Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00086 ATGGATCGGTACGGTCGGATTACCGAAGGGTCACCGTCCGATCCGTCGCCGGAATGGACAGCTCCGGTGACACAAACGGAGCTCGAGGGTGAGTTGATTTCTCCTGCATTTTGGTTTCATTCAGATTTCTGTGTCGAGTCCTACCCTGAGCGGCCGCTCGAGGCTGACTGTATCTACTTTTTGCGAACCGGGTTTTGTGGTTATGGTTCCCGTTGCCGATTTAATCATCCTCGCGGACATAGTGCGGTTGGGGGATCTGCAAGGCCTGGTGGAGTAGAGTACCCAGAGAGAATAGGCCAGCCTCTATGCCAGTATTTTATGAAGACTGGGATGTGTAAATTTGGTGCTACTTGCAAGTATCACCATCCAAAACAGGGAGGGGGTCCTGCCATTGCCGCATCGTTGAATTATTACGGATACCCATTACGACCGGGTGAAAAAGAGTGTTCTTATTACGTCAAAACTGGCCAATGTAAATTTGGTGGGACGTGTAAATTCCATCATCCACAGCCAGTTAGTGTTCCACTTCCAACGCAATCTCAGGCTCAGAGCATTCCTCAAATTCCCTCGCTCAATGTGTATCCTTCTGTACAATCTCCATCTGTTCCTTCATCTCAACAGTATGGGGTAGTAGTTGCAAGGCCACCTTTTCTGCCAAGTTCATACATTCATAGTGCCTATGGTCCTTGGCTTCTCTCCCAGGGGATGGTTCCTTTTCCAAGTTGGGGTCCTTATCTGGCTCCACTAAACCCAGTACCGTCTCCCAGCACTCAACCTTCTGTTGGTTCGGGATCACTTTATGGATTAACACAACTTTCTCCTTCTGCCCCTGCATATACTGGATCATATCACACCATACCATCTGCTGGACCCTCAAGTAGTATCCAAAAGGAAGTGTTTCCAGAGAGACCAGGCCAACCAGAATGCCCGTATTACATGAGAACAGGGGATTGCAAATTTGGATCTTCATGTAAATATCATCACCCTTCAGAATTGATTGCTCCAAGACCAAATGTTCTTCTTAGCCCAATGGGTCTTCCTCTTCGGCCGGGCGCCCCTCAGTGTGCCCACTTTGCACAACATGGCGTATGCAGGTTTGGCTCTGCATGCAAATTTGACCACTCATCAAGAACCCTAAGTTACAGCCCCTCTGCATCCTCTCTCGTTGACATGCCTGTCGCGCCTTACCCAGTGGGATCCACGATTGGTACTTTAGCTCCATCTTCATCATCTTCAGATTTACGGCCTGAAATTTTGTCAGGATCAACCAATCAAGTAATGCTGCTTCAAGAAAAGGACCCTTTTGTTCCTGCAAGTGTCAGACAGCAAGCCAATCCTGAGGTGGCTAACGCCAGCCCGCCTGCTCAGCTCGTTACTGTAGCGGCCGAGTCAAGCTCGGCTCGCTACAGTAACCAAGCGGGCTCGGCCCGGGCCCAGTAG 1440 49.72 MDRYGRITEGSPSDPSPEWTAPVTQTELEGELISPAFWFHSDFCVESYPERPLEADCIYFLRTGFCGYGSRCRFNHPRGHSAVGGSARPGGVEYPERIGQPLCQYFMKTGMCKFGATCKYHHPKQGGGPAIAASLNYYGYPLRPGEKECSYYVKTGQCKFGGTCKFHHPQPVSVPLPTQSQAQSIPQIPSLNVYPSVQSPSVPSSQQYGVVVARPPFLPSSYIHSAYGPWLLSQGMVPFPSWGPYLAPLNPVPSPSTQPSVGSGSLYGLTQLSPSAPAYTGSYHTIPSAGPSSSIQKEVFPERPGQPECPYYMRTGDCKFGSSCKYHHPSELIAPRPNVLLSPMGLPLRPGAPQCAHFAQHGVCRFGSACKFDHSSRTLSYSPSASSLVDMPVAPYPVGSTIGTLAPSSSSSDLRPEILSGSTNQVMLLQEKDPFVPASVRQQANPEVANASPPAQLVTVAAESSSARYSNQAGSARAQ 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1154513 1162306 - BLOR00086 Blo01g00086 54526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00086 479 ProSiteProfiles Zinc finger C3H1-type profile. 97 125 IPR000571 GO:0046872
Blo01g00086 479 SUPERFAMILY CCCH zinc finger 145 170 IPR036855 GO:0046872
Blo01g00086 479 Gene3D - 301 387 - -
Blo01g00086 479 Gene3D - 50 126 - -
Blo01g00086 479 MobiDBLite consensus disorder prediction 443 479 - -
Blo01g00086 479 Gene3D - 129 179 - -
Blo01g00086 479 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Blo01g00086 479 SUPERFAMILY CCCH zinc finger 56 79 IPR036855 GO:0046872
Blo01g00086 479 SUPERFAMILY CCCH zinc finger 353 379 IPR036855 GO:0046872
Blo01g00086 479 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872
Blo01g00086 479 ProSiteProfiles Zinc finger C3H1-type profile. 51 79 IPR000571 GO:0046872
Blo01g00086 479 SUPERFAMILY CCCH zinc finger 307 331 IPR036855 GO:0046872
Blo01g00086 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 145 170 IPR000571 GO:0046872
Blo01g00086 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 78 IPR000571 GO:0046872
Blo01g00086 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 375 IPR000571 GO:0046872
Blo01g00086 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 329 IPR000571 GO:0046872
Blo01g00086 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 124 IPR000571 GO:0046872
Blo01g00086 479 MobiDBLite consensus disorder prediction 1 21 - -
Blo01g00086 479 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Blo01g00086 479 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 14 425 - -
Blo01g00086 479 MobiDBLite consensus disorder prediction 437 479 - -
Blo01g00086 479 SUPERFAMILY CCCH zinc finger 98 124 IPR036855 GO:0046872
Blo01g00086 479 SMART c3hfinal6 51 78 IPR000571 GO:0046872
Blo01g00086 479 SMART c3hfinal6 349 376 IPR000571 GO:0046872
Blo01g00086 479 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Blo01g00086 479 SMART c3hfinal6 303 330 IPR000571 GO:0046872
Blo01g00086 479 SMART c3hfinal6 97 124 IPR000571 GO:0046872
Blo01g00086 479 PANTHER PROTEIN PHOSPHATASE RELATED 14 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00086 Blo-Chr1:1154513 Blo10g00044 Blo-Chr10:418056 1.22E-148 dispersed
Blo12g00022 Blo-Chr12:1544529 Blo01g00086 Blo-Chr1:1154513 6.33E-18 transposed
Blo01g00086 Blo-Chr1:1154513 Blo07g00181 Blo-Chr7:2281253 2.53E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11800 PF00642 zf-CCCH 1.90E-06 CL0537 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00086 - - vvi:100257896 623.239