Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00178 ATGGAATGCAATAAAGATGAGGCCTCTCGTGCAAAAGAGATTGCAGAGAAAAAGTTTACTGCCAAGGACATAGTGAGTGCCAAAAAATTTGCATTGAAGGCTCAAAATTTGTATCCAGCACTTGAGGGTATAAGCCAAATGTTGGCAACCCTTGATGTTTATCTCTCTGCGGAGAAAAAAATAAATGGGGAAGCTGATTGGTACAGTATACTTAGTGTAGATCCACGAGCAGATGAGGATACTATAAGGAAACATTTTAGGAAGCTTGCTCTGCTGCTTCACCCTGACAAGAACAAGTCCATTGGAGCTGATGGGGCATTTAAACTTATTTCTGAGGCATGGAGTTTATTGTCTGATAAAGCTAAAAGGCTAGCATATGATTCCAAGAGTAAAGCAACGATTTACCGGAAAGTCTCAACTTCATCTGGGAGTTCATCTGGAAAATCACGGGTTAATGGTTTTAACCATTTTACGAAAAGTACAACAACAAATGTGAAGACCCAAAAAAGCACCATTCAATCAGGACCAACTTCAACTATTGCATCCCAGAAAGTGAAACATAGTACATTTTGGACCGTGTGCTATGGTTGCAAGATACAATATGAATATCCAAGAGCTTATCTTAATCATAATCTCCTGTGTCCCAGTTGCAACAAAACATTTTCTGCAGTAGAAATGCCACCTCCTATTGCTTCTAAGCCGACACCATTAAAAATTTCACAGCAAAAGAAGAACTTGAATAATCGAGCAGCTGATAAAGATTCAGTTAATCGAGTCAGGAACACAACAAAATCCTATAAGTCTGGTTCATATGACCAAAGCACTTTTAGGTGGAATCCATTCTCCAAATCTTCTAGTGCATCGCCTGCTGCTCAATCTGTGAGTATGGTTCAGCAGGTGGATGAGAAGGAGAGAGAGGAGGGTCAGAAAATAGAGGAGGCTTGGCTAAGAAAGCACCATGCCTCTAAGGAGACCAGTGATATTTCATTGAAAGGATTCTCTCCTCTCTCAAACAGAAAAAGAGGAATTAACGACATTTCTACCTCTGTTTGCGACAATGGAGGAACTTCAGCTATGGAAATTGAGACTCAAGCAGCAAATTCTTCTGGTTTTTTGCAAGGTACGGCCACCAAAAACAAGATTAATGCATCAACTAATCCAAGTGGCATCGATGACGTCCCGAACTTACTGATGAAAAAGGCTCGACAAGAGATCAAGAAGAAACTGAAGGAATGGATGTCAGCTGCTGCAGCTACAACAGCAACCAAAGAGTGGAACAGGAGTATAAATTTGAATGATAAGAAAGACAAAATTCTGGAACACAGTGACTCAAACAATCATAACATTCTGGATCTCAAGAATGGAAACGTTGCCAGGGAAACCTTTTTTGAATCTTCTGGTGTCAATGGAGATGCAAAAATTTTGGAACCAAAGTCAATTGATGTTCCTGATTCAGATTTTCATGATTTTGACAAGGACAGAACTGAAAATTGTTTTAGAGAAAACCAAGTGTGGGCTGCATATGATGATGACGATGGGATGCCTCGATACTATGCAATGATTCATAAAGTCAAATCTTTGAATCCATTCAGAATGCAGATGAGTTGGCTTAACTCAAAATCTAACAGTGAGTTTGGCCCACTTAATTGGGTTAGCTCTGGTTTTCCAAAAACATGTGGGGATTTCAGATTAGGTAAATATGAGATCTATAGATTCCTTAATTCTTTTTCCCACAAGGTTACGTGGACAAAAGGTGCAAGGGGAGCCATACAAATATATCCTATGAAGGGAGATGTTTGGGCGCTTTATAAAAACTGGTCGCCTGATTGGAATGAGCTGATAGCAGATGAAGTTATACATAGTTATGAAATGGTGGAAGTTCTTGAGGACTACAATGAAGAAATAGGCGTAACTATTATTCCTCTCGAGAAAGTTGCTGGTTTCAGGACTGTGTTTCGTCGGTGCTTGGAGCCCACCAAAATGAGGATTCCAAGAGAGGAAATGTTCCGATTTTCGCATTCTATCCCATCATACTTGCTAACAGGCAAAGAAGCTTCCAATGCCCCAAAGGGCTGCCGAGAGCTGGACCCAGCTGCTGCTTCCCTGGATGTTGTTCAAGGCACAGCAGAGCCTAAGGAAATAGACGATGTTGGCAGTGAGCACTTCAAGGAGGAAAGGACGGATAACAAATTTGGAAACGTTAGCAGTCAACAAAGTAACAATTTTTGA 2229 40.56 MECNKDEASRAKEIAEKKFTAKDIVSAKKFALKAQNLYPALEGISQMLATLDVYLSAEKKINGEADWYSILSVDPRADEDTIRKHFRKLALLLHPDKNKSIGADGAFKLISEAWSLLSDKAKRLAYDSKSKATIYRKVSTSSGSSSGKSRVNGFNHFTKSTTTNVKTQKSTIQSGPTSTIASQKVKHSTFWTVCYGCKIQYEYPRAYLNHNLLCPSCNKTFSAVEMPPPIASKPTPLKISQQKKNLNNRAADKDSVNRVRNTTKSYKSGSYDQSTFRWNPFSKSSSASPAAQSVSMVQQVDEKEREEGQKIEEAWLRKHHASKETSDISLKGFSPLSNRKRGINDISTSVCDNGGTSAMEIETQAANSSGFLQGTATKNKINASTNPSGIDDVPNLLMKKARQEIKKKLKEWMSAAAATTATKEWNRSINLNDKKDKILEHSDSNNHNILDLKNGNVARETFFESSGVNGDAKILEPKSIDVPDSDFHDFDKDRTENCFRENQVWAAYDDDDGMPRYYAMIHKVKSLNPFRMQMSWLNSKSNSEFGPLNWVSSGFPKTCGDFRLGKYEIYRFLNSFSHKVTWTKGARGAIQIYPMKGDVWALYKNWSPDWNELIADEVIHSYEMVEVLEDYNEEIGVTIIPLEKVAGFRTVFRRCLEPTKMRIPREEMFRFSHSIPSYLLTGKEASNAPKGCRELDPAAASLDVVQGTAEPKEIDDVGSEHFKEERTDNKFGNVSSQQSNNF 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2422784 2425012 + BLOR00178 Blo01g00178 54618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00178 742 MobiDBLite consensus disorder prediction 713 730 - -
Blo01g00178 742 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Blo01g00178 742 PANTHER HEAT SHOCK PROTEIN-LIKE 1 722 - -
Blo01g00178 742 Gene3D DnaJ domain 63 174 IPR036869 -
Blo01g00178 742 PRINTS DnaJ domain signature 102 122 IPR001623 -
Blo01g00178 742 PRINTS DnaJ domain signature 68 86 IPR001623 -
Blo01g00178 742 PRINTS DnaJ domain signature 86 101 IPR001623 -
Blo01g00178 742 MobiDBLite consensus disorder prediction 713 742 - -
Blo01g00178 742 MobiDBLite consensus disorder prediction 282 298 - -
Blo01g00178 742 MobiDBLite consensus disorder prediction 282 307 - -
Blo01g00178 742 CDD DnaJ 66 119 IPR001623 -
Blo01g00178 742 SUPERFAMILY Chaperone J-domain 44 126 IPR036869 -
Blo01g00178 742 MobiDBLite consensus disorder prediction 233 255 - -
Blo01g00178 742 Pfam DnaJ domain 66 127 IPR001623 -
Blo01g00178 742 Pfam Domain of unknown function (DUF3444) 477 684 IPR024593 -
Blo01g00178 742 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Blo01g00178 742 PANTHER BNAC03G44070D PROTEIN 1 722 - -
Blo01g00178 742 SMART dnaj_3 65 122 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00178 - - - vvi:104877364 811.216
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00178 Blo02g00192 CCT
Blo01g00178 Blo02g00192 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00178 Blo-Chr1:2422784 Blo07g00019 Blo-Chr7:379657 0 dispersed
Blo13g00191 Blo-Chr13:7783452 Blo01g00178 Blo-Chr1:2422784 3.76E-29 dispersed
Blo01g00178 Blo-Chr1:2422784 Blo15g00093 Blo-Chr15:784984 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1262 Blo01g00178 . . Bda11g00390 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00192 . . Bda11g00390 Bpe14g00793 . . Bma06g01347 . . . . . . . Cpe17g01075 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003895 2 1 3 3 3 1 2 1 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00178 Blo_Chr01 FPKM 2.458895 2.140612 2.049389 2.036805 4.323725 3.708676 3.145718 3.856067 3.83805 3.380066