Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00162 ATGGTGCCACGCTGCGTGCGTCTCAAAATTGTCGCTTCTCTTCGTTTGCTCCGATTTTATCAAACTCGATTGGCTTGTTTTGAGTCTCCCGAAGGTGAAGAGAAGACTGATCTCCGAAGGATCTCCTCTCCGAATCGATCTCCTCTCCGAAGGCGAAGCGATCTTGTTGCGAGGCGAGCTACCACCCGACGCGAAGCGAGCTGCATCCCGAAGCGAGGCGAGCTCCGACCTCCCACTGTGAACCGAGGCGAGGTGCGACCTACCGCTGCGAACCGAGCTCTGACTACTAAACGAGTTGGGCGACGTCTGATTGCGAATCGACCTCCGACTGAGCTGGGCGACCTCCGACTGAGCTGTGTGAACTCAAAATCTTCATTCAGTTCGGCGATGGCCGATGGGTTGCCGGTCTCGGGTCTACCGTTAGTTCTAGGGAAGACAGAGATGTTTATTTTCTTGTTTTCGTCATTTTTGAAAGCTCAAGTGCTTGAGAGCAAGATGTGGGGAGTTATGAGGCAGAATTTTGGATCTAGAGCCTCATCTGCCATGAATTTTCGGCCTGCGTCATCAGCATGGAGAAGTTATTCATCTTCGGGTAAAGAGATGACAGTGAGGGAAGCTCTTAACTCTGCACTTGATGAGGAAATGTCTGCTGACTCCAAAGTCTGTTTGATCGGTGAAGAAGTGAGAAAGATCGAATCAGTTGGGGAATACCAAGGGGCTTATAAGATATCCAAAGGACTTTTGGAAAAATATGGCCCTGAGAGGGTTCTTGACACTCCTATTACTGAGGCTGGTTTTGCTGGAATTGGTGTTGGTGCTGCTTTTTATGGTTTGAAGCCCGTTGTTGAATTCATGACATTTAACTTTTCTATGCAGGCAATTGATCACATCATCAATTCTGCTGCAAAATCAAACTATATGTCTGCTGGTCAAATTTCTGTGCCTATTGTGTTCAGAGGACCTAATGGTGCTGCTGCTGGAGTTGGTGCCCAGCATTCGCAGTGTTATGCTGCATGGTTTGGTTCTTGTCCTGGGTTGAAAGTTTTGGCGCCATACTCATCTGAAGATGCCAGAGGACTGTTAAAAGCTGCCATCAGGGATCCAGATCCTGTTGTTTTTCTCGAAAATGAGTTAATGTATGGTGAATCATTCCCTGTTTCAGCTGAAGCTCTGGATTCGAGCTTCACCCTTCCCATAGGAAAAGCTAAGATTGAGAGGGAAGGGAAGGATGTAACGATTACAGCTTTTTCAAAATTGGTTGGTGTTGCACTCAAGGCTGCTGAAATACTTGCTAAGGAAGGAGTCAGTGCTGAAGTTATAAATTTGCGCACTATTCGACCATTGGATAGATCGACGATCAACGCTTCAGTGAGGAAGACTAACAGGCTGGTAACGGTTGAAGAAGGATTTCCCCAGCATGGAGTTGGTGCTGAGATATGCACGTCAGTTATTGAGGATAGCTTTAGCTATCTTGATGCGCCAGTTGAGAGGGTTGCAGGAGCTGATGTTCCCATGCCTTATGCGGCCAATCTTGAGAGATTGGCTGTTCCACAGGTAGAAGATATTGTCCGGGCGGCAAAGCGGGCCTGCTACAGAGTTGTACCTTTGGCTGCGACTGGTTAA 1623 47.81 MVPRCVRLKIVASLRLLRFYQTRLACFESPEGEEKTDLRRISSPNRSPLRRRSDLVARRATTRREASCIPKRGELRPPTVNRGEVRPTAANRALTTKRVGRRLIANRPPTELGDLRLSCVNSKSSFSSAMADGLPVSGLPLVLGKTEMFIFLFSSFLKAQVLESKMWGVMRQNFGSRASSAMNFRPASSAWRSYSSSGKEMTVREALNSALDEEMSADSKVCLIGEEVRKIESVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFAGIGVGAAFYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWFGSCPGLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELMYGESFPVSAEALDSSFTLPIGKAKIEREGKDVTITAFSKLVGVALKAAEILAKEGVSAEVINLRTIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICTSVIEDSFSYLDAPVERVAGADVPMPYAANLERLAVPQVEDIVRAAKRACYRVVPLAATG 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2174932 2183967 - BLOR00162 Blo01g00162 54602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00162 540 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 198 410 IPR029061 -
Blo01g00162 540 SMART Transket_pyr_3 201 382 IPR005475 -
Blo01g00162 540 Pfam Transketolase, pyrimidine binding domain 200 381 IPR005475 -
Blo01g00162 540 Gene3D - 200 398 - -
Blo01g00162 540 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA, MITOCHONDRIAL 179 535 - -
Blo01g00162 540 PANTHER DEHYDROGENASE RELATED 179 535 IPR027110 GO:0004739|GO:0006086
Blo01g00162 540 Gene3D - 399 531 IPR009014 GO:0003824
Blo01g00162 540 SUPERFAMILY TK C-terminal domain-like 396 529 IPR009014 GO:0003824
Blo01g00162 540 Pfam Transketolase, C-terminal domain 400 522 IPR033248 -
Blo01g00162 540 CDD TPP_PYR_E1-PDHc-beta_like 205 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00162 K00162 PDHB, pdhB; pyruvate dehydrogenase E1 component beta subunit [EC:1.2.4.1] - csv:101220981 626.706
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00162 Blo12g00290 CCT
Blo01g00162 Blo12g00290 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00162 Blo-Chr1:2174932 Blo03g01401 Blo-Chr3:40513876 9.16E-36 dispersed
Blo01g00933 Blo-Chr1:21840480 Blo01g00162 Blo-Chr1:2174932 8.38E-84 transposed
Blo02g00573 Blo-Chr2:10568613 Blo01g00162 Blo-Chr1:2174932 2.86E-06 transposed
Blo07g00010 Blo-Chr7:231696 Blo01g00162 Blo-Chr1:2174932 0 transposed
Blo17g00027 Blo-Chr17:158166 Blo01g00162 Blo-Chr1:2174932 2.55E-10 transposed
Blo01g00162 Blo-Chr1:2174932 Blo12g00290 Blo-Chr12:17128144 1.01E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1321 Blo01g00162 . . Bda11g00379 . . . . . . . . . . . . . . . . . . . . Cla06g00168 Cam06g0044 Cec06g0188 Cco06g0181 Clacu06g0183 Cmu06g0178 Cre06g0951 . . . . . . Chy11g01820 Cme11g02354 . Blo12g00290 . Bda11g00379 . . . . Sed07g0124 . . . . . . Cpe17g00933 . Bhi12g02405 Tan06g1460 . . . . . . . . . . . . Lsi09g01756 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003819 3 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 2 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00162 Blo_Chr01 FPKM 12.505208 14.856891 4.347802 5.707881 6.715318 6.638803 7.363083 4.063706 3.853137 3.051771