Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00110 ATGAAGGTGGTGGAGAGGAGGTTGAGAGAGAAAGCTTGCATGTTGCTCTCTCTTCTTCTGTTTAGCTTCATCGGTGGAATCGACTCTTTATCGGTTACGGTTAAGGAGCTTGAGTGTGTTTACGAATACGTTTTATCCGACGGAGACATCGTATCTGGAAACTTCGTCGTTCTCGATCATCATATTTTTTGGGGCTCCGGTCAGTACGGCATTGAGTTCACGGCAACCTCTCCCGGAGGTAATGTTGTCAAAACTTTTAAGGGAACATCAGGAGAGAAGTTCATATTCAAGGCCTCACGTGCTGGAATGTACAAATTTTGTTTTCATAATCCTTACTCAACACCAGAGACAGTTTCTTTTCATATCCATGTTGGGCATATTCCAAACGAGCTTAATCTTGCCAAAGATGAACATCTTGACCCTGTATCTGTTCAGATTGCACACCTTAGAGAGGCATTGGAGTCTGTTACATCTGAGCAGAAATACTTGAAAGCACAAGATACACGACACCGTCGTACCAATGAGAGCACACGGAATCGGGTGATACTATACACTGTTGGAGAGTACATTATGCTAGGAATTGCAAGTGCTCTACAAGTCATTCACATTCGTCGCCTCTTCAGCAAGTCCGCCGCCTATAACCGGGTCCCTAATTCTAAAGAAGATGCTACTGAGTTATTGGAAAGTGTTGAAGAGTCCGGAAAGTTGAACTCCCCCAGGTTGAGTTTGGTTGGTGGTGGCGAATGTGATGTTGAGGATGATTTGGTTCTCGACGTTTCTGGGAAAATTTTGGACTTTCCTTTGGAGAAGAGTTTGGAAGATACGGTGAAGGGTTTGTATGTGTATAGAAACGTGTTTAATTTAATTCCAGAATCTCTCGGTGGATTACGGCAGTTGAGGACGTTGAAGTTTTTTGGAAATGAGATTAATTTGTTTCCGTCGGAGTTGAAGAACTTGGTGGGGTTGGAATGCTTGCAGGTGAAAATATCTTCACCTGGATTCGGTGGGTTACCCTTGCATATGATCAAGGGTTTGAAGGAGCTTGAGCTGTCTAAAGTGCCACCACGGCCTTCAGCTTTTCCCATTCTTAGTGAGATTACTAGTCTCAAGTGCTTGAAGAAGCTCTCTATTTGTCACTTCTCCATAAGATTTCTTCCTTCAGAAATTGGCTGCTTAAATAATTTGGAGTTTTTAGATCTCTCCTTCAATAAAATCAAGACCATGCCCTCTGAAATAAGTTATTTGAATGACTTGATAACATTGAAAGTTGCTCATAATAAATTGGTGGAATTACCATCAGCTTTGCCCTCCCTGCCAAAGTTGAAGAACTTGGACCTGTCAAATAATAGGTTGACTTCATTGGGGTCTCTTGACCTTCCATCAATGCATAACCTTCGAAATCTTAATCTAAAGTTCAATAAGCTTCTGAATAATTTTAGCATACCTGCCTGGATATGCTACCAATTAGAAGGAAATGATGGATATACATCAAATGGTGATTGTACAAGTTCTATCGTTGAAATGGATTTATATAAAGAAAACAATGACAAGATTGCAAAATTTTCTCACAAAGGCACCCATCATACATTATCAAGTTTATCAGGTGGACTTTCATCAAACAGTAGATGTTTTGCTACTCGAAGGTCAGGTAGAAAGTGGAAGCGACAATATTATTTACAGCAGAAAGCTCGTCAAGAACGTTTAAATAACAGTAGGAAATGGAAAGGAGTAGATCAGTCTGACATTTTGACGGTTGGGCAGAATGAAAATTACCAGGCGTCCAGTTTAAGCACCCTTTCTTCTGATACTTGTGCAGAAGCTGCATCAGCGATTCTTTGTCCCAATGATGATAAAGCTTTACAATTTGCAGATGCGGAAAATGATAGTTCACTTGAAGGTCTTGAGAACAGAGAAATCTGCTCTGAAGAAAAAGTTTCTGTAGAAAACTGTTGTTGCACTGCTGCAAGTGAAGGTAGTGAAAATGAATGTTGTGAGAATGATGCATCTTTATCTTCCAATCATAATAGTGGAGACGAGCAAGATGATATTTCATCTCTGGAGACACCAATGAAACTTAAGTTTAAGAGGCCTTCTGAAAGGGATCTTGATAACCCAAAGCCATGCAAGGCTTGTAAACCAGCTAAAGATAGTTCTACACTATCATGCAAGTATAGTAGCATATCCTTTTGCACCATTGATGATTATCTACCAGATGGTTTCTATGATGCGGGACGTGACCGACCATTCATGTCAATGCAGAGCTACGAGGAAAATATCCACCTTGATGCAAGGGAAGTTATTTATTTGGACAGAGACCGAGATGAAATGTTGGATGCTATTGTACTTTCTGCACAGACAATGATGCGGCATTTAAAACAGATAAATGGTGTAACAAATTATGGGAATCAATCTAATGTTGATGATCTATTGACCGCTTCATTGCTTGCGCTGTTTGTATCGGATCATTTTGGAGGCAGTGATAGAAGTGCGATTGTAGAAAGGACTCGGAAAGCTGTGTCTGGTTCTAACTATGAGAATCCTTTCATTTGTACATGTTCAACTGGAAACAGGGACTGGATGGACATGTCTGCTGGACCAATGGGGCATGCGGTGGAAGACATAATTTTTTCAGATCTGTGTGAAAAATCACTGCAGTATATTCCTCTTAGTCGCTCTAAAGTTCCAATTTCTCTTGGAGAGATGTCTGGTCCTGGTTGTTCCTTTACGTCTCTTTTGACTTGTGATGAAATTGAAAAATCAACTTCCAGTTCAGTTGTAAAATGCAAATTGGGATCCGTGGAGACAGCAGCAAAGGTTCGTACTTTGGAAGTTTCTGTCTCTGCTGTGGATCAAATTAGGAAATTTGAGTATAGCTGGCTAGCGGAAGTAAGAATGTTAGGTGCTTTAAAACACTCATGCATAATAGAGATGTATGGACATCAGCTATCTTGCAAGTGGATTCCTTCTGTGGATGGAGAACCAGAACTTCGTCTCCTACAGTCTGCAATATTTTTAGAGTACATAAAAGGAGGATCCTTGAAGAGTTACATTGAGAAGTTGTCTAAGGCTGGGGAGAAGAGTGTTTCAGTTCACTTAGCGTTATGTATTGCTAGAGATGTTGCATGTGCTTTAGCAGCCATGCATTCAAGACACATTATACATCGTGACATAAAAAGTGAGAACGTATTGATTGATTTGGATAAGAAGAGATCTGATGGTTCTCCTTTAGTGAAGCTGTGTGATTTTGATAGAGCTGTCCCTCTTCGTTCTTCCTTGCACACCTGCTGTATTGCTCATTTTGGGGTACCTGCCCCAGATGTTTGTGTTGGAACGCCTCGTTGGATGGCCCCAGAGGTTCTGCAGGCAATGCATCGAGGCAATAAATATGGAGTGGAAGTGGATATATGGTCATTTGGATGCCTATTATTGGAACTATTGACACTGCAAATCCCGTACTTGGAATTATCTGAGATGCAGTTTTGTGACCAACTTATGATGGGAAAACGTCCTCGATTGACAGATGAGCTAGAAGCTTTGGGAACCTTAGAGGATAGCTCAATAACTCACTCTGATACAGATGGGAGCAAAAACTCGGAAGCCGAGTTGAGTGATCTTAAATTCCTGATTGATCTATACCACCAATGTACTCAGGAGAATCCTAGTGACCGGCCAACAGCTGATAATCTTTACGAATCATTGTTGGCAAGAACAACCAAGTTGTCCGGCTGA 3729 41.0 MKVVERRLREKACMLLSLLLFSFIGGIDSLSVTVKELECVYEYVLSDGDIVSGNFVVLDHHIFWGSGQYGIEFTATSPGGNVVKTFKGTSGEKFIFKASRAGMYKFCFHNPYSTPETVSFHIHVGHIPNELNLAKDEHLDPVSVQIAHLREALESVTSEQKYLKAQDTRHRRTNESTRNRVILYTVGEYIMLGIASALQVIHIRRLFSKSAAYNRVPNSKEDATELLESVEESGKLNSPRLSLVGGGECDVEDDLVLDVSGKILDFPLEKSLEDTVKGLYVYRNVFNLIPESLGGLRQLRTLKFFGNEINLFPSELKNLVGLECLQVKISSPGFGGLPLHMIKGLKELELSKVPPRPSAFPILSEITSLKCLKKLSICHFSIRFLPSEIGCLNNLEFLDLSFNKIKTMPSEISYLNDLITLKVAHNKLVELPSALPSLPKLKNLDLSNNRLTSLGSLDLPSMHNLRNLNLKFNKLLNNFSIPAWICYQLEGNDGYTSNGDCTSSIVEMDLYKENNDKIAKFSHKGTHHTLSSLSGGLSSNSRCFATRRSGRKWKRQYYLQQKARQERLNNSRKWKGVDQSDILTVGQNENYQASSLSTLSSDTCAEAASAILCPNDDKALQFADAENDSSLEGLENREICSEEKVSVENCCCTAASEGSENECCENDASLSSNHNSGDEQDDISSLETPMKLKFKRPSERDLDNPKPCKACKPAKDSSTLSCKYSSISFCTIDDYLPDGFYDAGRDRPFMSMQSYEENIHLDAREVIYLDRDRDEMLDAIVLSAQTMMRHLKQINGVTNYGNQSNVDDLLTASLLALFVSDHFGGSDRSAIVERTRKAVSGSNYENPFICTCSTGNRDWMDMSAGPMGHAVEDIIFSDLCEKSLQYIPLSRSKVPISLGEMSGPGCSFTSLLTCDEIEKSTSSSVVKCKLGSVETAAKVRTLEVSVSAVDQIRKFEYSWLAEVRMLGALKHSCIIEMYGHQLSCKWIPSVDGEPELRLLQSAIFLEYIKGGSLKSYIEKLSKAGEKSVSVHLALCIARDVACALAAMHSRHIIHRDIKSENVLIDLDKKRSDGSPLVKLCDFDRAVPLRSSLHTCCIAHFGVPAPDVCVGTPRWMAPEVLQAMHRGNKYGVEVDIWSFGCLLLELLTLQIPYLELSEMQFCDQLMMGKRPRLTDELEALGTLEDSSITHSDTDGSKNSEAELSDLKFLIDLYHQCTQENPSDRPTADNLYESLLARTTKLSG 1242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1524844 1534201 - BLOR00110 Blo01g00110 54550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00110 1242 ProSiteProfiles Protein kinase domain profile. 919 1235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g00110 1242 ProSiteProfiles Leucine-rich repeat profile. 440 461 IPR001611 GO:0005515
Blo01g00110 1242 PANTHER BNAC08G43810D PROTEIN 885 1238 - -
Blo01g00110 1242 Gene3D Transferase(Phosphotransferase) domain 1 907 1240 - -
Blo01g00110 1242 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1052 1064 IPR008271 GO:0004672|GO:0006468
Blo01g00110 1242 SUPERFAMILY RNI-like 277 477 - -
Blo01g00110 1242 Pfam emp24/gp25L/p24 family/GOLD 35 207 IPR009038 -
Blo01g00110 1242 ProSiteProfiles Leucine-rich repeat profile. 394 415 IPR001611 GO:0005515
Blo01g00110 1242 PANTHER BNAC08G43810D PROTEIN 278 899 - -
Blo01g00110 1242 SMART EMP24_GP25L_2 29 208 IPR009038 -
Blo01g00110 1242 SMART serkin_6 911 1234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g00110 1242 Gene3D Ribonuclease Inhibitor 235 525 IPR032675 -
Blo01g00110 1242 SMART LRR_sd22_2 438 459 - -
Blo01g00110 1242 SMART LRR_sd22_2 392 417 - -
Blo01g00110 1242 MobiDBLite consensus disorder prediction 680 703 - -
Blo01g00110 1242 MobiDBLite consensus disorder prediction 667 703 - -
Blo01g00110 1242 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 885 1238 - -
Blo01g00110 1242 SMART LRR_bac_2 415 434 - -
Blo01g00110 1242 SMART LRR_bac_2 392 411 - -
Blo01g00110 1242 SMART LRR_bac_2 438 457 - -
Blo01g00110 1242 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 278 899 - -
Blo01g00110 1242 Pfam Protein kinase domain 923 1231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g00110 1242 ProSiteProfiles GOLD domain profile. 37 124 IPR009038 -
Blo01g00110 1242 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 50 129 IPR036598 -
Blo01g00110 1242 SUPERFAMILY Protein kinase-like (PK-like) 911 1233 IPR011009 -
Blo01g00110 1242 SMART LRR_typ_2 392 415 IPR003591 -
Blo01g00110 1242 SMART LRR_typ_2 296 318 IPR003591 -
Blo01g00110 1242 SMART LRR_typ_2 438 461 IPR003591 -
Blo01g00110 1242 SMART LRR_typ_2 462 488 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00110 - - - sind:105158530 787.719
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00110 Blo12g00343 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00110 Blo-Chr1:1524844 Blo13g00441 Blo-Chr13:24717804 1.27E-27 dispersed
Blo12g00343 Blo-Chr12:19341966 Blo01g00110 Blo-Chr1:1524844 0 transposed
Blo01g00110 Blo-Chr1:1524844 Blo12g00342 Blo-Chr12:19297851 3.25E-49 wgd
Blo01g00110 Blo-Chr1:1524844 Blo07g00233 Blo-Chr7:2918956 1.65E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84067 PF00069 Pkinase 4.20E-38 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00110 Blo_Chr01 FPKM 60.221939 64.071541 64.468605 64.521858 87.350517 82.143814 77.243561 107.295547 131.878952 113.497826