Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00089 ATGAAGTCTTCTACTAGGCTCGATTCAGCTTCTTTCCAGCTCACGCCCACTAGAACCAGGTGTGATTTAGTCATATCTGCGAAGGGAAAGACAGAGAAGATAGCTTCTGGTTTACTGAATCCTTTTCTGGCTCACTTGAAGACAGCTCAAGAACAGCTGGCCAAGGGGGGTTATACAATTATTCTTGAGCCTGAGCCTAGCAGTAATGCAACATGGTTCACAAGAGGAACTGTGGAAAGATTTGTCCGCTTTGTGAGCACTCCTGAAATCTTGGAACGGGTGTACACCATTGAATCTGAGATCTTACAGATTGAGGAGGCAATTGCGATTCAAGGGCATAATGAAGTAGAGATGGTAGTTGAAAATCAAATAAAACCAGTGGAAAGAGTTGAAGGCAGCAGATCTGTACTAGATACTAATGAGGAGAAAGCAATTGTTCTTTACAAGCCTGGTGTAAACTCACCGGAAGAGAATGGATTTACGGCAGCAGCAGAGGAGAAATCAAAGATGATGACTTTGCTGAGGAAAAACATGGACTACTTCTTGCTGTTTCGGTCGTCTAGAATAGATCTTAGGCTCAATTGGTGGTTGATATTGTGGTTCATTTTGGTACTATTGCCTTGTGATGGAAATCCCTTAACCGTAGGAAGTTACAAATCAGCCATGATTGTTACTGTGTTCGGTGGCCAGCCTCAGACTTGTGGTAGAATACATTCAGTAAACCTTCCTGCTAGAGGAAGTGGAGTTTGTAACATGGAGCTTACTGCACATCAACTACTTATACAAGTCTCTTGTGTATATCTAGATCAAATACTGAAGCTGCACCCATGTTTTCATTCGTCATTGCTCTTTGAGGGAAGTTTTGCTGGCAGCAAGTGCAATTTCTATAGCTGCTGCTTGGTTAAGCTTATGAAAGTCCTGGAGGCACGTAAGTCTGCGCTCCAAAAAGAGCAAGGCATGGCTTTTGCACGAGCAGTAGCTGCTGGGTTTCATGTTGGTGACATGTCATCATTAATGTCATTTGCTGAAGGCTTTGGAGCCTTACGATTAATGGATGCCGGTAGAAAATATATGGAGTTGTGGAAGAAAAAGCACGAAACTGGCCAGTGGTTTGAGATTGAAGCAACTGATGCAATTCCATCCAGATCAGATTTCTCTCCCATGAATGCATCTGGGATCCTACTCACAGATGGAGCTAACAAGCAGAAAGAATATGGGGATGTCTGGGGTGAATCTCACAATGGGATGTGTACTGATGGCAGCAGAAAAGCAAGCAGCAATATGGGTGTAGGTGGATTCAATAAGTATGGAGAAGAATCATTTGAAGCGAGTGAGGATATAAATGAGGGATTAAGATTAGTTATCGAGAGGGAAATGTGTTCTTTTCCTTGGGCTATCATCAAAAGACGTGAGAACCACCAAATTCCCTTGGTAAAGTTCTTTGGCCTTGGGCACATTTTGGGAGCAGAAATCAAGGATGGTAGTGGAGGTGGTTGGCTGAAAAGTGGTGATATTTGTTTTAATAATGCAGTCATTTCTTTGATTCCTAAAAAATCTGGGCCAAACTCTGAACAGCCCGTGTTGAATATAGTGGGGAAGACTAAAGTCCCTAGATCGGCTTGTGAGGCAATTCTCACTTTAGACAATCTTACAAGAAGAGATGAAAAGCTGCGCATGATGAATCAGCAGCCAACAGGCCACCAAGAGCATTTTCAAGGGCAATATCCCCCTCATATGTATCCTCCTTGGCCTATTCATTCTCAGCAATGTTCATTACCAGTATTTCAACCATATCCAATGCAAGGCATGCCTTACTATCAGAACTATGCTGGAAACAGCCCATTTTTCCATCCACCTCATCTGATAGCCGAGGATCTGGGACTCAGTACTGGCCAAAAATTGGGACAAGGAAGGCATTCCTTGGACAGTAAAGGTAACAATGTTGATTCCGAAACTGATGAAGTGGATTCTCCAAATGTAAGAGTAAGGGATGATTTGGACTTGAACAATTCAGCTTTAGAATATCAAGAATCGCAGAAGAAGTCTAGTAAATCAAGTAAAAAGAAAGCGGGAATGGTTGTTATAAGGAACATTAACTACACATCTTCAAGGAAACCTGATTCAGGTGGAGAGGAATCTGAAACAGATGAGGAAGATGGAGAGTCAGAGATCAATAATCCACTAACGAGTAGGAAGAACTCTCTGGAATCCTTAAGAACAGAGAGAAACTCTGAAAAGTTATCCAATCGATCTGGTAAATCTGACAAGGAAGCCAACATTTTGAGGAAGGAGGCAAATGGGCATTGGCAAGCATTCGAAAACTTTTTACTCAGGGATGCAAATGAACACACTGGTGATAATGGTCTGTTTGCTAAAGAAAATGAAGGTAAATTAAAAAGGAGACAAAAAAAGGTTGGAGATGATGCACTGGTTTTTGGACAGCGAGATACAGATGAAATCCATGAAGGAATGATAAGAGGCATGGATAGAATAAGTGGAAAAGTCAGTCGCCGGACAGGTGACAATGATTTTATGGTCCATGGTCAAAAAAATTTTGTGACTGCTCCCTCAGATCCCTTGGTTATAAATGAGTTTGATCATAGGTCAAACCGCTTGGATAGGCAGTCTACAAACAATATCAATGATTCCTATATAGTTTCATTGAAGTCTTCTTCATTGAATCAAGTTGAAAATGGAGGCAGAGATGCAATTGATGGGGATTCTGAGTTCCCATCTGCTGTTTTTGACAATAAAAATATATTTAACAGAGTTGCTAGTCAATTGTATTATGCACCTAATGAATTAAGCATGATGCCAGAGCGAGGAACAGAGAAGAGGTCAACTGGTTATGATCATGCTCTAGATTATGAAATGCAGATCCAGGTTGGAAAGAATCTGAACAAGGAGTCTGGAATGTCTGATTCTAAGAAAGAATCTAAGAAGTTGGACAGGGACCGGAAATCAAAACTCATTGTTGATGCTATTGATAAGAGGAAGACTGGAGGCCCAATCAGACGAGGAAAACCTTCAAAACCAAGTCCTCTAGATGAAGCACGAGTACGTGCTGAGAAGCTAAGAACATATAAAGCTGATCTTCAAAAGATGAAGAGAGAGAAGGAAGAGGAAGAGATTAAAAGGCTGGAAGCATTGAAGATGGAGAGGCAGAAGAGAATTTCTGCTAGAGGCAGTTTTACATCTGCTCAACCATCAATTCCCTCTCAGCAGACCAGGAAACATATGCCAACAAAACTTTCCCCAAGCTCCCTCAAAGGATCAAAATTCACTGATTCAGGGCCTGGATCATTATCACCTCTACAAAGATTTACCAAAAAAAATCCACCCGTTGGCTTGATTGGTTCAAAGAAAGCTTATAAACTTAGCAGAGCAAATACAGAAAGTGACTTGCCTGGTCATAGGCTAAGTCGGTCAGTATCTTCATTGCCTGAACCAAAGAAAGAGAATGAAAGTGACTTGCCTGGTCATAGGCTAAGTCGGTCAGTATCTTCATTGCTTGAATCGAAGAAAGAGAATGGTAGTGTGACAAATGGTAGCAAGGTATCAATGGCACGAATAAGAAGATTATCAGAGCCTAAGACAAGCAGCATGACTAACATTTCCTCTGTGAAGCTGCAGACCATTGAGCCGTTGTCAAAGCAAAAAAAGATCAATGGCTCTGAGAAGAAGAAAATATCTGCTATAGTGAATCATGATAGGAGCAAGGTTGCAACACTTCCGGAACTCAAAATTAGAACATCCAGAAAACCTGATATCGCATTGAGTGGCCCAGTTATAAAAGAAATGGCACAGAACGTTAGTTCTTTGACCTCTGACGGTGCTCATATTGAGAGTAGAAATGGGATTTCCCACCACAGTGAAGCAGATGACAACCCAGTGATTGATAAAACTGTTTTAATGTTAGAATGTGGGTCCGGGAAGCCCACTGACGGGAAAGACCATGCATTACATGAAAAGCTTCAGATGAGTGCTGATATAGAATGCATTAAACACCCATCCCCCGATCTGCCTTTTTCCTATGAGGTTACATTGAGCAATGCAGAGAAGGAAACTCCAAAATTTTCAACTGCTGGAGCTGCTGCAAAACCATACAACGCTCCTTATGCTTGA 4125 41.6 MKSSTRLDSASFQLTPTRTRCDLVISAKGKTEKIASGLLNPFLAHLKTAQEQLAKGGYTIILEPEPSSNATWFTRGTVERFVRFVSTPEILERVYTIESEILQIEEAIAIQGHNEVEMVVENQIKPVERVEGSRSVLDTNEEKAIVLYKPGVNSPEENGFTAAAEEKSKMMTLLRKNMDYFLLFRSSRIDLRLNWWLILWFILVLLPCDGNPLTVGSYKSAMIVTVFGGQPQTCGRIHSVNLPARGSGVCNMELTAHQLLIQVSCVYLDQILKLHPCFHSSLLFEGSFAGSKCNFYSCCLVKLMKVLEARKSALQKEQGMAFARAVAAGFHVGDMSSLMSFAEGFGALRLMDAGRKYMELWKKKHETGQWFEIEATDAIPSRSDFSPMNASGILLTDGANKQKEYGDVWGESHNGMCTDGSRKASSNMGVGGFNKYGEESFEASEDINEGLRLVIEREMCSFPWAIIKRRENHQIPLVKFFGLGHILGAEIKDGSGGGWLKSGDICFNNAVISLIPKKSGPNSEQPVLNIVGKTKVPRSACEAILTLDNLTRRDEKLRMMNQQPTGHQEHFQGQYPPHMYPPWPIHSQQCSLPVFQPYPMQGMPYYQNYAGNSPFFHPPHLIAEDLGLSTGQKLGQGRHSLDSKGNNVDSETDEVDSPNVRVRDDLDLNNSALEYQESQKKSSKSSKKKAGMVVIRNINYTSSRKPDSGGEESETDEEDGESEINNPLTSRKNSLESLRTERNSEKLSNRSGKSDKEANILRKEANGHWQAFENFLLRDANEHTGDNGLFAKENEGKLKRRQKKVGDDALVFGQRDTDEIHEGMIRGMDRISGKVSRRTGDNDFMVHGQKNFVTAPSDPLVINEFDHRSNRLDRQSTNNINDSYIVSLKSSSLNQVENGGRDAIDGDSEFPSAVFDNKNIFNRVASQLYYAPNELSMMPERGTEKRSTGYDHALDYEMQIQVGKNLNKESGMSDSKKESKKLDRDRKSKLIVDAIDKRKTGGPIRRGKPSKPSPLDEARVRAEKLRTYKADLQKMKREKEEEEIKRLEALKMERQKRISARGSFTSAQPSIPSQQTRKHMPTKLSPSSLKGSKFTDSGPGSLSPLQRFTKKNPPVGLIGSKKAYKLSRANTESDLPGHRLSRSVSSLPEPKKENESDLPGHRLSRSVSSLLESKKENGSVTNGSKVSMARIRRLSEPKTSSMTNISSVKLQTIEPLSKQKKINGSEKKKISAIVNHDRSKVATLPELKIRTSRKPDIALSGPVIKEMAQNVSSLTSDGAHIESRNGISHHSEADDNPVIDKTVLMLECGSGKPTDGKDHALHEKLQMSADIECIKHPSPDLPFSYEVTLSNAEKETPKFSTAGAAAKPYNAPYA 1374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1222607 1243115 + BLOR00089 Blo01g00089 54529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00089 1374 MobiDBLite consensus disorder prediction 735 758 - -
Blo01g00089 1374 MobiDBLite consensus disorder prediction 1059 1108 - -
Blo01g00089 1374 MobiDBLite consensus disorder prediction 1354 1374 - -
Blo01g00089 1374 PANTHER COP1-INTERACTING PROTEIN-LIKE PROTEIN 554 1157 - -
Blo01g00089 1374 MobiDBLite consensus disorder prediction 970 1003 - -
Blo01g00089 1374 MobiDBLite consensus disorder prediction 1054 1203 - -
Blo01g00089 1374 MobiDBLite consensus disorder prediction 644 670 - -
Blo01g00089 1374 PANTHER COP1-INTERACTING PROTEIN-LIKE PROTEIN 1 421 - -
Blo01g00089 1374 PANTHER COP1-INTERACTING PROTEIN-LIKE PROTEIN 1160 1374 - -
Blo01g00089 1374 PANTHER COP1-INTERACTING PROTEIN-RELATED 554 1157 - -
Blo01g00089 1374 MobiDBLite consensus disorder prediction 632 758 - -
Blo01g00089 1374 Coils Coil 1015 1057 - -
Blo01g00089 1374 MobiDBLite consensus disorder prediction 1145 1160 - -
Blo01g00089 1374 MobiDBLite consensus disorder prediction 963 1018 - -
Blo01g00089 1374 MobiDBLite consensus disorder prediction 1161 1203 - -
Blo01g00089 1374 PANTHER COP1-INTERACTING PROTEIN-RELATED 1160 1374 - -
Blo01g00089 1374 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00089 - - - qlo:115995145 688.723
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00089 Blo12g00369 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00089 Blo-Chr1:1222607 Blo03g01535 Blo-Chr3:42349715 6.21E-09 dispersed
Blo01g00089 Blo-Chr1:1222607 Blo12g00369 Blo-Chr12:20077470 1.93E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g727 Blo01g00089 Blo12g00369 Bda03g00841 Bda08g00276 . . Bma04g00739 . Cmo08g01052 Cmo17g00154 . . . . . . . . . . . . . . Cla06g00675 Cam06g0725 Cec06g0732 Cco06g0741 Clacu06g0716 Cmu06g0701 Cre06g1472 Cone14ag0156 Cone15ag0168 . . . Csa02g01051 Chy05g00312 . . . . . Bpe05g00856 . . . . . . Cma08g01077 Cma17g00155 Car08g00950 Car17g00138 Cpe12g00133 Cpe17g00200 Bhi12g01604 Tan06g2399 . . . . Lcy13g0386 . . . . . . . Lsi09g01225 . . Cme05g00580
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003371 2 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 3 1 6 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00089 Blo_Chr01 FPKM 13.723402 15.537013 11.876639 14.416289 11.378431 13.31091 11.948732 18.852743 19.854748 20.35191