGAACATATTTAGCTTCGAAAATCCCAAACTGAGATTTGGTGAGGCCCAACCTCAGCATCTCAACAATAGTAAACCAATAAATTTACTGCATGGAATTCCCACCACCATGGAAGCAAAGCAGCTTGCGAATTTGAACCATGGAAGCATAAATATGCAAGGTAATATCCATGGAGGCCAAAGCAACTCTTTATTAACCCAGATGACTCAACCTCAATCATCAATCAGGCAGTCTGTTAGAATTCCAGGTGGGGTTCTGACAAACAATATGATTCCGCCGGAATCATCTATCTTCAGTTTTCCGGCAAGCCAAACAGCAGAATATCCGGGAAATAATTTGCCTCTGCAAACGGCTCCATCTAAAGGGCCATTCCTGGAAGAATCAAATCTAGAAACAAAGCAATCAGGACGATTTGTATCAAATTATGATATATTCGATGATTTGCAGAATTCCAGTTTGAACTTCAATCCCCCTCAAGGCGACCTGAACATCTCATCTTCGGGTTTATATCATCAAAGCTTTTCCTCCGGCCAAAGGATTAGACAAGAAAACGAAGTTTCTACAACTAGGCCTGAGAATGGACAGATCATCGGACAGCAACTAAATTCTTTTCTATTTGACAATCCAGTGAGGGTTAAAGCTGAGACAATCCCAGATCCAAGCTGTGTCTTATTCCCCGAAAACTTCATTCGGGACGATCTAATGAGTACCCTTTTCAGACAACAACAGGAGAATTTTGGGGCGGGATTGACTGAAAGCGACTACGATATCGACAGATCATTCTTGTTTTTTTATGAACTCAAAGTTGTTCTAGTTCTAGTTCTAGTTCTAGTGGTATTCTCTGAAGCTGTCTTCTGTCTGCCATTGAAGCATATCAACTTGTAA 1905 43.36 MNLNHGKASMPTAICSAALQSGEVVSDQFPAGLRVLVVDDDPTCLRILDKMLQYCLYNVTTCNRAETALSKLRDNKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADEGKDVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEDGDRQLRPCEDADYSSSLNDGNCKSSKRRKDDEEEAEERDDSSTLKKPRVVWSIELHQQFVVAVNQLGIEKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVTQHPSNLNNSFISPQEAIFGPVSALNGINLQALAVTGKLTLQSLASLQAASLSRSSSSKSGVISDQRNIFSFENPKLRFGEAQPQHLNNSKPINLLHGIPTTMEAKQLANLNHGSINMQGNIHGGQSNSLLTQMTQPQSSIRQSVRIPGGVLTNNMIPPESSIFSFPASQTAEYPGNNLPLQTAPSKGPFLEESNLETKQSGRFVSNYDIFDDLQNSSLNFNPPQGDLNISSSGLYHQSFSSGQRIRQENEVSTTRPENGQIIGQQLNSFLFDNPVRVKAETIPDPSCVLFPENFIRDDLMSTLFRQQQENFGAGLTESDYDIDRSFLFFYELKVVLVLVLVLVVFSEAVFCLPLKHINL 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 747686 750562 - BLOR00060 Blo01g00060 54500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00060 634 CDD REC_typeB_ARR-like 35 149 - -
Blo01g00060 634 MobiDBLite consensus disorder prediction 157 176 - -
Blo01g00060 634 MobiDBLite consensus disorder prediction 157 208 - -
Blo01g00060 634 Gene3D - 210 272 - -
Blo01g00060 634 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 413 - -
Blo01g00060 634 SMART REC_2 33 145 IPR001789 GO:0000160
Blo01g00060 634 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 413 IPR045279 GO:0009736
Blo01g00060 634 SUPERFAMILY CheY-like 32 156 IPR011006 -
Blo01g00060 634 Gene3D - 33 166 - -
Blo01g00060 634 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Blo01g00060 634 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Blo01g00060 634 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Blo01g00060 634 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Blo01g00060 634 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Blo01g00060 634 MobiDBLite consensus disorder prediction 189 208 - -
Blo01g00060 634 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g00060 Blo07g00160 CCT
Blo01g00060 Blo07g00160 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00060 Blo-Chr1:747686 Blo01g00772 Blo-Chr1:11099972 1.58E-128 dispersed
Blo09g00090 Blo-Chr9:1639199 Blo01g00060 Blo-Chr1:747686 2.73E-50 dispersed
Blo12g00090 Blo-Chr12:6259518 Blo01g00060 Blo-Chr1:747686 0 transposed
Blo12g00624 Blo-Chr12:24483144 Blo01g00060 Blo-Chr1:747686 1.25E-23 transposed
Blo01g00060 Blo-Chr1:747686 Blo07g00160 Blo-Chr7:2078173 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11798 PF00072 Response_reg 4.30E-23 CL0304 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00060 - K14491 qlo:115994534 719.924