Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00180 ATGTCAGAATCTTGTGAGGCGCCTCCTACAAAGAAACCTCGTAAAGAGCGGAACCGGAACCGGAACAGGAACCGGAATGGGGGAAAATTAGGGGAAACTAACCATACAAAAGAGGTAGTGGAACAACATATTTGGAAAGACTTTCCAGAGGATCTCTTTGAAGCTGTCATTGCTAGACTTCCCATTGCTACCTTTTTTCGTTTCCGCTCAGTTTGCCAGAAATGGAATACTTTGCTGGACTCTGAAAGTTTTTCTCAGCACTGCGCTCAAGTCCCACGATCCATTCCTTGGTTTTACACCATCCCTCACACTAGCAATCCAGAAAATCGTAATTCAGGAGCCATTTATGACCCTTGTGCAACAAAATGGCATTACCCCACCATTTCTTCTCTTCCGAAAGAGCTATGCATATCGCCAGTTGCTTCTGCAGGAGGTCTAGTTTGTTTTGTAGACAGTGGTCATCGAAACTTCTATGTATGCAACCCTCTAACAACATCTTTCAAAGAATTACCAGCTATGTCACTCCAGGTCTGGTCTCGGGCTGCTGCTGTCGGGATGACTACATATGGAGATTCTGCAAGTAGAAGGTACATGATCCTATTGGTTGAGTGTAATGGAGAATATGAAGTTTATGATTCAATGAATAATTCTTGGACCCGTCCTGGAAACTTGCCAGCCGAAATCAAGCTCCCGATAGGCTTAAACTTCCGAACACAAACTGTTTCAATGGAAGGTAAAATCTACTTCATGCGTTCAGATCCAGATGGGATTGTTTCCTATGATACGAGTTCCAGGGTTTGGAAGCAAAAAGTAATCCCATTCCCACTGGATATGACTGGTCACACTCTTGCAGAGTGCAATGGGCGCCTCATGTTGGTGGGACAGCTGACGGAAAACTCTGCCACGTGCGTGTGCATATGGGAGCTTCAGAAAATGACACTCTTATGGAAGGAGGTGGGCAGAATGCCAGATGAATGGTGCTTGGAGTTTTACGGGAGGCACGTTTGGATGACTTGTTTGGGCAACAAAGGCTTGCTTATGCTGGTACTGAGAGCTCAACGACTGAATCGTTTGGTCACTTATAATGTGTCGAGCGGGAAGTGGGCTAAGGTTTCTCATGGAAGAAAGCGGCAGTGGATTGATCGTGGCACCGCTTTCTACCCCAGTCTCACTGCCGTGGCTTAG 1185 46.08 MSESCEAPPTKKPRKERNRNRNRNRNGGKLGETNHTKEVVEQHIWKDFPEDLFEAVIARLPIATFFRFRSVCQKWNTLLDSESFSQHCAQVPRSIPWFYTIPHTSNPENRNSGAIYDPCATKWHYPTISSLPKELCISPVASAGGLVCFVDSGHRNFYVCNPLTTSFKELPAMSLQVWSRAAAVGMTTYGDSASRRYMILLVECNGEYEVYDSMNNSWTRPGNLPAEIKLPIGLNFRTQTVSMEGKIYFMRSDPDGIVSYDTSSRVWKQKVIPFPLDMTGHTLAECNGRLMLVGQLTENSATCVCIWELQKMTLLWKEVGRMPDEWCLEFYGRHVWMTCLGNKGLLMLVLRAQRLNRLVTYNVSSGKWAKVSHGRKRQWIDRGTAFYPSLTAVA 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2446182 2447366 - BLOR00180 Blo01g00180 54620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00180 394 MobiDBLite consensus disorder prediction 1 35 - -
Blo01g00180 394 Pfam F-box domain 45 84 IPR001810 GO:0005515
Blo01g00180 394 PANTHER BNAA07G08860D PROTEIN 25 394 - -
Blo01g00180 394 Gene3D - 45 84 - -
Blo01g00180 394 Gene3D - 86 380 IPR015915 GO:0005515
Blo01g00180 394 SUPERFAMILY Galactose oxidase, central domain 113 372 IPR011043 -
Blo01g00180 394 SUPERFAMILY F-box domain 39 104 IPR036047 GO:0005515
Blo01g00180 394 PANTHER F-BOX/KELCH-REPEAT PROTEIN 25 394 - -
Blo01g00180 394 SMART fbox_2 48 88 IPR001810 GO:0005515
Blo01g00180 394 TIGRFAM F_box_assoc_1: F-box protein interaction domain 144 323 IPR017451 -
Blo01g00180 394 ProSiteProfiles F-box domain profile. 42 87 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00180 - - - qsu:112038124 553.518
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00180 Blo-Chr1:2446182 Blo12g00276 Blo-Chr12:16557595 0 dispersed
Blo12g00792 Blo-Chr12:26314402 Blo01g00180 Blo-Chr1:2446182 6.79E-14 dispersed
Blo17g00886 Blo-Chr17:29295462 Blo01g00180 Blo-Chr1:2446182 3.69E-16 dispersed
Blo01g00179 Blo-Chr1:2437516 Blo01g00180 Blo-Chr1:2446182 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1219 Blo01g00180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00015 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005573 1 3 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00180 Blo_Chr01 FPKM 0.0 0.0 0.0 0.527662 0.0 1.352558 0.0 0.0 1.058357 1.179338