Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00179 ATGGCTGTAGGTAGATCAGAAAATTATCAGATGTCAGAATCTTGCGAGGCCCCTCCTACAAAGAAACCTCGTAAAGAGCAGAACCGGATCCGGAACAGTGGAAAATTAGGTGACACTGAGCGTACAAAAGAGGTAATGAAACAACATATTTGGAAAGACTTTCCAGAGGATCTCTTTGAAGCTGTCATTGCTAGACTTCCCATTGCTACCATTTTTCGTTTCCGCTCAGTTTGCCAGAAATGGAATACTTTGCTGGTCTCTGAAAGTTTCTCTCAGCAGCACTGCGCTCAAGTCCCTAGATCCATTCCTTGGTTTTACACCATCACTCACTCCAGAAATCTAGAAAATCGTAATTCAGCAGCCATTTATGACCCTTGCGCAACAAAATGGCACTACCCCACCATTTCTTCTCTTCCGACACATCATGCCATATGGCCAGTTGCTTCTGCAGGAGGTCTAGTTTGTTTTGTAGGCAATGGTCATCGAAACTTCTATGTATGCAACCCTCTAACAAGATCTTTCAAAGAATTACCTGCTAGGTCAGTCAAGGTCTGGTCTCGGGCTGCTGTCGGGATGACTACATATGGAGATTCTGCAAGTAGAAGGTACATGATCCTACGGGTTGAGGGTAATGGAGAATATGAAGTTTATGATTCAATGAATAATTCTTGGACCCTTCCCGGAAACTTGCCAGACAACATCAAGCTCCCGTTAGGCTTAAAAAGCCTACCACTAACTGTTTTAATAGACTGTACACTCTACTTCATGCGTTCAGATCCAGATGGGATTGTTTCCTATGATACGAGTTCTGGGATTTGGACGCAACGTGTAATCCCATTCCCACGGGATATGAGTCCTCACTCTCTTGCAGAGTGCAAGGGGCGCCTCATGCTGGTGGGGCTGCTGACGGAAAACTCTGCCACTTTCGTTTGCATATGGGAGCTTCAGACAATGATACTCTCATGGAAGGAGGTGGGCAGAATGCCAGATGAATGGTGCTTGGAGTTTTACGGGAAGCACGTTTGGATGACTTGTTTGGGCCACAAAGGCTTGCTTATGCTGTCACTGAGAGCGCAACAACTGCATCCTTTGGTCACTTATGATGTGTCGAGCGGGGAGTGGGCTAAGATTTCTAGATGTGCGGTTCCTTGTGGAAGAAAGGGGCGGTGGATTGATATTGGCACCGCTTTCTACCCCAGTCTCACTGCCGTGGCTTAG 1218 46.39 MAVGRSENYQMSESCEAPPTKKPRKEQNRIRNSGKLGDTERTKEVMKQHIWKDFPEDLFEAVIARLPIATIFRFRSVCQKWNTLLVSESFSQQHCAQVPRSIPWFYTITHSRNLENRNSAAIYDPCATKWHYPTISSLPTHHAIWPVASAGGLVCFVGNGHRNFYVCNPLTRSFKELPARSVKVWSRAAVGMTTYGDSASRRYMILRVEGNGEYEVYDSMNNSWTLPGNLPDNIKLPLGLKSLPLTVLIDCTLYFMRSDPDGIVSYDTSSGIWTQRVIPFPRDMSPHSLAECKGRLMLVGLLTENSATFVCIWELQTMILSWKEVGRMPDEWCLEFYGKHVWMTCLGHKGLLMLSLRAQQLHPLVTYDVSSGEWAKISRCAVPCGRKGRWIDIGTAFYPSLTAVA 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2437516 2438733 - BLOR00179 Blo01g00179 54619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00179 405 Gene3D - 95 388 IPR015915 GO:0005515
Blo01g00179 405 MobiDBLite consensus disorder prediction 1 41 - -
Blo01g00179 405 PANTHER BNAA07G08860D PROTEIN 20 405 - -
Blo01g00179 405 Pfam F-box domain 51 87 IPR001810 GO:0005515
Blo01g00179 405 PANTHER F-BOX/KELCH-REPEAT PROTEIN 20 405 - -
Blo01g00179 405 MobiDBLite consensus disorder prediction 18 41 - -
Blo01g00179 405 SMART fbox_2 54 94 IPR001810 GO:0005515
Blo01g00179 405 SUPERFAMILY Galactose oxidase, central domain 114 386 IPR011043 -
Blo01g00179 405 Gene3D - 51 90 - -
Blo01g00179 405 SUPERFAMILY F-box domain 43 111 IPR036047 GO:0005515
Blo01g00179 405 ProSiteProfiles F-box domain profile. 48 94 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00179 - - - qsu:112038124 551.206
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00179 Blo12g00276 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00179 Blo-Chr1:2437516 Blo01g01431 Blo-Chr1:53149959 6.18E-30 dispersed
Blo17g00887 Blo-Chr17:29306727 Blo01g00179 Blo-Chr1:2437516 3.69E-14 dispersed
Blo01g00179 Blo-Chr1:2437516 Blo01g00180 Blo-Chr1:2446182 0 tandem
Blo12g00792 Blo-Chr12:26314402 Blo01g00179 Blo-Chr1:2437516 2.14E-13 transposed
Blo01g00179 Blo-Chr1:2437516 Blo12g00276 Blo-Chr12:16557595 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1260 Blo01g00179 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo12g00276 . . . . . . . . . . . . . Cpe17g01076 . Bhi12g02463 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005573 1 3 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00179 Blo_Chr01 FPKM 1.877441 2.164757 1.616943 2.051006 0.226214 0.457766 0.300902 0.0 0.290348 0.0