Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00070 ATGGCAAATCGGCAGGCAACTTCAGATGTATCAGATAGAGGTCCTCAATCTTCAGGGCCACCAGATACTCTTGCTCTTCCTGGACCAGATGACACTATGAATGCGGAAAAGGGTGTAGTTCAAAATGCTTTGGCCGTTGGTCCAAGTATACAGCCAAAGACACAGAATAATGTTGGTCTTGCAGGCAGAAGCTCTGCGGTTGTTTCTGCATCTGGAGCATCTGAAAGATTATCCACATCTGCCATAATTGAAAGAATTCCTAGCAAGTGGCCTCGTCCAGTGTGGCATCCACCATGGAAGAACTATAGGGTTATAAGTGGCCACTTGGGATGGGTGAGATCCGTTGCATTTGATCCAAGTAACACATGGTTTTGTACTGGCTCTGCAGATAGAACCATCAAGTATCTAATCAACCATCAGTCTTCTTTTAAGTTTAAACATGTTTTTTGTTCTATTTCTTTCTCTCTTGAAAAAAGAAAGGCTATCCTAAAAAATTTTGAGCATCCATTAATTTCTCGTTGTTCTTCAATATGGGATGTTGCTAGTGGGAAGTTAAAACTCACCTTAACTGGACATATTGAGCAAATCCGAGGTCTTGCTGTCAGCAGCAAACACACTTACATGTTTTCCGCTGGAGATGATAAACAAGTGAAATGCTGGGATCTTGAGCAGAATAAGGTCATCCGTTCATATCATGGTCATTTAAGTGGTGTTTATTGCTTGGCCCTTCATCCTACTATTGATATTTTACTAACCGGGGGAAGAGATTCTGTCTGTCGGGTCTGGGATATTCGTAGTAAAATGCAAATACATGCACTTTCTGGGCATGATAACACAGTCTGCTCAGTTTTTACTCGACCTACGGATCCACAAGTTGTGACTGGCTCCCACGACTCTACAATTAAGTTTTGGGACCTTAGACATGGGAAAACTCTGTCAACTCTGACACACCACAAGAAATCTGTGCGAGCAATGGCGCTTCATCCAAAAGAAAATTGTTTTGCATCTGCATCAGCTGACAATATCAAAAAATTCAACCTTCCAAATGGGGAATTTTTACACAATATGCTCTCTCAGCAGAAGACTATCATCAATACTATGGCTGTGAACGAGGAAGGTGTGATGGCAACTGGAGGTGACAATGGTAGCTTATGGTTCTGGGACTGGAAAAGTGGCCACAATTTTCAGCAATCACAAACACTTGTGCAGCCAGGCTCACTGGATAGTGAAGCGGGCATATACGCAGCCGCGTACGACTTGACGGGATCGAGGCTTATAACCTGTGAAGCTGACAAGACAATTAAAATGTGGAAGGAAGATGAGAATGCCACCCCAGAAACTCATCCCCTCAATTTCAAGCCCCCTAAAGATATCAGAAGATTCTAG 1386 42.93 MANRQATSDVSDRGPQSSGPPDTLALPGPDDTMNAEKGVVQNALAVGPSIQPKTQNNVGLAGRSSAVVSASGASERLSTSAIIERIPSKWPRPVWHPPWKNYRVISGHLGWVRSVAFDPSNTWFCTGSADRTIKYLINHQSSFKFKHVFCSISFSLEKRKAILKNFEHPLISRCSSIWDVASGKLKLTLTGHIEQIRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRHGKTLSTLTHHKKSVRAMALHPKENCFASASADNIKKFNLPNGEFLHNMLSQQKTIINTMAVNEEGVMATGGDNGSLWFWDWKSGHNFQQSQTLVQPGSLDSEAGIYAAAYDLTGSRLITCEADKTIKMWKEDENATPETHPLNFKPPKDIRRF 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 890912 897102 + BLOR00070 Blo01g00070 54510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00070 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 105 134 IPR001680 GO:0005515
Blo01g00070 461 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Blo01g00070 461 PRINTS G protein beta WD-40 repeat signature 250 264 IPR020472 -
Blo01g00070 461 PRINTS G protein beta WD-40 repeat signature 292 306 IPR020472 -
Blo01g00070 461 ProSitePatterns Trp-Asp (WD) repeats signature. 292 306 IPR019775 -
Blo01g00070 461 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 231 266 - -
Blo01g00070 461 Pfam WD domain, G-beta repeat 226 263 IPR001680 GO:0005515
Blo01g00070 461 Pfam WD domain, G-beta repeat 184 221 IPR001680 GO:0005515
Blo01g00070 461 Pfam WD domain, G-beta repeat 270 305 IPR001680 GO:0005515
Blo01g00070 461 Pfam WD domain, G-beta repeat 100 134 IPR001680 GO:0005515
Blo01g00070 461 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 307 - -
Blo01g00070 461 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 33 135 IPR045241 GO:0000398
Blo01g00070 461 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 173 461 IPR045241 GO:0000398
Blo01g00070 461 SMART WD40_4 98 137 IPR001680 GO:0005515
Blo01g00070 461 SMART WD40_4 182 221 IPR001680 GO:0005515
Blo01g00070 461 SMART WD40_4 224 263 IPR001680 GO:0005515
Blo01g00070 461 SMART WD40_4 266 305 IPR001680 GO:0005515
Blo01g00070 461 SMART WD40_4 349 388 IPR001680 GO:0005515
Blo01g00070 461 SMART WD40_4 308 346 IPR001680 GO:0005515
Blo01g00070 461 SMART WD40_4 400 438 IPR001680 GO:0005515
Blo01g00070 461 MobiDBLite consensus disorder prediction 1 18 - -
Blo01g00070 461 MobiDBLite consensus disorder prediction 442 461 - -
Blo01g00070 461 CDD WD40 101 438 - -
Blo01g00070 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 314 IPR001680 GO:0005515
Blo01g00070 461 Gene3D - 172 461 IPR015943 GO:0005515
Blo01g00070 461 Gene3D - 86 142 IPR015943 GO:0005515
Blo01g00070 461 SUPERFAMILY WD40 repeat-like 95 440 IPR036322 GO:0005515
Blo01g00070 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Blo01g00070 461 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Blo01g00070 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 272 IPR001680 GO:0005515
Blo01g00070 461 PANTHER BNAA01G27690D PROTEIN 33 135 - -
Blo01g00070 461 PANTHER BNAA01G27690D PROTEIN 173 461 - -
Blo01g00070 461 ProSitePatterns Trp-Asp (WD) repeats signature. 250 264 IPR019775 -
Blo01g00070 461 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00070 K12862 PLRG1, PRL1, PRP46; pleiotropic regulator 1 - csv:101221493 734.947
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00070 Blo-Chr1:890912 Blo01g00833 Blo-Chr1:13514396 2.29E-07 dispersed
Blo11g00694 Blo-Chr11:8120046 Blo01g00070 Blo-Chr1:890912 3.64E-07 dispersed
Blo01g00070 Blo-Chr1:890912 Blo13g00615 Blo-Chr13:28573069 1.38E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g184 Blo01g00070 . . Bda08g00378 . . . Bma05g01031 . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0763 . . . . . . . . . . Bpe05g00831 . . . . . . . . . Car17g00306 . . . . . . . . . . . . . . . . Lsi09g01434 . . Cme11g02020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008619 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1 1 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00070 Blo_Chr01 FPKM 2.161867 2.609151 12.398078 11.427938 14.347505 14.043429 15.295456 0.0918 0.0 0.079267