Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00072 ATGTGGTTGTTCTACTTTCCCATGTCATGCCTGCTGGCCAACATTTGGGTTGTTGCTTTAGACTATCTGAGTAAAGTCTATGAGTCGGCTTGCATAGTGAGGTCAGGTCCGTGTCCAGCTGATGAGCTTCTCTCGGACTCGTTTCCTTACAAAGAAATCGAGAATGGAATCCTATGGGAAGTTGAGGGAAAGTGGGTTGTTCAAGGAGCAATTGATGTGGATATTGGTGCAAACCCTTCTGCCGAAGGTGGTGGGGAGGACGAGGGTGTGGATGATCAAGCTGTGAAGGTGGTTGACATTGTTGACACTTTCAGGCTCCAGGAACAACCTGCTTTCGCTAAGAAGCAGTTTGTCACATTCATGAAGAGGTACATCAAGTTGTTGACCCCTAAGCTAGAGGGAGAGGACCAAGAGAAATTTAAGAAACACATTGAGGGTGCAACAAAATTCCTGCTGTCAAAGCTCAGTGACCTTCAATTCTTTGTGGGAGAGAGCATGCATGATGATGGAAGTTTGGTCTTTGCTTACTACAAGGATGGAGCAACTGATCCAACATTTCTTTACTTTGCCCATGGATTGAAGGAAATCAAGTGCTAG 597 45.56 MWLFYFPMSCLLANIWVVALDYLSKVYESACIVRSGPCPADELLSDSFPYKEIENGILWEVEGKWVVQGAIDVDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFAKKQFVTFMKRYIKLLTPKLEGEDQEKFKKHIEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYKDGATDPTFLYFAHGLKEIKC 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 913210 916076 + BLOR00072 Blo01g00072 54512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00072 198 Pfam Translationally controlled tumour protein 40 194 IPR018105 -
Blo01g00072 198 ProSiteProfiles Translationally controlled tumor protein (TCTP) domain profile. 31 198 IPR034737 -
Blo01g00072 198 ProSitePatterns Translationally controlled tumor protein (TCTP) domain signature 1. 75 85 IPR018103 -
Blo01g00072 198 Gene3D Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 38 198 IPR011323 -
Blo01g00072 198 PANTHER TRANSLATIONALLY-CONTROLLED TUMOR PROTEIN HOMOLOG 40 198 - -
Blo01g00072 198 PANTHER TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED 40 198 IPR018105 -
Blo01g00072 198 ProSitePatterns Translationally controlled tumor protein (TCTP) domain signature 2. 155 177 IPR018103 -
Blo01g00072 198 SUPERFAMILY Mss4-like 40 198 IPR011057 -
Blo01g00072 198 PRINTS Translationally controlled tumour protein signature 31 51 IPR018105 -
Blo01g00072 198 PRINTS Translationally controlled tumour protein signature 90 109 IPR018105 -
Blo01g00072 198 PRINTS Translationally controlled tumour protein signature 76 87 IPR018105 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00072 - - - vri:117930423 299.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00072 Blo-Chr1:913210 Blo02g00503 Blo-Chr2:7943455 2.75E-107 wgd
Blo01g00072 Blo-Chr1:913210 Blo07g00170 Blo-Chr7:2178892 6.78E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g143 Blo01g00072 . . Bda08g00300 . . . Bma05g01024 Cmo08g01217 Cmo17g00333 . . . . . . . . . . . . . . Cla06g00458 Cam06g0488 Cec06g0492 Cco06g0491 Clacu06g0475 Cmu06g0476 Cre06g1249 Cone14ag0747 . . . . Csa06g01777 Chy11g01535 . . . . . Bpe05g00825 . . . Sed09g0264 . . Cma08g01245 Cma17g00346 Car08g01119 Car17g00315 Cpe12g00294 Cpe17g00040 Bhi12g02031 Tan06g2709 Cmetu11g1217 Lac11g0888 . . Lcy12g0767 . . . . . . . Lsi09g01456 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001678 4 2 2 4 3 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 1 2 4 2 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00072 Blo_Chr01 FPKM 11.17837 12.63259 12.312641 11.962193 12.598556 11.91245 14.286223 13.227328 13.347188 13.585084