Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00096 ATGGCCTCCACTGGCCACAACTCTACCTCAATTTCTTACCTCAAATCACCAATCGTTGAAGAGTTTTTGTACTGGAAAGAAAACACAGTAGTGAGTTGTCCAACGCAACAACTTACTTCAGCTCACAACCTCCCTTCAACGCACAATGGCATCACTCCTATGTACAGACACTTGCTCTTGGCTCTCAATGAAAGTCTCACACTCAAGAGACTTCTCCCATGCACAGAGAATGGAAACTACAGAGAGTTGCTTCAACTGGAACGATTTAATAACGTGAAGGCTTACCTGGAAGAGGGGAGTGGTGTTCAGTCACCCACCGCGATGGGGGAGGTCGCCGAGGCATGGAGGGGAATGTTGGGCTATCGTTTGAGTTCCGACGACTTCGTGCATTTCGAGCCAATACCCGAAAAGATTGCTGCTCTAGTTGCTATTCTGGCTAATCCGTGGTGGGCCGGCCAAGTAGGGCTGCCGATAATCGACTCGGCAGCCAATTCATCTCTTCTGAAACTTCAACGCGACCGTGAAACCTCCATGAACGATCAAAACAGTAGAGAAGACGATGATGACGACAGAGAAAACGGATCAGACGAGCCAAAAGAAGGAGCCGTCGAGATCGGAAATCGCAGACCGAGAGGCCGTCCACCAGGATCCAAAAACAAGCCGAAACCACCGATTTTCGTGACCCGAGACAGCCCAAACGCCCTCCGCAGCCACGTTATGGAGGTCGCCGGAGGAGCTGATGTGGCGGAGAGCGTAGCTCAGTTCGCTAGGCGTAGGCAGCGGGGTGTGTGCGTGCTGAGCGCTAGCGGCGCAGTCACGAACGTCACCATACGCCAGCCTGCAACACCTGGTGCTGTGGTGGCACTACATGGACGGTTCGAGATTTTGTCACTGACCGGAGCTTTTCTGCCAGGTCCGGCCCCACCCGGGTCTACGGGTATGACTGTTTATCTCGCCGGAGGGCAAGGACAGGTCGTCGGAGGGAGTGTAGTTGGGTCACTAGTCGCAGCAGGGCCAGTTATGGTGATTGCTGCAACTTTTTCCAATGCGACTTACGAGAGATTGCCTCTTGAAGATGACGATGGTAATGAAGGTGGAATAGGTAGTCCAGGAGCTGGAACCTCCCCTCCGTCGATGGGAGGTAGCGGAGGGAATTTCCCGGCGGGTTTGGCGGATTCTTCTTCTGCACTTCCCGTCTATAATTTGACTCCAAATCTTATTCCCAATGGAGGTCAACTTGGACATGAAGCTGCTTATGCTGCTTGGGGTGGCCATGGGAGGCCAAACTACTGA 1293 52.98 MASTGHNSTSISYLKSPIVEEFLYWKENTVVSCPTQQLTSAHNLPSTHNGITPMYRHLLLALNESLTLKRLLPCTENGNYRELLQLERFNNVKAYLEEGSGVQSPTAMGEVAEAWRGMLGYRLSSDDFVHFEPIPEKIAALVAILANPWWAGQVGLPIIDSAANSSLLKLQRDRETSMNDQNSREDDDDDRENGSDEPKEGAVEIGNRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVAGGADVAESVAQFARRRQRGVCVLSASGAVTNVTIRQPATPGAVVALHGRFEILSLTGAFLPGPAPPGSTGMTVYLAGGQGQVVGGSVVGSLVAAGPVMVIAATFSNATYERLPLEDDDGNEGGIGSPGAGTSPPSMGGSGGNFPAGLADSSSALPVYNLTPNLIPNGGQLGHEAAYAAWGGHGRPNY 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1373199 1379156 + BLOR00096 Blo01g00096 54536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00096 430 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 150 429 IPR014476 GO:0003680
Blo01g00096 430 MobiDBLite consensus disorder prediction 355 387 - -
Blo01g00096 430 ProSiteProfiles PPC domain profile profile. 232 368 IPR005175 -
Blo01g00096 430 CDD DUF296 236 319 IPR005175 -
Blo01g00096 430 Gene3D - 235 363 - -
Blo01g00096 430 Pfam Plants and Prokaryotes Conserved (PCC) domain 236 349 IPR005175 -
Blo01g00096 430 SUPERFAMILY AF0104/ALDC/Ptd012-like 233 361 - -
Blo01g00096 430 MobiDBLite consensus disorder prediction 172 233 - -
Blo01g00096 430 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 150 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00096 Blo-Chr1:1373199 Blo04g00266 Blo-Chr4:2021023 7.11E-82 dispersed
Blo01g00096 Blo-Chr1:1373199 Blo12g00363 Blo-Chr12:19811216 1.64E-139 wgd
Blo01g00096 Blo-Chr1:1373199 Blo07g00251 Blo-Chr7:3091540 1.01E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00096 - - qsu:111993894 367.466