Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00099 ATGGTTCGGGACGGGCATGTGGTGCCGGCCGACCCACAGGCTTTGGTGGTGCCGAAGAAGAAGGGTCAATCGGCTCGGAGTTGGATGCTTTTGAATTCAACCGGCCAAGGTACCGTCCTCGATTTCGACAAGTATGCTGTAATGCACCGGGTCCAGATTCATGCACGAGACCTTCGGATTCTAGATCCATTGCTCTCTTATCCGTCCACCATTCTTGGCCGTGAGAGAGCCATTGTTCTTAATTTGGAGCATATCAAGGCAATTATTACCGCTGAAGAGGTTTTGCTACGAGATCCAATGGATGAGAATGTTATCCCAGTTGTTGAAGAGCTACAAAGGCGATTGCCTCCCACTAATGCCATCCAGCTTCAAAAGCAAGGAGATGGGAAAGAGTATTCTGGCAGGCATAATGATGTTGAAGCCGGTGATGAAGATGATTCTCCATTTGAATTTCGAGCCCTAGAGGTAGCTTTAGAAGCCATTTGTAGTTTTCTTGCTGCACGGACAACAGAACTGGAGACTACTGCCTATCCTGCCTTAGATGAGCTCACCTCCAAAATTAGTAGCCGTAACTTGGACAGAGTTCGTAAACTGAAAAGTGCAATGACTAGGTTGACAGGAAGAGTTCAAAAGGTGAGGGATGAGCTTGAGCAGCTATTGGATGACGATGACGATATGACAGACCTTTACTTGACAAGAAAGTTAGCTGGGGCATCTTCTCCTGTTAGTGCCTCTGGTGTTCCTAATTGGTATCCTGCCTCTCCTACGATAGGTTCTAAAATATCAAGAGCAAGCAGAGCTAGTATCGCAACTGTTCGTGGAGATGATAATGATGTTGAAGAGCTTGAAATGTTGCTGGAGGCTTACTTTATGCAAATTGATGGCACATTGAACAAATTAACTACGTTGCGCGAATATATAGATGACACAGAAGATTACATTAATATTCAGCTTGATAATCATCGAAATCAGCTCATTCAGCTGGAGCTTTTTCTCAGTTCAGGGACTGTTTGTTTGGCCATTTATTCTTTGGTGGCTGCGATTTTTGGCATGAATATCCCGTACACTTGGAATAACGATTATGGTTTCATGTTCAAATGGGTCGTCATCGTGACGGGAGTTGCTTGTGCAATTCTTTTTGTGATTGTCATTTCATACGCTCGCCACAAAGGTTTGGTGGGATCGTGA 1188 44.78 MVRDGHVVPADPQALVVPKKKGQSARSWMLLNSTGQGTVLDFDKYAVMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPMDENVIPVVEELQRRLPPTNAIQLQKQGDGKEYSGRHNDVEAGDEDDSPFEFRALEVALEAICSFLAARTTELETTAYPALDELTSKISSRNLDRVRKLKSAMTRLTGRVQKVRDELEQLLDDDDDMTDLYLTRKLAGASSPVSASGVPNWYPASPTIGSKISRASRASIATVRGDDNDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLAIYSLVAAIFGMNIPYTWNNDYGFMFKWVVIVTGVACAILFVIVISYARHKGLVGS 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1401419 1405527 - BLOR00099 Blo01g00099 54539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00099 395 Pfam CorA-like Mg2+ transporter protein 266 383 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Blo01g00099 395 Coils Coil 195 222 - -
Blo01g00099 395 Gene3D - 15 99 - -
Blo01g00099 395 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 331 383 IPR045863 -
Blo01g00099 395 MobiDBLite consensus disorder prediction 124 144 - -
Blo01g00099 395 PANTHER MAGNESIUM TRANSPORTER MRS2-I 1 395 - -
Blo01g00099 395 Gene3D Magnesium transport protein CorA, transmembrane region 106 325 - -
Blo01g00099 395 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 395 IPR039204 -
Blo01g00099 395 MobiDBLite consensus disorder prediction 129 144 - -
Blo01g00099 395 CDD Mrs2_Mfm1p-like 28 392 IPR039204 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00099 K16075 MRS2, MFM1; magnesium transporter - vvi:100244262 620.928
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00099 Blo-Chr1:1401419 Blo10g00506 Blo-Chr10:11257200 3.41E-118 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g607 Blo01g00099 . . Bda08g00266 . . . . Cmo08g01086 Cmo17g00183 . . . . . . . . . . . . . . Cla06g00628 Cam06g0667 Cec06g0671 Cco06g0676 Clacu06g0654 Cmu06g0647 Cre06g1415 Cone14ag0131 Cone15ag0138 . . . Csa02g01103 Chy05g00362 . . . . . Bpe05g00868 . . . Sed09g0722 . . Cma08g01112 Cma17g00187 Car08g00995 Car17g00166 Cpe12g00161 Cpe17g00172 Bhi12g02261 Tan06g2463 Cmetu05g0340 . Hepe03g0248 . Lcy13g0329 . . . . . . . Lsi09g01276 . . Cme05g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo10g00506 . 1 443 MRS2 Gene Family AT1G16010 82.7 5.3e-199 690.6
Blo16g01085 . 40 420 MRS2 Gene Family AT1G16010 55.9 2.6e-113 406.0
Blo01g00099 . 1 368 MRS2 Gene Family AT5G64560 81.3 5.2e-163 570.9
Blo03g00064 . 40 535 MRS2 Gene Family AT3G19640 62.8 2.9e-150 528.9
Blo03g00296 . 63 465 MRS2 Gene Family AT3G58970 67.2 5.2e-138 488.0
Blo16g01085 . 13 420 MRS2 Gene Family AT2G03620 64.2 7.0e-132 467.6
Blo10g00506 . 13 443 MRS2 Gene Family AT2G03620 52.3 9.8e-110 394.0
Blo01g00099 . 1 330 MRS2 Gene Family AT5G09690 76.2 6.9e-132 467.2
Blo01g00099 . 12 290 MRS2 Gene Family AT5G09720 66.0 9.3e-91 330.5
Blo10g00506 . 1 443 MRS2 Gene Family AT1G80900 83.3 3.1e-199 691.4
Blo16g01085 . 25 420 MRS2 Gene Family AT1G80900 53.3 4.5e-113 405.2
Blo03g01303 . 1 415 MRS2 Gene Family AT5G22830 66.0 1.4e-138 490.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00099 Blo_Chr01 FPKM 0.420083 0.255225 0.42846 0.0 0.0 0.0 0.065571 0.0 0.205838 0.064304