Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00158 ATGGTTTTCCCCCGGGAATCTTCGCCGGAGTATGAAGGCATCGAAGAAGCCCATTATGCATATAGAGTTCGTGATCGGCTGAGAAAGGAAGTACTCGTTCCTCTCAGAAAGGCATTACAGTTGCCGGAGGTCTACATGGGAGCAAAAAGATGGCATAGAATTCCGTACAATAGGGTGGCCTCAGTAGCCATGACGAACTACAAGAAAAACTTTGTGAAGCACGACAAAGAGCGGTTCACCGATTACTTAGAAAACGTGGATGCCGGAAAGGCGAAGATTTCAGCAGGGGCATTACTTCCCCACGAGATCATAAAATCAATGGAGGAGTTAGACGGCGACAAAGTTGCAGAGCTCCAATGGCGGAGGATGGTCGAAGACTTGTTGAAGGAAGGCAAAATGAGGAACTGCATATCGGTATGTGATGTCATCACTTTCAGCGAAAGCCCTACGCTTCATATAATCCAAGGCAATTCTCTGAAAGAGAAGGTAGAGTCTGTTGAGGGAATGGATGATTGGGGGTGCAACACTGATTTCCAGAAGGTTTTTGATCTTATCCTAAAAGTAGCAGTAGACGGTGGATTAAAGAATGAAGAGATGATCAAAAGGATTTTCGTATTTAGCGACATGGAATTCGACGATGCACGAGGAGAGATTGAGGAGGAGAACAATGATTGGGAGACTGATTACCAAGTGATAGAGAGAAAGTTTAGGGAAAAAGGGTACACGGCGGTGCCGGAGATAGTGTTTTGGAATTTGAGACACTCGAGGGCGACGCCGGTGCCGGCGAGGCAGAAAGGGGTGGCGTTGGTGAGTGGGTTTTCTAAGAACATGGTGAAGCTTTTCTTGAACAACGACGGCATTGTCAGCCCTGAGCATGTTATGGAGGCAGCCATTTCTGGGGAAGAGTACCAGAAACTAGTTGTTTTGGATTGA 933 46.73 MVFPRESSPEYEGIEEAHYAYRVRDRLRKEVLVPLRKALQLPEVYMGAKRWHRIPYNRVASVAMTNYKKNFVKHDKERFTDYLENVDAGKAKISAGALLPHEIIKSMEELDGDKVAELQWRRMVEDLLKEGKMRNCISVCDVITFSESPTLHIIQGNSLKEKVESVEGMDDWGCNTDFQKVFDLILKVAVDGGLKNEEMIKRIFVFSDMEFDDARGEIEEENNDWETDYQVIERKFREKGYTAVPEIVFWNLRHSRATPVPARQKGVALVSGFSKNMVKLFLNNDGIVSPEHVMEAAISGEEYQKLVVLD 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2144259 2145345 - BLOR00158 Blo01g00158 54598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00158 310 Pfam Domain of unknown function (DUF2828) 2 142 IPR011205 -
Blo01g00158 310 Pfam Domain of unknown function (DUF2828) 142 292 IPR011205 -
Blo01g00158 310 Coils Coil 215 235 - -
Blo01g00158 310 PANTHER OS06G0652100 PROTEIN 2 310 IPR011205 -
Blo01g00158 310 PIRSF T31B5_30_vWA 1 143 IPR011205 -
Blo01g00158 310 PIRSF T31B5_30_vWA 141 310 IPR011205 -
Blo01g00158 310 Gene3D von Willebrand factor, type A domain 133 284 IPR036465 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00158 - - - mesc:110623102 441.039
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00158 Blo-Chr1:2144259 Blo01g00339 Blo-Chr1:4041058 2.69E-149 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1333 Blo01g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0659 Cone15ag0670 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033744 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00158 Blo_Chr01 FPKM 15.350274 16.570282 18.285397 20.248497 14.54387 13.384994 15.110693 24.82131 22.587528 26.055168