Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00061 ATGGGTGTTTGTAGCTATGAATCAGAGGCCAGCAGCTCCATAGCTCCAGAAAAAGCGTTCCAGGTCTTCATCATTGATGCCGATACACTCCTCCCAAAGGCTATTCCTCAAGCAATCAAGAGCTGTGAAACCATTGAAGGAGATGGCGGTCCTGGCTCCATCAAAAAGATATCCTTCGTTGAAGGAAGTAAACATGGGTATATCAAGCACAAAGTGAACGTCGTAGACAAAGAAAAATTGTTCTATAGCTTCACCGTAATTGAAGGGGAAGGCATTGGAGAAAAGATAGAGAAAATAGAAAAGGAGATAAAGGTGGAAGCAAAGGAAGATGGAGGGTCCACCATCAAAACCACGAGCAAGTACTACACCATTGGAGACTACGAATTGAAGGAAGAGGAGATCGCTGTTATCAAAGGGAAGGGCTTGGGGCTATTCAAGGCCATTGAGGCATATCTGTTGGCCAACCCAGGCTCTTGCTGA 480 45.21 MGVCSYESEASSSIAPEKAFQVFIIDADTLLPKAIPQAIKSCETIEGDGGPGSIKKISFVEGSKHGYIKHKVNVVDKEKLFYSFTVIEGEGIGEKIEKIEKEIKVEAKEDGGSTIKTTSKYYTIGDYELKEEEIAVIKGKGLGLFKAIEAYLLANPGSC 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 759863 760492 - BLOR00061 Blo01g00061 54501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00061 159 CDD Bet_v1-like 5 152 - -
Blo01g00061 159 SMART Bet_v_1_2 1 155 IPR000916 GO:0006952
Blo01g00061 159 Pfam Pathogenesis-related protein Bet v 1 family 1 155 IPR000916 GO:0006952
Blo01g00061 159 PANTHER - 2 157 - -
Blo01g00061 159 SUPERFAMILY Bet v1-like 2 157 - -
Blo01g00061 159 PANTHER MAJOR ALLERGEN PRU AV 1-LIKE 2 157 - -
Blo01g00061 159 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Blo01g00061 159 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Blo01g00061 159 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Blo01g00061 159 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Blo01g00061 159 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Blo01g00061 159 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Blo01g00061 159 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Blo01g00061 159 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 89 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Blo01g00061 159 Gene3D - 2 157 IPR023393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00061 - - - tcc:18603574 177.948
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00061 Blo07g00161 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00061 Blo-Chr1:759863 Blo17g00585 Blo-Chr17:11331528 1.03E-58 dispersed
Blo01g00061 Blo-Chr1:759863 Blo02g00489 Blo-Chr2:7307919 3.52E-48 wgd
Blo01g00061 Blo-Chr1:759863 Blo07g00161 Blo-Chr7:2089299 2.75E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g116 Blo01g00061 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00451 Cam06g0481 Cec06g0485 Cco06g0484 Clacu06g0468 Cmu06g0468 Cre06g1242 . . . . . Csa06g01768 . . . Blo07g00161 . . Bpe05g00824 . . . . . . . . . . . . Bhi12g01895 Tan06g2720 . Lac11g0898 Hepe03g0073 . Lcy12g0774 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000275 21 4 4 20 7 3 2 3 3 2 2 3 2 2 2 2 3 9 2 3 2 5 3 3 4 3 5 1 5 15 145
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00061 Blo_Chr01 FPKM 25.765162 25.232618 19.42605 19.466637 27.121006 27.819292 27.735012 24.563381 27.986868 24.5634