Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00106 ATGTCACAGTCTCTGCACTTCTTCACCCCGTCCACTCGGTCCCCAAATCTCGCTTTGCCTAAGCAATCTTGTCCTAAACCTTTTCCATTTTCTTCCAACTCCAACCGCCGTTTTCCGGCCATCTTCACTGGGTTTTCGATAAAAGCGTCTGCTTCTTCGGATCTCGACCCGTCTTCGTTCTCTTCACCAGTTTTAGTGTCTGCTAATGGAACGAGCGTCGGAGCTGGAGTTGCAACTCCTGGGTTACGTGACTACCAACCGGTACTATCTGATTCGAGCTCCATCGATGTCGATGCTGTAACAGAGACGGAGCTTAAGGAGAATGGATTCAGGAGCACGAGGAGGACGAAGCTTGTTTGCACCATTGGCCCTGCCACTTGTGGGTTCGAGCAGCTTGAGGCTCTTGCAGTCGGAGGAATGAATGTGGCTCGGATCAACATGTGCCATGGCACACGTGAGTGGCATAAGACGGTGATTGAACGGGTGCGGAGGCTCAATGAAGAGAAAGGGTTTGCCGTTGCCATTATGATGGACACCGAAGGGAGTGAAATTCACATGGGGGATCTTGGTGGTGCATCTTCTGCCAAAGCTGAGATATCTTGTTCATATACAGATGTTTTTTTTTGTCATAAGGGAACTTATTATTGCTTATTCTTTGTAGATTGGTTGGATATCGACTTTGGAATTGCAGAGGGTGTGGAGTTCATTGCCATATCTTTTGTCAAGTCTGCTGAAGTGATTAAACATCTTAAGAGCTATATTGCTGCCCGTTCTCGTGATGGTGACATTTCTGTGATTGCAAAGATTGAGAGCATTGACTCCTTAAAGAACTTGGAAGAAATTATCAAAATATCAGATGGAGCTATGGTTGCCAGAGGAGATCTGGGTGCTCAAATACCATTGGAACAGGTTCCATTAGCGCAGCAAAGAATTGTCAATCTATGCAGACAGCTAAATAAACCTGTCATTGTTGCTTCTCAACTGCTTGAATCTATGATTGAGTACCCTACACCCACTAGAGCCGAAGTTGCTGATGTTTCAGAAGCCGTCAGACAGCGGGCAGATGCTTTGATGCTCTCTGGTGAATCGGCTATGGGACAATATCCAGAGAAGGCCTTGGCTGTTTTAAGAAATGTTAGTGTAAGAATTGAGAAGTGGTGGAGAGATGAAAAGCGCCATGAACAGATGGAACTAGGGGAGATTGGATCATCATTCAGTGACAGTATTTCGGAAGAGATTTGTAATTCGGCTGCCAAAATGGCTAACAATTTGGAGGTAGATGCACTTTTTGTCTATACAAAGACAGGCCAGATGGCGTCTCTACTGTCTCGATGCCGACCCGATTGTCCAATCTTTGCATTTACAGACACAACTTCAATGAGGAGGCGCCTGAATTTACAATGGGGGCTTATACCATTTCGTTTAAGCTTCTCTGACGACATGGAAAGCAACCTTAACAAGACCTTCTCGTTGCTCAAAGCCCGGAATTTGATTAAATCAGGTGATCTTGTCATTGCTGTCTCAGACATGTTGCAGTCCATCCAGAACCGGCCTGGTATCGGAGAACAGGACCTTAACCGGTCCTTTCGGTACCAGGTTTGGTCCACATATATGGAGCACCGGACTGGATTCGGTCTGGTGCTATCGGGACCGGTTCTACACGGTACCGGTCCCTGGTACACGGTACCAGAGAACGGATTTTCCAAATCCCGCCTGGCTAAGCAGCTTCCCGACCCTAATCGATCCGACGTCCGACGATCTCTAATCCAGCAGGCAGCAGCCTCCTCGTCCCGGCCTCGACTCGACTCCTCATCGGCGCTCGCGCTCCACTCTCCAGGCTCCTCATCGGCGCTCCACTCTCTAGCCTCGTCCTCGTTAGCCAGCGAAAAGCGAGCTCCGATTTCCGTCCGTCGACAGTCGCCAGTCGCCACTGCTAGCTCCGAGCTGACGAGCTCCGTCCGTCGATCGTCGCTAGTCGCCACTACCAGCTCTGAGCTCCGAGTTCCGAGCTCCGTTCATCTACAACTGCCGCTGCCAGCTCCGAGCTCCGACCTCTGTCCAGTGTCCATCGCCACGACGCCACTGCCACTGCCAGCTAGCTTGGTTAGCACTCTAATGTACTCTATTCTGTGTAGTGTTTTGTTGCTGAATGATCTGGTACAAAATCGGTACCAAACCGGAATCGGAACTGGTAAACCCCAGTCCAGAACCGGACCGGAACCGGTTCACTGTGGGACCGATACCGGTCTTCCAAAAAAGGGAACCGGTACCGCCGATCCGGTGCCGGACCGCTGTAAAAACCGGACCGGACTGGTACCGTGCACACGCCTACTAGATATCCTAGATAAGTGA 2352 49.87 MSQSLHFFTPSTRSPNLALPKQSCPKPFPFSSNSNRRFPAIFTGFSIKASASSDLDPSSFSSPVLVSANGTSVGAGVATPGLRDYQPVLSDSSSIDVDAVTETELKENGFRSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHKTVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLGGASSAKAEISCSYTDVFFCHKGTYYCLFFVDWLDIDFGIAEGVEFIAISFVKSAEVIKHLKSYIAARSRDGDISVIAKIESIDSLKNLEEIIKISDGAMVARGDLGAQIPLEQVPLAQQRIVNLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQYPEKALAVLRNVSVRIEKWWRDEKRHEQMELGEIGSSFSDSISEEICNSAAKMANNLEVDALFVYTKTGQMASLLSRCRPDCPIFAFTDTTSMRRRLNLQWGLIPFRLSFSDDMESNLNKTFSLLKARNLIKSGDLVIAVSDMLQSIQNRPGIGEQDLNRSFRYQVWSTYMEHRTGFGLVLSGPVLHGTGPWYTVPENGFSKSRLAKQLPDPNRSDVRRSLIQQAAASSSRPRLDSSSALALHSPGSSSALHSLASSSLASEKRAPISVRRQSPVATASSELTSSVRRSSLVATTSSELRVPSSVHLQLPLPAPSSDLCPVSIATTPLPLPASLVSTLMYSILCSVLLLNDLVQNRYQTGIGTGKPQSRTGPEPVHCGTDTGLPKKGTGTADPVPDRCKNRTGLVPCTRLLDILDK 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1462035 1477855 - BLOR00106 Blo01g00106 54546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00106 783 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 103 387 IPR015813 GO:0003824
Blo01g00106 783 Pfam Pyruvate kinase, barrel domain 114 192 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Blo01g00106 783 Pfam Pyruvate kinase, barrel domain 221 386 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Blo01g00106 783 ProSitePatterns Pyruvate kinase active site signature. 263 275 IPR018209 GO:0004743|GO:0006096
Blo01g00106 783 PANTHER PYRUVATE KINASE 221 515 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Blo01g00106 783 PANTHER PYRUVATE KINASE 91 198 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Blo01g00106 783 Gene3D - 114 181 IPR040442 -
Blo01g00106 783 Gene3D - 221 383 IPR040442 -
Blo01g00106 783 MobiDBLite consensus disorder prediction 730 762 - -
Blo01g00106 783 MobiDBLite consensus disorder prediction 639 664 - -
Blo01g00106 783 MobiDBLite consensus disorder prediction 630 664 - -
Blo01g00106 783 MobiDBLite consensus disorder prediction 590 609 - -
Blo01g00106 783 Gene3D - 384 510 IPR036918 -
Blo01g00106 783 Pfam Pyruvate kinase, alpha/beta domain 411 510 IPR015795 -
Blo01g00106 783 SUPERFAMILY PK C-terminal domain-like 372 512 IPR036918 -
Blo01g00106 783 Gene3D - 182 195 IPR015806 GO:0004743|GO:0006096
Blo01g00106 783 PANTHER PLASTIDIAL PYRUVATE KINASE 1, CHLOROPLASTIC 221 515 - -
Blo01g00106 783 PANTHER PLASTIDIAL PYRUVATE KINASE 1, CHLOROPLASTIC 91 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00106 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - mnt:21396528 535.798
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00106 Blo-Chr1:1462035 Blo09g00048 Blo-Chr9:751049 1.13E-87 dispersed
Blo13g00166 Blo-Chr13:5894615 Blo01g00106 Blo-Chr1:1462035 2.69E-22 dispersed
Blo16g01193 Blo-Chr16:40428819 Blo01g00106 Blo-Chr1:1462035 4.57E-13 dispersed
Blo01g00106 Blo-Chr1:1462035 Blo03g00059 Blo-Chr3:2206831 4.12E-115 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g584 Blo01g00106 . . Bda08g00261 . . . Bma05g01085 . . . . . . . . . . . . . . . . Cla06g00619 Cam06g0657 Cec06g0661 Cco06g0667 Clacu06g0644 Cmu06g0638 Cre06g1405 . . . . . Csa02g01116 Chy05g00372 . . . . . Bpe05g00875 . . . Sed09g0729 . . Cma08g01117 Cma17g00198 Car08g01000 Car17g00175 Cpe12g00169 Cpe17g00168 Bhi12g02248 Tan06g2474 Cmetu05g0533 . Hepe03g0236 . Lcy13g0319 . . . . . . . Lsi09g01285 . . Cme05g00500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006080 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00106 Blo_Chr01 FPKM 1.356414 0.554563 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0