Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00140 ATGGGTAGAGGAAGAGTGGAGCTTAAGAGGATAGAGAACAAAATCAATCGCCAGGTTACTTTCTCGAAGAGGAGAAATGGGTTGCTCAAGAAAGCTTATGAGCTGTCTGTTCTCTGCGATGCTGAGGTTGCTTTGATCATTTTCTCCAGTCGTGGCAAGCTTTATGAGTTTGGAAGTTCTGGGACCAGTCAAACGCTCGAGAGGTATCAACGGTGCAGCTTCTCCCATCAAGACAACACAGTTGGACGGGAAACACAGAATTGGCATCAAGAAGTAGCAAAGTTGCAAGCTAACTACGAATCCCTACAACGTACACAAAGGCATTTGCTTGGGGAAGATCTTGGACCTCTAAGCGTGAAGCAGCTTCAAAATCTTGAAAACCAGCTTGAAGGAACACTTGCACAAGCCAGGCAAAGAAAGGAACGTCAGCTTGGAGATATCAACAACCAACTTAAGATTAAGCTCCAAGCAGAAGGGCAAGTACAGAATTTCAAAGCCTTCCAAAGCCTGTGGAGTTCATCTAGTGGAGGAGGAAATGGCCATGGAAACTTTGGTTTGGAGCTTTCTCAAACCAACCCTTTGGACTACCACAGCCACCCTGAGCATGTTGTACAAATTGGGTATCATGATTATGTTCAAGGAGAGGGATCATCCATTCCAAGGAGCATGGCTTGTGAGACAAACTTCATTCAAGGCTGGATCCTATGA 708 45.34 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSSGTSQTLERYQRCSFSHQDNTVGRETQNWHQEVAKLQANYESLQRTQRHLLGEDLGPLSVKQLQNLENQLEGTLAQARQRKERQLGDINNQLKIKLQAEGQVQNFKAFQSLWSSSSGGGNGHGNFGLELSQTNPLDYHSHPEHVVQIGYHDYVQGEGSSIPRSMACETNFIQGWIL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1906764 1917771 + BLOR00140 Blo01g00140 54580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00140 235 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Blo01g00140 235 PANTHER MADS-BOX TRANSCRIPTION FACTOR 6 1 164 - -
Blo01g00140 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo01g00140 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo01g00140 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo01g00140 235 ProSiteProfiles K-box domain profile. 85 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo01g00140 235 Coils Coil 119 142 - -
Blo01g00140 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Blo01g00140 235 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Blo01g00140 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo01g00140 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Blo01g00140 235 Pfam K-box region 84 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo01g00140 235 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Blo01g00140 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 164 - -
Blo01g00140 235 Coils Coil 85 112 - -
Blo01g00140 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00140 Blo-Chr1:1906764 Blo18g00414 Blo-Chr18:4509735 1.70E-61 dispersed
Blo11g00613 Blo-Chr11:6178317 Blo01g00140 Blo-Chr1:1906764 1.24E-25 dispersed
Blo14g00862 Blo-Chr14:31760301 Blo01g00140 Blo-Chr1:1906764 1.02E-39 dispersed
Blo19g00299 Blo-Chr19:19015024 Blo01g00140 Blo-Chr1:1906764 2.91E-37 dispersed
Blo01g00140 Blo-Chr1:1906764 Blo17g00396 Blo-Chr17:4438325 3.05E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11807 PF01486 K-box 6.50E-20 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00140 K09264 - cpap:110823775 331.257