Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00071 ATGTCGCGGAAAGGTTTAATGGAGCAAGATTTAAGTAAACTGGATGTAACAAAGTTGAGTCCAACATCCAAGGAAGTTATATCCCGTCAAGCCACCATTAACATTGGCACCATTGGTCATGTGGCACATGGAAAGTCAACAGTTGTAAAAGCAATATCTGGTGTTCAGACTGTTCGTTTTAAAAATGAACTAGAGCGTAACATCACCATCAAGCTTGGATATGCAAATGCAAAGATATACAAATGCGAAGATGACCGATGCCCTCGACCTTTGGCATACAAGGCATATGGAAGTGGAAAGGAAGACAATCCTTTATGCGATGTGCCTGGTTTTGAAAATTGCAGGATGGAACTTCTAAGACATGTGTCTTTTGTAGATTGTCCTGGTCATGATATTCTCATGGCTACCATGCTTAATGGAGCAGCAATTATGGATGGAGCACTTCTTTTAATAGCTGCAAATGAAAGCTGTCCCCAACCTCAAACTTCAGAGCACCTGGCTGCTGTTGAAATTATGCGCCTCCAACATATTATAATCCTTCAAAACAAAGTCGATCTCATTCAAGAAAATGTAGCCATCAATCAGCATGAAGCAATTAAGAAATTTATTAAAGGGACTGTAGCTGATAATGCTCCTATTGTTCCAATTTCGGCCCAGCTAAAGTATAACATCGATGTTGTTTGTGAATATATAGTGAAGAATATTCCCATTCCGGAGCGGAACTTTGTGTCACCTCCAAACATGATTGTAATTCGATCATTTGATGTCAACAAGCCTGGATACGAAGTTGATGAAATCAAAGGTGGTGTAGCCGGCGGAAGTATCCTTAGGGGTGTTTTGAAGGTGAACCAATATATTGAGGTTCGTCCTGGTATTGTTGTTAAGGATGAAAGTGGGAACATCAAATGCACACCAATATATTCAAGAATTGTTTCTTTGTATGCGGAGCAAAATGAACTTCAATTTGCTGTGCCTGGTGGCCTCATCGGAGTTGGTACAACCATGGATCCCACTTTGACGCGTGCTGATAGATTGGTCGGCCAGGTTCTTGGTGAAGTTGGGTCGCTCCCTGAGGTTTTCGTTGAGCTCGAGGTTAATTTCTTCCTACTTCGACGACTTCTGGGTGTGAGAACAAAGGGCTCGGAAAGGCAAGGTAAGGTTTCAAAACTAGCCAAGGGGGAGATCCTAATGTTGAACATTGGATCTATGTCCACTGGGGCCCGCGTCCTTGCAGTGAGGAATGATCTGGCAAAGTTACAACTCACTTCTCCGGTGTGTACGAGCAAAGGGGAAAAAATAGCTTTGAGTCGCCGAGTTGAGAAGCACTGGCGTCTTATTGGCTGGGGCCAGATTCAAGCAGTGGCAGCAATAGTTGCTGCTCCTATGGCCGAAGCTCAACAAGGGATTATTGGTGGCCTCCTTGGTCGTATTCGTATTCAGGGACAGCTGTTTTGCACTATCAATGGCACCATGGGTGTTAATGGCACTGCCACCCCTTTTTTCCCAAATGCACTGGTGAGGCTGCAATGTGATGAAGGGAATGTGGTTTCAACAACAACAACAAATGGATCTGGAATATTTTCTATTATTTTGAATCCTGTCGAATTTCTTCTCTCTTTCCTGTTAAGCAATTGCAGCTTAGCTGTATCCACTCCACTGTCCTCTTGCAATGCCGATTTACCATCTGCTGGAGGTCTTCTTTCATCCCTGCAATTCATTGGAAATACATTTCTTGGCTTCCTTACTAACATGGCCAACATCATTCCTACCGGATTCCAGTACCTGCCCAACCTTTAG 1797 43.46 MSRKGLMEQDLSKLDVTKLSPTSKEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPLAYKAYGSGKEDNPLCDVPGFENCRMELLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIKKFIKGTVADNAPIVPISAQLKYNIDVVCEYIVKNIPIPERNFVSPPNMIVIRSFDVNKPGYEVDEIKGGVAGGSILRGVLKVNQYIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEILMLNIGSMSTGARVLAVRNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAVAAIVAAPMAEAQQGIIGGLLGRIRIQGQLFCTINGTMGVNGTATPFFPNALVRLQCDEGNVVSTTTTNGSGIFSIILNPVEFLLSFLLSNCSLAVSTPLSSCNADLPSAGGLLSSLQFIGNTFLGFLTNMANIIPTGFQYLPNL 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 901271 907281 + BLOR00071 Blo01g00071 54511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00071 598 CDD eIF2_gamma_II 241 354 IPR044127 GO:0000049
Blo01g00071 598 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 355 452 IPR009001 -
Blo01g00071 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 242 IPR027417 -
Blo01g00071 598 Pfam Elongation factor Tu domain 2 268 350 IPR004161 GO:0005525
Blo01g00071 598 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 1 460 - -
Blo01g00071 598 Gene3D Translation factors 357 457 - -
Blo01g00071 598 Gene3D - 30 240 IPR027417 -
Blo01g00071 598 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Blo01g00071 598 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Blo01g00071 598 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Blo01g00071 598 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Blo01g00071 598 Pfam Elongation factor Tu GTP binding domain 32 236 IPR000795 GO:0003924|GO:0005525
Blo01g00071 598 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 460 - -
Blo01g00071 598 CDD eIF2_gamma 33 240 IPR044128 GO:0005525
Blo01g00071 598 SUPERFAMILY Translation proteins 240 354 IPR009000 -
Blo01g00071 598 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 239 IPR000795 GO:0003924|GO:0005525
Blo01g00071 598 CDD eIF2_gamma_III 357 449 IPR015256 -
Blo01g00071 598 Pfam Initiation factor eIF2 gamma, C terminal 362 451 IPR015256 -
Blo01g00071 598 Gene3D Translation factors 242 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00071 Blo-Chr1:901271 Blo12g00011 Blo-Chr12:926815 0 dispersed
Blo01g00071 Blo-Chr1:901271 Blo16g00232 Blo-Chr16:5205311 2.65E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00071 K03242 - csin:114306300 860.522