Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00087 ATGTCTCTGAAGAGTATAATTCAGGACATGAGGTCTCGATCGCATCGGGTGGTCCAGGATGGCTTACCAACCGCGGTGAAAGATGGTTTGGAGCAGAGCTGTTGGGCTTACATGCCTCAGGAGCTACTGCGGGAGGTTCTTATGCGAATCGAGGCATCTGAGGGTGATTGGCCCCCGAGGAAGAGCGTTGTTGCTTGTGCTGGAGTGTGCCGGAGTTGGAGAGTTATTACTAAGGAGATCGTCAAAACTCCTGAAACCTCCGGAAAGTTGACCTTTCCGATCTCTATAAAGCAGCCTGGTTCAAGGGAGTCTCTTCTTCAGTGTTTCATAAAACGAAACAGATCCACACAAACTTATTGCCTTTTTCTCAGTTTAACTAGCGCCCTCACTGATGATGGGAAGTTCCTTCTTGCTGCAAGAAAATGTAGACGACCAACATGTACAGATTATATCATCTCTATTCGGGCTGATGATATGTCAAAGGGAAGCAGCACCTATGTCGGGAAATTAACGTCCAACTTTCTCGGAACCAAGTTCACAATATTTGATGGGCAGCCGCCCCATGCAAGTGCCAAGATCACAAAAAGTCGATCCACCAGGCTTGTAAATTTGAAACAAGTTTCACCCAAAATTCCTATAGGGAACTTCCCAGTTGCTCGAATCTCATATGAATTGAACGTACTGGGTCCAAGGAGAATGCAGTGCATCATGGACGCAATTCCTGCCTCCTCAATTGAACCTGGCGGAGTGGCACCCACACAAACTGAGGCTTCACGTAGCCACATTGAATTTTCTCCATCATTCCCATTTTTCCGGTCAAAGTCAATCAACTTGGATAACTCCGTGACTGGACCTTTGGCCTGTCAGAAAGATGGAATGCTGGTTCTGAGAAACAAGAGTCCCAGGTGGCACGAACAATTACAATGCTGGTGTTTGAACTTCCATGGGCGAGTGACCATTGCTTCAGTGAAAAATTTTCAGTTAGTTGCTTCTCCAGAAAACGGACCTGCAGGACCAGAACATGAGAAAATAATCCTCCAATTTGGAAAAATAGGAAAGGATTTATTTACAATGGATTATCGGTACCCAGTCTCAGCATTCCAGGCATTTGCAATCTGTCTTAGCAGCTTTGACACCAAGATCGCTTGTGAATGA 1155 45.8 MSLKSIIQDMRSRSHRVVQDGLPTAVKDGLEQSCWAYMPQELLREVLMRIEASEGDWPPRKSVVACAGVCRSWRVITKEIVKTPETSGKLTFPISIKQPGSRESLLQCFIKRNRSTQTYCLFLSLTSALTDDGKFLLAARKCRRPTCTDYIISIRADDMSKGSSTYVGKLTSNFLGTKFTIFDGQPPHASAKITKSRSTRLVNLKQVSPKIPIGNFPVARISYELNVLGPRRMQCIMDAIPASSIEPGGVAPTQTEASRSHIEFSPSFPFFRSKSINLDNSVTGPLACQKDGMLVLRNKSPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHEKIILQFGKIGKDLFTMDYRYPVSAFQAFAICLSSFDTKIACE 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1170475 1173136 - BLOR00087 Blo01g00087 54527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00087 384 SUPERFAMILY F-box domain 27 78 IPR036047 GO:0005515
Blo01g00087 384 Pfam F-box domain 38 82 IPR001810 GO:0005515
Blo01g00087 384 SUPERFAMILY Tubby C-terminal domain-like 84 384 IPR025659 -
Blo01g00087 384 PRINTS Tubby superfamily signature 314 330 IPR000007 -
Blo01g00087 384 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Blo01g00087 384 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Blo01g00087 384 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Blo01g00087 384 PRINTS Tubby superfamily signature 362 384 IPR000007 -
Blo01g00087 384 PRINTS Tubby superfamily signature 341 360 IPR000007 -
Blo01g00087 384 PRINTS Tubby superfamily signature 296 313 IPR000007 -
Blo01g00087 384 ProSitePatterns Tub family signature 1. 314 327 IPR018066 -
Blo01g00087 384 ProSitePatterns Tub family signature 2. 369 384 IPR018066 -
Blo01g00087 384 PANTHER TUBBY-RELATED 1 384 - -
Blo01g00087 384 Gene3D Tubby Protein; Chain A 93 384 IPR025659 -
Blo01g00087 384 Pfam Tub family 97 379 IPR000007 -
Blo01g00087 384 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 384 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00087 K19600 TUB, TULP; tubby and related proteins - zju:107426905 641.728
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00087 Blo-Chr1:1170475 Blo01g01728 Blo-Chr1:57017987 9.45E-147 dispersed
Blo06g00639 Blo-Chr6:29392581 Blo01g00087 Blo-Chr1:1170475 2.49E-12 dispersed
Blo01g00087 Blo-Chr1:1170475 Blo12g00786 Blo-Chr12:26257209 1.04E-149 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo15g00775 . 1 445 TUB Transcription Factor Family AT1G76900 67.4 4.2e-167 584.7
Blo02g00865 . 1 422 TUB Transcription Factor Family AT1G76900 69.5 4.2e-167 584.7
Blo01g01728 BCT 1 424 TUB Transcription Factor Family AT1G76900 68.6 4.2e-167 584.7
Blo12g00786 BCT 1 427 TUB Transcription Factor Family AT1G76900 68.1 4.7e-166 581.3
Blo13g00300 . 12 437 TUB Transcription Factor Family AT1G76900 66.6 2.9e-160 562.0
Blo12g00905 BCT 1 410 TUB Transcription Factor Family AT1G76900 50.5 8.4e-115 411.0
Blo02g00865 . 169 422 TUB Transcription Factor Family AT1G25280 73.8 1.2e-100 363.2
Blo15g00775 . 192 445 TUB Transcription Factor Family AT1G25280 73.0 2.9e-99 358.6
Blo12g00786 BCT 173 427 TUB Transcription Factor Family AT1G25280 66.1 3.7e-94 341.7
Blo01g01728 BCT 173 424 TUB Transcription Factor Family AT1G25280 67.7 6.9e-93 337.4
Blo13g00300 . 187 437 TUB Transcription Factor Family AT1G25280 67.8 9.3e-90 327.0
Blo01g01567 BCT 176 412 TUB Transcription Factor Family AT1G25280 53.6 2.4e-69 259.2
Blo01g00087 . 156 384 TUB Transcription Factor Family AT1G25280 53.2 1.2e-68 256.9
Blo16g00048 . 189 440 TUB Transcription Factor Family AT1G25280 51.2 9.4e-66 247.3
Blo12g00905 BCT 174 410 TUB Transcription Factor Family AT1G25280 52.6 1.2e-65 246.9
Blo01g00087 . 98 384 TUB Transcription Factor Family AT5G18680 61.3 1.8e-94 342.8
Blo02g00865 . 112 422 TUB Transcription Factor Family AT5G18680 54.0 2.1e-82 302.8
Blo01g01728 BCT 112 424 TUB Transcription Factor Family AT5G18680 51.7 6.1e-82 301.2
Blo13g00300 . 123 437 TUB Transcription Factor Family AT5G18680 50.3 5.7e-80 294.7
Blo01g01567 BCT 113 412 TUB Transcription Factor Family AT5G18680 50.3 2.0e-77 286.2
Blo16g00048 . 1 440 TUB Transcription Factor Family AT2G18280 58.6 8.2e-135 477.2
Blo12g00905 BCT 1 410 TUB Transcription Factor Family AT2G18280 55.0 1.4e-121 433.3
Blo01g01567 BCT 1 412 TUB Transcription Factor Family AT2G18280 56.1 2.6e-120 429.1
Blo12g00786 BCT 1 427 TUB Transcription Factor Family AT2G18280 53.0 1.2e-117 420.2
Blo01g01728 BCT 1 424 TUB Transcription Factor Family AT2G18280 52.9 2.0e-117 419.5
Blo02g00865 . 1 422 TUB Transcription Factor Family AT2G18280 52.2 3.8e-116 415.2
Blo01g00087 . 1 384 TUB Transcription Factor Family AT2G18280 53.8 2.0e-112 402.9
Blo13g00300 . 12 437 TUB Transcription Factor Family AT2G18280 50.3 7.5e-112 401.0
Blo01g00087 . 1 384 TUB Transcription Factor Family AT2G47900 67.2 7.1e-158 553.9
Blo12g00786 BCT 1 427 TUB Transcription Factor Family AT2G47900 57.0 5.5e-134 474.6
Blo02g00865 . 1 422 TUB Transcription Factor Family AT2G47900 56.2 2.3e-132 469.2
Blo01g01728 BCT 1 424 TUB Transcription Factor Family AT2G47900 56.2 2.6e-131 465.7
Blo15g00775 . 1 445 TUB Transcription Factor Family AT2G47900 53.8 8.2e-130 460.7
Blo13g00300 . 12 437 TUB Transcription Factor Family AT2G47900 56.6 1.1e-129 460.3
Blo01g01567 BCT 1 412 TUB Transcription Factor Family AT2G47900 55.1 5.3e-121 431.4
Blo16g00048 . 1 440 TUB Transcription Factor Family AT2G47900 52.4 6.1e-117 417.9
Blo12g00905 BCT 1 410 TUB Transcription Factor Family AT2G47900 52.9 1.7e-114 409.8
Blo10g00732 . 48 377 TUB Transcription Factor Family AT2G47900 50.8 1.5e-99 360.1
Blo06g00639 . 80 305 TUB Transcription Factor Family AT1G16070 59.1 3.6e-71 265.4
Blo01g01728 BCT 65 424 TUB Transcription Factor Family AT1G43640 69.1 3.0e-147 518.5
Blo12g00786 BCT 65 427 TUB Transcription Factor Family AT1G43640 66.4 2.0e-143 505.8
Blo02g00865 . 65 422 TUB Transcription Factor Family AT1G43640 67.4 5.8e-143 504.2
Blo15g00775 . 64 445 TUB Transcription Factor Family AT1G43640 64.2 1.4e-141 499.6
Blo13g00300 . 76 437 TUB Transcription Factor Family AT1G43640 63.7 2.6e-135 478.8
Blo01g00087 . 47 384 TUB Transcription Factor Family AT1G43640 51.9 1.7e-102 369.8
Blo12g00905 BCT 64 410 TUB Transcription Factor Family AT1G43640 50.4 2.0e-98 356.3
Blo01g01567 BCT 31 412 TUB Transcription Factor Family AT1G47270 61.8 4.9e-132 468.0
Blo12g00905 BCT 31 410 TUB Transcription Factor Family AT1G47270 63.3 4.2e-131 464.9
Blo16g00048 . 1 440 TUB Transcription Factor Family AT1G47270 54.5 3.2e-123 438.7
Blo01g01728 BCT 48 424 TUB Transcription Factor Family AT1G47270 56.7 1.4e-115 413.3
Blo12g00786 BCT 31 427 TUB Transcription Factor Family AT1G47270 52.2 2.8e-111 399.1
Blo02g00865 . 48 422 TUB Transcription Factor Family AT1G47270 54.3 5.3e-110 394.8
Blo13g00300 . 42 437 TUB Transcription Factor Family AT1G47270 51.4 2.1e-106 382.9
Blo10g00732 . 1 377 TUB Transcription Factor Family AT1G53320 68.1 5.8e-146 514.2
Blo01g00087 . 98 384 TUB Transcription Factor Family AT3G06380 61.1 2.8e-92 335.5
Blo02g00865 . 116 422 TUB Transcription Factor Family AT3G06380 52.9 1.0e-81 300.4
Blo01g01728 BCT 116 424 TUB Transcription Factor Family AT3G06380 51.9 2.7e-79 292.4
Blo01g01567 BCT 117 412 TUB Transcription Factor Family AT3G06380 51.3 1.8e-78 289.7
Blo12g00905 BCT 115 410 TUB Transcription Factor Family AT3G06380 52.2 2.8e-76 282.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002294 1 2 1 1 2 2 3 2 2 2 2 2 4 1 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11801 PF01167 Tub 3.00E-104 CL0395 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00087 Blo_Chr01 FPKM 32.726822 32.008266 17.635607 19.65893 5.631947 7.607919 7.052812 18.781706 18.291805 17.056202