Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00133 ATGAGCACGAGCCCAGCTGCCAGTAGCGGCGGCGGATCAGGAGGCAGCGGAAGCGGCGGTGGAGGAGGACCCTGCGGAGCCTGCAAGTTCCTGCGTAGAAAGTGCGTGCAGGGGTGCATATTCGCCCCCTACTTCGATTCAGAGCAAGGCGCCGCCCATTTTGCGGCGGTTCACAAGGTGTTCGGCGCCAGCAATGTGTCGAAGCTCCTCCAACATATTCCAGTCCACAAGCGCCTCGACGCGGTCGTCACCATTTGTTACGAAGCTCAAGCTCGCTTAAGAGACCCTGTTTATGGCTGCGTCGCCCACATATTTGCCCTCCAACAGCAGGTAGTTAATCTTCAAGCGGAGCTCTCCTACTTACAAGCACAATTAGCAACCCTAGAGCTTCCGTCACCACCTCCTCCACCGCCGCCGCCGCCTCCACCACTCTCTATTGCTGACCTCCCATCTTCCGCCTCCACTCCAGTCTCCTATGACTTATCGACTCTTTTCGATCCAGTGGTTCAACCATCGTGGACTGTCCAGCATCGGTTGGTTCAACCGCGACCGTTTGAGTCCGGTGGCGGCTCAGCCCCTGTCGGTGATGGCAGTGGCTGTGAAGGTGGTGATCTTCAAGCTTTGGCAAGAGAACTTCTTAATAGACATGGCACTTCTACTCCATGTACCAATGCTTCATCATCCCCATCCCTAACTCAATGA 702 56.13 MSTSPAASSGGGSGGSGSGGGGGPCGACKFLRRKCVQGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLQHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAQLATLELPSPPPPPPPPPPPLSIADLPSSASTPVSYDLSTLFDPVVQPSWTVQHRLVQPRPFESGGGSAPVGDGSGCEGGDLQALARELLNRHGTSTPCTNASSSPSLTQ 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1828382 1829779 + BLOR00133 Blo01g00133 54573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00133 233 ProSiteProfiles LOB domain profile. 23 125 IPR004883 -
Blo01g00133 233 PANTHER LOB DOMAIN CONTAINING PROTEIN 2 218 - -
Blo01g00133 233 MobiDBLite consensus disorder prediction 129 147 - -
Blo01g00133 233 MobiDBLite consensus disorder prediction 1 15 - -
Blo01g00133 233 MobiDBLite consensus disorder prediction 214 233 - -
Blo01g00133 233 Coils Coil 104 124 - -
Blo01g00133 233 MobiDBLite consensus disorder prediction 1 21 - -
Blo01g00133 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 2 218 - -
Blo01g00133 233 MobiDBLite consensus disorder prediction 182 203 - -
Blo01g00133 233 MobiDBLite consensus disorder prediction 129 150 - -
Blo01g00133 233 MobiDBLite consensus disorder prediction 216 233 - -
Blo01g00133 233 Pfam Lateral organ boundaries (LOB) domain 24 122 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00133 Blo-Chr1:1828382 Blo12g00316 Blo-Chr12:18573057 8.04E-104 dispersed
Blo01g00132 Blo-Chr1:1819924 Blo01g00133 Blo-Chr1:1828382 2.46E-63 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11806 PF03195 LOB 5.40E-39 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00133 K21994 - pvy:116128124 301.597