Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00069 ATGAATCCAAACTCTTCTCCTTCTTCGTCGTCGAATCTATCCCCCGACAACAATAAACCAGGCCTCGATGCGATACGGGCGATTGTCGTTTCGATCAACCGTTACATTCTCGAGTTCTTGACAAATAGCAAAACAAGGAGTTTGCTAAAATTGAAATGTGCCTCCAAGCTAAGCAGTCAAAAGCAGGAGTTCTTCGAATTCTCCGACCAGTCGGTTCTGTCGAATCTTTACTGGGGCATCGAGAATATGGAAGCTGCAATTCAGGCCGATACGGAGGAAGAGAGAGAGTCCCGGCTGAAGAACTCAGAGCAAATGCTTCAGGTCCCGGCCCTTCTCGACGAGCAAAAACTAACTGTTGGAGTTCCAAACAGTTACTTAGTTTGCTGTTCGTACTTTTACCTTTCAATGGTGAAGAAGCTTCAGAGGAATGAGTTACAGGTTGCTCTGCATTTCCTCCAATCCCTAATGGTTGCTCCAAAGTTAATTCAGGAAGAATTTGCTCCAGAGCTATGCAGTAGTTTTCTCTCTTCAAACTGGGAAGAACCCAGAGAAAGATTCAGTGATGAAAAACATGTTAAAGCAATAAGGAAGATGGCAAGAACATACAAGAAATGGTTGATGTATTATCAGGTTATATTATATGGAGAATCTCCAATTTGGCACAAGAAATTCAGAGGTTCTTTGTCCGACGAACTCGAGCTGCAATGCCCGATTTACAGATCTGAAAATTCAGTGTCTGTTCATAGCAGGAATAGAGTATACCTTAGTGCAGAAACTCGTGATTCCAGTGGAGATGGACAGCCCTCAAAAAGTGTTTACCAATGTGAGAAGGTCCATTCACTCGATCCCATCAAGTCAATGGAGGACGTCATGGACGAACAAAGTCGATCATTGTATCAAGATTCAAATTTCAAAAAGGGCCCAAAAATAATTTCAAGTATGAAAAGCCTCCAGGGTATGGTGAAGGAAGTGAAGTCTTCTTCTGAAAGTGAAAGCCATGAAGTTGAGTATGTGCAGGAAAATTTGGATTATGCCAAACATTTCATGAGAAATGCGTACAATTCACTTCCAGAAATCGGTGATCGGAATTTGCAGCTCCCCATCTGTACATCCGGCCAAAAGCGAAAAGCGAAGCCTTTTCCGAGATGTCTACAAAAAAGTATTCAAGAACAAGATATCAAAGTACAAGTAACTGAGCTATTTACCAGCTCCATAAACGATTACAGCATATTTAGCTGGGACCATATAGAGGAAAAAACTGGTATTTTCAGTAATTGTCACGTCGAAGATGAACTAACATGGCGGGAAACGAAAGTCAACAAGTTCCAGCTCTTTGGCCATGCCCAAGCTACGTCTCTGAAGAACTGCATGGCCAAACAAATGAATCACCAGAAAATTGGTTTGAGGAGAGTAAAAAGCACACACTGCCAGAGAAATATAAGTGAAGTTTATTCCTTTTCCGAGAAAAAATCGAAGAGTGAGTTATCGGGATTGGTGAGAAGGACGATTTCAAAGCTAAGTTTCTCCGAAGAGATGGGAAAGTGGGATGAAGATTATGCTGTCGAAGTTTCAACAGTTTACCAAATGTTGAACAGCAAAACAGGAGTGAGGTATAACAAGCTGAAGGAAGTAATCATAAATAAACTGGTAAGAGGAATTTCTACCTCTAAAGAGGAGAAGATATTAAGAGCAGCTGTGTCGATATTGGTATCGATCATTTCCTCAAATGGCTCCGTCGTAGAAGATATCAAGAAGAACGGTTTACGGCTGTGCGATCTCGCAAGCGCGCTGAAGAAAAATGTGTACGAGGCGGCGATCCTCATCTATCTAATCAACCCAGCTCCTTCAGAAATCAAGTCTTTAGAGCTTCTACCGACGTTGGTCGAAGTTGTGTGCGGTTCAAACGATTATCAGGAACGTCCGGCATCGCTCCGGCTGACCCCACCGACGGCGTCATTAATGATTATCGAAGTTCTGGTGACTGCATTTGACGATGCCACTAACAATAAGCACTTGGCTGCTCTCAGCTCTCCCTCTGTTCTTTGTGGGCTTCTGGAATTCGCGACTATCCATAACGTCGAAGAGTTGATCTCTCTGGCCACTATTCTCGTAAAGTGCATCCAATTTGACGGAGAATGCAGAAAGTTCATGTCGGAATTCACTCCCGTCGCTCCATTTATCTATCTCCTCAAGTGTAACAGCGATCGGGCCATGTTCATAGCGCTTGAATTTCTCCATGAAGTCCTTCGCATTCCAAGGTCATCGGCGGTTTCGATGCTGCATAGGATTCGAAGAGAAGGAAGAAATGAATTGACGACCATGCTAATGTTTTGTGTTAAACACCTACAACCTGAGTATCAACTCATGGCAGCAAGCTTGTTGATTCAGCTATGCACCATGGATAGCAGCTCAAATACAGGTGAGTACAAAGAGGAGGCCATACAGACACTCATCAGATCAGTGGGATCTGAAGAATGTTCCAATTCACAGCTTCTGTCTGCTTCGATTTTATCAAATCTTGGAGGGACATTTTCCTGGACAGGGGAATCCTATACAGTTGCATGGCTGGTCAGGAAATCAGGATTGAGCTCCATCACTCACCAAAACATGATCAAGGATGTCAACTGGTCAGACCAGATCCTGCAGGATGCCGGAACGGACTCGTGGTCCAGCATGATTGCCGGACGCTTTATTGAAGTTGGTATTCCAGTCTTCCATGCCTTGGCAAATGGATTAAAGAGCAAAATAAAGAAGGTTTCTAGAGACTGCCTTGCGGCAGCTGCATGGCTTGGATGTGAAATCTCACGGAGTCCGGAGAGCACGAGATGTTCGGCCTGCGAGATTTTGTTGGGTGGATTTGAGCAGTTTTTGCACCCCGGATTGGAACTGGATGAACGGCTTCTCGCTTGTCTCTGTATATATAATTACACTTCAGGAAAAGGGATGCAAAACTTGATTCATTTTTCTGAAGGAGTGAGGGAGTCGTTAAGACGGCTTTCGAACGTAACCTGGATGGCAGAAGAATTGCACAAAGTAACAGATTACTTTCTGCCCAATAATTCAAGAATATCATGTGTTCACACTCAAATCTTGGAGATGGGTATCAGTAGCTGTGGGGCTGTGTGTTCTCTCATCTACTACAATGGACTACTCTACAGCGGATACTCGGACGGCTCGATAAAGGTTTGGAATATCAGCAGGCAATCGAGCATCCTTGTATGGGACGTAAAGGAGCACAAGAGGGCAGTCACATGCTTCACCCTTTCGGGTACAGGAGACAACCTTCTCAGTGGATCTGCAGATAAAACTATCCGGGTTTGGAGAATTGGGGAGAGGCAATTGGAGTGCATTGAAGTAATTACTTTAAAGGAACCAATTCAGCACATAGAATCATGTGGTCACATGATTTTTACTGTTACCCACAGGCGAGGGGTGAAGGTGTTTGACACCACCAGAGAAGTCAAAATCATTTGCAAGAATAAGCAGGTGAAATGCATAAAGGCAGTTCAGGGTAAAATCTATGCAGGCTGCATGGACTCAAGCATACAGGAATTCTCGATATCGAACAATCGAGAACAAGAGATCAAAGCCCCGTTGAAAAGTTGGAGAATTCTGCGCGATCCTATAAACACAATCGTCGTATATAAAGATTGGCTTTTCAGTGCCAATTCAACAGTACAAGGCTCACAATTGCAGGTGGGATTATGGATTGTCCAAATTATCATCCTGAGCTTTCAACTTACCAGAGGAATGGTGCAGGAATGGAGAAGACATTGCAAACCTCAGCTGTCGGTTGCGACTGGGAAAGGAGAAACTTTGCAGGCAATGGGTGTTGTTGAAGACTTTATATACTTAATCTCCAGATCATCAAAAAACATTCAGATTTGGTTGCGAAGAACGCAGCATAAAGTAGGGAGAATTTCGGTTGGCAGCCGGATAACGAGTCTACTCACAGGCAATGACATCATTCTATGCGGCACAGATACGGTTGGAGGGCAGCAGGGCAGTTCCCGCGATTTGTGCAGAGTCGGACTTCGCGATAGTCGGCGACGGCGGTGCTCCTCGGATCTGATCGACGGACGGCGCGCGGTTCTTCGCCGGACAGTTCGGCAGCTTCTGTCCTTCGACGATGGACGACGCAACACGGGAGACGTTTCGACGACGGCGCTGCGCTTCGGATCGGTGGGTTTTGTCGACGGCGCTGCGCTTCGGATCGGTGGGTTTTGTCGCTGGACAGAGACGATCGGCGCGCTTCGCTTCGCGGCTTCGGATCGTCGCCGGGGTTGCAGGTCACAGCGAGCAGGGCACGTCTTCGGTGGACGGATCGTTCGGCGGGCTTCGTCGCGGGACGGGCTTCGTCGCGGGAGATGCAGCGGTGGAGAAGATGAAGACCGGGCAGCTTTAGGGCTTCGGGCAGGAGATCCTATTTCGGGCAGCAACAATTTTCTTTCTCAAATTTACAATTTTTCTCACAAAAATTGTAAACCCTAA 4491 45.62 MNPNSSPSSSSNLSPDNNKPGLDAIRAIVVSINRYILEFLTNSKTRSLLKLKCASKLSSQKQEFFEFSDQSVLSNLYWGIENMEAAIQADTEEERESRLKNSEQMLQVPALLDEQKLTVGVPNSYLVCCSYFYLSMVKKLQRNELQVALHFLQSLMVAPKLIQEEFAPELCSSFLSSNWEEPRERFSDEKHVKAIRKMARTYKKWLMYYQVILYGESPIWHKKFRGSLSDELELQCPIYRSENSVSVHSRNRVYLSAETRDSSGDGQPSKSVYQCEKVHSLDPIKSMEDVMDEQSRSLYQDSNFKKGPKIISSMKSLQGMVKEVKSSSESESHEVEYVQENLDYAKHFMRNAYNSLPEIGDRNLQLPICTSGQKRKAKPFPRCLQKSIQEQDIKVQVTELFTSSINDYSIFSWDHIEEKTGIFSNCHVEDELTWRETKVNKFQLFGHAQATSLKNCMAKQMNHQKIGLRRVKSTHCQRNISEVYSFSEKKSKSELSGLVRRTISKLSFSEEMGKWDEDYAVEVSTVYQMLNSKTGVRYNKLKEVIINKLVRGISTSKEEKILRAAVSILVSIISSNGSVVEDIKKNGLRLCDLASALKKNVYEAAILIYLINPAPSEIKSLELLPTLVEVVCGSNDYQERPASLRLTPPTASLMIIEVLVTAFDDATNNKHLAALSSPSVLCGLLEFATIHNVEELISLATILVKCIQFDGECRKFMSEFTPVAPFIYLLKCNSDRAMFIALEFLHEVLRIPRSSAVSMLHRIRREGRNELTTMLMFCVKHLQPEYQLMAASLLIQLCTMDSSSNTGEYKEEAIQTLIRSVGSEECSNSQLLSASILSNLGGTFSWTGESYTVAWLVRKSGLSSITHQNMIKDVNWSDQILQDAGTDSWSSMIAGRFIEVGIPVFHALANGLKSKIKKVSRDCLAAAAWLGCEISRSPESTRCSACEILLGGFEQFLHPGLELDERLLACLCIYNYTSGKGMQNLIHFSEGVRESLRRLSNVTWMAEELHKVTDYFLPNNSRISCVHTQILEMGISSCGAVCSLIYYNGLLYSGYSDGSIKVWNISRQSSILVWDVKEHKRAVTCFTLSGTGDNLLSGSADKTIRVWRIGERQLECIEVITLKEPIQHIESCGHMIFTVTHRRGVKVFDTTREVKIICKNKQVKCIKAVQGKIYAGCMDSSIQEFSISNNREQEIKAPLKSWRILRDPINTIVVYKDWLFSANSTVQGSQLQVGLWIVQIIILSFQLTRGMVQEWRRHCKPQLSVATGKGETLQAMGVVEDFIYLISRSSKNIQIWLRRTQHKVGRISVGSRITSLLTGNDIILCGTDTVGGQQGSSRDLCRVGLRDSRRRRCSSDLIDGRRAVLRRTVRQLLSFDDGRRNTGDVSTTALRFGSVGFVDGAALRIGGFCRWTETIGALRFAASDRRRGCRSQRAGHVFGGRIVRRASSRDGLRRGRCSGGEDEDRAALGLRAGDPISGSNNFLSQIYNFSHKNCKP 1496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 875865 889033 + BLOR00069 Blo01g00069 54509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00069 1496 SMART WD40_4 1024 1064 IPR001680 GO:0005515
Blo01g00069 1496 SMART WD40_4 1069 1108 IPR001680 GO:0005515
Blo01g00069 1496 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 5 1329 - -
Blo01g00069 1496 Gene3D - 1019 1225 IPR015943 GO:0005515
Blo01g00069 1496 ProSiteProfiles Trp-Asp (WD) repeats profile. 1076 1109 IPR001680 GO:0005515
Blo01g00069 1496 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1076 1109 - -
Blo01g00069 1496 SUPERFAMILY WD40 repeat-like 1041 1327 IPR036322 GO:0005515
Blo01g00069 1496 Pfam WD domain, G-beta repeat 1076 1107 IPR001680 GO:0005515
Blo01g00069 1496 PANTHER OS04G0584500 PROTEIN 5 1329 - -
Blo01g00069 1496 ProSiteProfiles Trp-Asp (WD) repeats profile. 1050 1073 IPR001680 GO:0005515
Blo01g00069 1496 SUPERFAMILY ARM repeat 545 933 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00069 - - - qsu:112013161 1349.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00069 Blo-Chr1:875865 Blo08g00300 Blo-Chr8:4198067 8.84E-75 dispersed
Blo01g00069 Blo-Chr1:875865 Blo13g00565 Blo-Chr13:27718178 7.12E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g186 Blo01g00069 . . Bda08g00295 . . . Bma05g01030 . . . Cma14g01615 . Car14g01438 . . Cpe03g01357 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00830 . . . . . Cmo14g01653 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009269 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00069 Blo_Chr01 FPKM 22.206179 24.344025 9.258568 10.041302 5.775353 7.637078 8.365893 0.931411 0.727748 0.752128