Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00087 ATGTCTCTGAAGAGTATAATTCAGGACATGAGGTCTCGATCGCATCGGGTGGTCCAGGATGGCTTACCAACCGCGGTGAAAGATGGTTTGGAGCAGAGCTGTTGGGCTTACATGCCTCAGGAGCTACTGCGGGAGGTTCTTATGCGAATCGAGGCATCTGAGGGTGATTGGCCCCCGAGGAAGAGCGTTGTTGCTTGTGCTGGAGTGTGCCGGAGTTGGAGAGTTATTACTAAGGAGATCGTCAAAACTCCTGAAACCTCCGGAAAGTTGACCTTTCCGATCTCTATAAAGCAGCCTGGTTCAAGGGAGTCTCTTCTTCAGTGTTTCATAAAACGAAACAGATCCACACAAACTTATTGCCTTTTTCTCAGTTTAACTAGCGCCCTCACTGATGATGGGAAGTTCCTTCTTGCTGCAAGAAAATGTAGACGACCAACATGTACAGATTATATCATCTCTATTCGGGCTGATGATATGTCAAAGGGAAGCAGCACCTATGTCGGGAAATTAACGTCCAACTTTCTCGGAACCAAGTTCACAATATTTGATGGGCAGCCGCCCCATGCAAGTGCCAAGATCACAAAAAGTCGATCCACCAGGCTTGTAAATTTGAAACAAGTTTCACCCAAAATTCCTATAGGGAACTTCCCAGTTGCTCGAATCTCATATGAATTGAACGTACTGGGTCCAAGGAGAATGCAGTGCATCATGGACGCAATTCCTGCCTCCTCAATTGAACCTGGCGGAGTGGCACCCACACAAACTGAGGCTTCACGTAGCCACATTGAATTTTCTCCATCATTCCCATTTTTCCGGTCAAAGTCAATCAACTTGGATAACTCCGTGACTGGACCTTTGGCCTGTCAGAAAGATGGAATGCTGGTTCTGAGAAACAAGAGTCCCAGGTGGCACGAACAATTACAATGCTGGTGTTTGAACTTCCATGGGCGAGTGACCATTGCTTCAGTGAAAAATTTTCAGTTAGTTGCTTCTCCAGAAAACGGACCTGCAGGACCAGAACATGAGAAAATAATCCTCCAATTTGGAAAAATAGGAAAGGATTTATTTACAATGGATTATCGGTACCCAGTCTCAGCATTCCAGGCATTTGCAATCTGTCTTAGCAGCTTTGACACCAAGATCGCTTGTGAATGA 1155 45.8 MSLKSIIQDMRSRSHRVVQDGLPTAVKDGLEQSCWAYMPQELLREVLMRIEASEGDWPPRKSVVACAGVCRSWRVITKEIVKTPETSGKLTFPISIKQPGSRESLLQCFIKRNRSTQTYCLFLSLTSALTDDGKFLLAARKCRRPTCTDYIISIRADDMSKGSSTYVGKLTSNFLGTKFTIFDGQPPHASAKITKSRSTRLVNLKQVSPKIPIGNFPVARISYELNVLGPRRMQCIMDAIPASSIEPGGVAPTQTEASRSHIEFSPSFPFFRSKSINLDNSVTGPLACQKDGMLVLRNKSPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHEKIILQFGKIGKDLFTMDYRYPVSAFQAFAICLSSFDTKIACE 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1170475 1173136 - BLOR00087 Blo01g00087 54527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00087 384 SUPERFAMILY F-box domain 27 78 IPR036047 GO:0005515
Blo01g00087 384 Pfam F-box domain 38 82 IPR001810 GO:0005515
Blo01g00087 384 SUPERFAMILY Tubby C-terminal domain-like 84 384 IPR025659 -
Blo01g00087 384 PRINTS Tubby superfamily signature 314 330 IPR000007 -
Blo01g00087 384 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Blo01g00087 384 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Blo01g00087 384 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Blo01g00087 384 PRINTS Tubby superfamily signature 362 384 IPR000007 -
Blo01g00087 384 PRINTS Tubby superfamily signature 341 360 IPR000007 -
Blo01g00087 384 PRINTS Tubby superfamily signature 296 313 IPR000007 -
Blo01g00087 384 ProSitePatterns Tub family signature 1. 314 327 IPR018066 -
Blo01g00087 384 ProSitePatterns Tub family signature 2. 369 384 IPR018066 -
Blo01g00087 384 PANTHER TUBBY-RELATED 1 384 - -
Blo01g00087 384 Gene3D Tubby Protein; Chain A 93 384 IPR025659 -
Blo01g00087 384 Pfam Tub family 97 379 IPR000007 -
Blo01g00087 384 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00087 Blo-Chr1:1170475 Blo01g01728 Blo-Chr1:57017987 9.45E-147 dispersed
Blo06g00639 Blo-Chr6:29392581 Blo01g00087 Blo-Chr1:1170475 2.49E-12 dispersed
Blo01g00087 Blo-Chr1:1170475 Blo12g00786 Blo-Chr12:26257209 1.04E-149 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11801 PF01167 Tub 3.00E-104 CL0395 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00087 K19600 - zju:107426905 641.728