Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00156 ATGTACCATTTATTTGATATCCGTAAGAGTCTCTACATTTTAAGTCCCCACTTCTCACTGTTTCTATACTTTGCAGAGGCAGCTAGCAGCGGGACAGTTGCTTCTTCATCGTTGGAGAAACTTATACCAGCTGAACAAAAGTCATTGAAGTCCGGAGACCATCGTGATTCTTTTTTCTTACAAGACCAGAAAGTGGAGCTCATCTCTAATAAACAATCAGTTGGAGTGGAGAAAAAAAGCAGTCATTCCGCTAATTTGTTAAAGACTGTGGACTGTGATATAGGGACACAATCTTTACGGCCTTCTTATCTTGCACAAAGGAACGAAGTTAATGTGATGGGTGCTCAGTATGAGAGTAGCCTCTTCTCCAGCTCATTATCAGAATTATTTACTAAGAGGATGACATTATCATCAAATAATGCTCTTTATGGCCATTCTGTTGATACTATTGCCTCACACTATGAGGAAGAGGAACCTTTAGAATCTCTTGAAGAACTGGAAGCCCAAACCATTGGGAACCTCCTCCCTGATGATGAGGACTTGCTTTCTGGATTGACTGATGGGCTTGACTACGTCCTCCAACAAAATGGAGGGGAAGATGCTGAAGATTTGGACTTCTTTAGTAATGTTGGAGGGATGGATTTGGGAGATGAAGATTTATCTATGGGGTTAAAAAATTCTGAATTTTATGGAGTTTCTCATGGTCAGCATGGGACGAGTAATGGTTCAATCGGTGGAGAACACCCTTTAGGTGAACATCCTTCTAGGACATTGTTTGTGAGAAATATAAATAGCAATGTCGAAGATTCTGAGTTGAGAGCCCTCTTTGAGCAATATGGAGATATTCACACTCTTTATACAGCCTGCAAACATCGTGGTTTTGTTATGATCTCCTATTACGATATTAGAGGAGCTCGAAATGCCATGAAAGCCCTTCAGAACAAACCACTTAGGAGAAGGAAGCTCGATATACACTTTTCAATTCCAAAGGACAACCCTTCTGAAAAAGATATTAATCATGGTTCTTTTGTTGTTTTGAACCTTGATTCTAAAATCTCAAATGATGAACTTTTTCAGATCTTTGGAACCTATGGAGATGTCAAGGAGGTCAAAGAAGTTTCACACAGAAGCAGCCACAAAATTATTGAATTTTATGATATAAGAGCTGCGGAGGCTGCTGCACGAGCATTAAATTGGAGTGATATATTAGGCAAGCAAATTAAGCTAGAGCCAAACCATCCTGTTGGTGGAAGATGGAGTCTGGCACAACAGTTCCATCCAGAGTTGGAGAAAGAGGATCTTAGTTCTTATCTGCAGCAAAGTAGTTCTCCTATGAACTGTGCTATTGGTTTATCTGGCTTAAATTCAAAAGGAAGTAATATATGTAGCAGTGTGGATAATGGATCGCTTTTGGGATTACACTCTGCATTGCAGCTCCAATCTCTGGAAACTGTATCAAACAATGGAATATCTTCTAGTGTTCCCATTAATTTATCCTCCCAAATGAGAGCTGAATCAATTGGCAATAAATCTGCATTTGTTGATTCTGGTCATTCACCCAGCCTATTAAAATTTCAAGCTGCTCCAGCCTTTCATCCTCATTCTCTTCCTGAATATCATGATGGTTTGCATGGTCGTGTCCATTTCAATACGCATGGACTCATGGCTGGAAATATTAGTCTCCAGCCTCTAGAATCACTAGATAGCCACCAACAGCGTGGGATAAGCTCAAATGGGAATTCCATAGCACTCAGTGAAGCATTTGGATCTGGTGGTAAAAGGAACTGTTCTCTTCCTGGACACAAGTATACATGGGGCAACTCATACCATCCTCATCCTCCTGGCATGGTGTGGCCAAACTCTCCATCATATGTCAATGGAATTTGCACAGGTCATCCCCCATCCCAGCTTCAGGGTGTTCCTAGAGCACCGGCTCATATGATACCTGCTGTATTGCCTATTAATAACCACCATGTGGGATCTGCCCCATCTGTTAATCCTTCTTTCTGGGATAGGCATCACCCTTACGTAGTGGAATCACCTGAGTTTTCTGGTTTTCTTCCTGGTTCTCTTGGGACCAGAAAGGTTTCTAATGACTCGGCACATTCTATAGATTTTGTTTCTCACATTTTTGCTCAAGCTGGTGGAAGTTGCATAGACCTGACCATTCCCGAAAGAAATGTCGGACTTCAACCTCATCATCAGAGGTGCATGATCTTTCCGGGAAGAAACCAAATACTTCCATCAATGAGTTCATTTGATTACCCAAGTGAACGGTCTAGAAGCCGTAGAAATGAAGGTTTCTCAAATCAGGTGGAGAACAAAAAGCAGTATGAACTAGATATTGACCGCATAAGGCTAGGAGAAGATATTCGGACAACACTAATGATAAAGAACATACCTAACAAATATACTTCAAAGATGCTTTTGGCTGCAATTGATGAGCGGCACCGAGGAGCTTATGATTTCATTTATCTACCTATTGATTTTAAGTCACAGAACAAATGTAACGTTGGATATGCATTCATCAACATGATTGATCCATCCTTCATCATTCCATTCCACGAGACCATTAATGGTAAAAAATGGGAGAAGTTCAATAGTGAAAAGGTGGCTTCCCTGGCTTATGCTCGTATACAAGGCAAACCTGCTCTTGTTGCTCATTTCCAAAATTCTAGCTTAATGAATGAAGATAAGCGATGTCGGCCAATTCTCTTCAATACTGAAGGACCAAATGCAGGTGACCAGGTTCCCTTTCCAATGGGGGTTAATGTACGAACTAGACCAGGAAAAGCAAGAGGCAACACATGTGAGGAAAGCCATTCAGATAGTGCGTTTGACTCCATCAATGGCGATGATTGTTTTATTGAAGACTCGCCTTTTGGCTCAGCAAAAGTTTCAGACCCAGCTCCGTAG 2916 41.19 MYHLFDIRKSLYILSPHFSLFLYFAEAASSGTVASSSLEKLIPAEQKSLKSGDHRDSFFLQDQKVELISNKQSVGVEKKSSHSANLLKTVDCDIGTQSLRPSYLAQRNEVNVMGAQYESSLFSSSLSELFTKRMTLSSNNALYGHSVDTIASHYEEEEPLESLEELEAQTIGNLLPDDEDLLSGLTDGLDYVLQQNGGEDAEDLDFFSNVGGMDLGDEDLSMGLKNSEFYGVSHGQHGTSNGSIGGEHPLGEHPSRTLFVRNINSNVEDSELRALFEQYGDIHTLYTACKHRGFVMISYYDIRGARNAMKALQNKPLRRRKLDIHFSIPKDNPSEKDINHGSFVVLNLDSKISNDELFQIFGTYGDVKEVKEVSHRSSHKIIEFYDIRAAEAAARALNWSDILGKQIKLEPNHPVGGRWSLAQQFHPELEKEDLSSYLQQSSSPMNCAIGLSGLNSKGSNICSSVDNGSLLGLHSALQLQSLETVSNNGISSSVPINLSSQMRAESIGNKSAFVDSGHSPSLLKFQAAPAFHPHSLPEYHDGLHGRVHFNTHGLMAGNISLQPLESLDSHQQRGISSNGNSIALSEAFGSGGKRNCSLPGHKYTWGNSYHPHPPGMVWPNSPSYVNGICTGHPPSQLQGVPRAPAHMIPAVLPINNHHVGSAPSVNPSFWDRHHPYVVESPEFSGFLPGSLGTRKVSNDSAHSIDFVSHIFAQAGGSCIDLTIPERNVGLQPHHQRCMIFPGRNQILPSMSSFDYPSERSRSRRNEGFSNQVENKKQYELDIDRIRLGEDIRTTLMIKNIPNKYTSKMLLAAIDERHRGAYDFIYLPIDFKSQNKCNVGYAFINMIDPSFIIPFHETINGKKWEKFNSEKVASLAYARIQGKPALVAHFQNSSLMNEDKRCRPILFNTEGPNAGDQVPFPMGVNVRTRPGKARGNTCEESHSDSAFDSINGDDCFIEDSPFGSAKVSDPAP 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2129098 2135884 + BLOR00156 Blo01g00156 54596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00156 971 Gene3D - 247 340 IPR012677 -
Blo01g00156 971 SUPERFAMILY RNA-binding domain, RBD 253 410 IPR035979 GO:0003676
Blo01g00156 971 MobiDBLite consensus disorder prediction 930 951 - -
Blo01g00156 971 CDD RRM3_MEI2_like 795 882 IPR034454 -
Blo01g00156 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 329 IPR000504 GO:0003723
Blo01g00156 971 CDD RRM1_MEI2_like 255 331 IPR034453 -
Blo01g00156 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 258 322 IPR000504 GO:0003723
Blo01g00156 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 408 IPR000504 GO:0003723
Blo01g00156 971 Gene3D - 341 437 IPR012677 -
Blo01g00156 971 MobiDBLite consensus disorder prediction 751 770 - -
Blo01g00156 971 PANTHER RNA RECOGNITION MOTIF-CONTAINING 30 955 - -
Blo01g00156 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 341 414 IPR000504 GO:0003723
Blo01g00156 971 PANTHER PROTEIN MEI2-LIKE 4 30 955 - -
Blo01g00156 971 Pfam RNA recognition motif 2 792 890 IPR007201 -
Blo01g00156 971 SMART rrm1_1 342 410 IPR000504 GO:0003723
Blo01g00156 971 SMART rrm1_1 257 325 IPR000504 GO:0003723
Blo01g00156 971 SUPERFAMILY RNA-binding domain, RBD 794 880 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00156 - - - mcha:111017453 1206.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00156 Blo-Chr1:2129098 Blo04g01228 Blo-Chr4:23612324 0 dispersed
Blo01g00156 Blo-Chr1:2129098 Blo12g00264 Blo-Chr12:16012748 1.55E-11 wgd
Blo01g00156 Blo-Chr1:2129098 Blo12g00293 Blo-Chr12:17299640 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1348 Blo01g00156 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00157 Cam06g0059 Cec06g0173 Cco06g0168 Clacu06g0167 Cmu06g0163 Cre06g0939 Cone14ag0649 Cone15ag0659 . . . . Chy11g01832 Cme11g02368 . . . . . . . . Sed09g0339 . . . . . . Cpe17g00944 . Bhi12g02387 Tan06g1439 Cmetu11g1451 . Hepe03g1175 . . . . . . . . . Lsi09g01769 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003734 3 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00156 Blo_Chr01 FPKM 30.839777 32.815952 33.157269 33.018314 24.769062 29.310091 24.616411 44.503788 44.330391 43.325535