Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00191 ATGGCTCCTCCGGTAAAATCTTTCAGGCAAGGCCACAAGGATTCTGAAGATTCTGATACGCCGTCGAACAGTCTTTGGGTCGGCAATTTGGCTACGGATGTTACCGATTCGGATTTGATGGCGCTCTTTGCTCGGTACGGCGCCCTTGACAGTGTCATATCATATTCGGCAAGGAGCTACGCATTCGTCTTCTTCAAGCGCGTGGAGGATGCACAAGCGGCGAAGAACGCTCTGCAAGGAGCTGTTGTTCGTGGCATTTCGATCAAGATCGAGTTTGCGAGACCGACGCGATTTGTTCTTATGAGGCGTTCTTTTCAGACAAAACCTTGTCAGAGTTTATGGGTGGGTGGAATTGATCCGGCAGTTTCAAAAGAAGTAATTGAAATTTTTTTTTCCAAGTTTGGTAAAACTGAGGATTTTAAGTTTTCGAGTGATCGAAATACAGCATTTATTGAATATTCTAGATTAGAAGATGCTTCCCAAGCAATTAGAAGTATGAATGGGAAACGACATGGTGGAGAACAAATACATGTTGATTTCCTTCGATCGGATCAGCGGACTGACTTCAGGGATGGACAGTTTCAGGGTCGAAACATGGGACTAGCTGATATTCAGTCGGGTAATAAAAGACAACTGCCTTCTCATTTTGTCGAAGGACCTAGAGGAGAGAGTCAACCCAGTAAAGTTTTGTGGGTTGGATATCCAGCTTCTGTTCAAATTGATGAACAAATGCTCCATAATGCCATGATTTTATTTGGTGAGATTGAGAAGATTAAGAGTTTTCCATCTAGACATTATTCATTTGTGGAATTTAGAAGTGTTGATGAAGCAAGGCGAGCTAAAGAGGGCTTGCAGGGTCGACTTTTTAATGATCCTCGAATTACAATAATGTTTTCAAATAGTGAGCTGGCACCTGGAAAAGAATACTCGGGTGTTTATGGTGGTGCAAAGGGCTCTAGGCCTGAAATTTTTCTCAATGAACGTTTAGATGTTTTGAGTCATAATCATCCATTGGTGTCAAATAATTTTACCGGATTGGTTCCATCTAGTGCCCCCCTAGGACCAAATATGCTGATGAGACCATTTGGTCATGGTAATTTGGAACCACTTCTTCCTGGCCCTGATTTTAATGATTTTCCAGCACCTCATAGTCTTCAGGATGCAAATAGCAAGAGTTTTATGGGTCCAAATTTGAGCAGGTTGTCTCCCTCAACAGGCATTCTTTCATCTCCTGCACCTGGTATTCAATCCTCTATGAAATCCTCAATAAATACATGGGATGTTTTGGACAAAAATCGATTTGAAAGGGATTCTAAAAGGTTAAGGGTGGATGCTACTTCACTCATGGGCGATACTGCTTTTACGTCAAGAAAAATAGACCAGGGTTTGGGATCAGATCAACAATACAGATTTGGACCAATTGCAGAAGGACGTGTTCCTGTTCCTTTTGCGAACGCCACAGGGAGGAACCGCATAAGTCCTGCTGGTGCAAATGTGACCTCAAGTGGACCTGTCCAACCACACCCTGATAATGATTTTGTGTGGCGTGGAATGATTGCAAAGGGAGGAACACCTGTTTGTCATGCTCGGTGTGTCCCCATTGGAAAAGGGATCAGCAGTGAGCTTCCTGAAGTTGTTAACTGCTCTGCCCGAACCGGTTTGGATCAGCTCACTAAACACTATGCTGAAGCTGTTGGATTTGATGTTGTTTTTTTCTTGCCAGATAGTGAAGATGATTTCGCATCTTACACGGAATTCCTGCACTATCTGGGTGGAAAAAACCGTGCTGGTGTTGCGAAGTTTGATAATGGTACTACTTTGTTTTTGGTTCCTCCTTCTGATTTTTTAAGAAAAGTTTTGAAAGTTGGAGGCCCAGAGCGATTATATGGAGTTGTCCTCGTATTTCCACAAGCTCCTAATAGTGAACCCCTGCCACCTCAATTAAATCTACCTATTCCATCTCAGTATATTGAGCGAAAACAAGTTCTATCTGTTCCAGGTGAGTACGATCAAGTCTCGTTGAAAGATGAGCGACTTCCACAGCCTGATTATACTAGAGCTCTTCATGAGAACTCCAAAGCCTCTCCTAAACCATTGTTTTCGTCTGTAAATGAATCACTACCAGTGCAGTCCATGCCCCAAAGCAGTATTGCATCAGTGTCTCAAGCTGGAGTTTCATTAACACCTGAGCTTATTGCCACTTTAGCTTCGTTAATACCTGGGAAGAATCAGTCATCTACAATAGATAGTACTAAACTACCATCAGGATCATCCGCCATCAGACCTTCACTTCCTCCTCCTGGGTTACAAGATCAACAAGTAGCTGTCAATACAGGTCATTCTTTTCCTCAAGTGGGTACTAATGCTAATATACAGGGGCAAAGTTATTTGCAATATAAGTCCTACCCCTCCCTCTCAAGTATGCCTAGCAACCCTGCACAGTTGGTCAATGGAAGTGCCTCAATGCAAGATTCAACTGCCAACCAGTCACAGCAGGTTCCTCTTCCTCCCAGGCCTTTGACTAATTATTCTGCCCCTGAAAGCGGTCAAACTCCTAATGCGCTACTGGCTAATCCTCAGTATCAGCAAGATGTTTCTCGAACTACTCTGGGAGCTTATGGGGCAGTACATGGAGTTGACCACTCCGGGCAAAGTCCATTGGTGATGCAACAATTGACCAACTATACGTCCTTACCTAATCAGGGTCAGAGTGCTAATTATTCACAACCCCAAACCACCACTCAATTAACAGCCGACAGAGTGAACACTGAGCTTCCTAATCAGGTACAACAGATACAATCGGGTGGAACGGGTACTGGGATCCCAGATGTTGAGGTTGACAAGAACCAGAGATATCAATCAACTCTCCAATTTGCAGCTAGCTTATTGCAACAGATCCAGCAGCAACAAGCAGCCCGCAATTCTTGA 2928 43.68 MAPPVKSFRQGHKDSEDSDTPSNSLWVGNLATDVTDSDLMALFARYGALDSVISYSARSYAFVFFKRVEDAQAAKNALQGAVVRGISIKIEFARPTRFVLMRRSFQTKPCQSLWVGGIDPAVSKEVIEIFFSKFGKTEDFKFSSDRNTAFIEYSRLEDASQAIRSMNGKRHGGEQIHVDFLRSDQRTDFRDGQFQGRNMGLADIQSGNKRQLPSHFVEGPRGESQPSKVLWVGYPASVQIDEQMLHNAMILFGEIEKIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSNSELAPGKEYSGVYGGAKGSRPEIFLNERLDVLSHNHPLVSNNFTGLVPSSAPLGPNMLMRPFGHGNLEPLLPGPDFNDFPAPHSLQDANSKSFMGPNLSRLSPSTGILSSPAPGIQSSMKSSINTWDVLDKNRFERDSKRLRVDATSLMGDTAFTSRKIDQGLGSDQQYRFGPIAEGRVPVPFANATGRNRISPAGANVTSSGPVQPHPDNDFVWRGMIAKGGTPVCHARCVPIGKGISSELPEVVNCSARTGLDQLTKHYAEAVGFDVVFFLPDSEDDFASYTEFLHYLGGKNRAGVAKFDNGTTLFLVPPSDFLRKVLKVGGPERLYGVVLVFPQAPNSEPLPPQLNLPIPSQYIERKQVLSVPGEYDQVSLKDERLPQPDYTRALHENSKASPKPLFSSVNESLPVQSMPQSSIASVSQAGVSLTPELIATLASLIPGKNQSSTIDSTKLPSGSSAIRPSLPPPGLQDQQVAVNTGHSFPQVGTNANIQGQSYLQYKSYPSLSSMPSNPAQLVNGSASMQDSTANQSQQVPLPPRPLTNYSAPESGQTPNALLANPQYQQDVSRTTLGAYGAVHGVDHSGQSPLVMQQLTNYTSLPNQGQSANYSQPQTTTQLTADRVNTELPNQVQQIQSGGTGTGIPDVEVDKNQRYQSTLQFAASLLQQIQQQQAARNS 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2582938 2588966 + BLOR00191 Blo01g00191 54631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00191 975 Gene3D - 220 311 IPR012677 -
Blo01g00191 975 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
Blo01g00191 975 Gene3D - 100 212 IPR012677 -
Blo01g00191 975 SUPERFAMILY RNA-binding domain, RBD 106 199 IPR035979 GO:0003676
Blo01g00191 975 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 177 IPR000504 GO:0003723
Blo01g00191 975 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 85 IPR000504 GO:0003723
Blo01g00191 975 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 294 IPR000504 GO:0003723
Blo01g00191 975 Pfam SPOC domain 508 626 IPR012921 -
Blo01g00191 975 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Blo01g00191 975 CDD RRM3_Spen 230 300 - -
Blo01g00191 975 SMART rrm1_1 112 179 IPR000504 GO:0003723
Blo01g00191 975 SMART rrm1_1 24 91 IPR000504 GO:0003723
Blo01g00191 975 SMART rrm1_1 229 297 IPR000504 GO:0003723
Blo01g00191 975 Gene3D - 6 98 IPR012677 -
Blo01g00191 975 CDD RRM3_Spen 25 94 - -
Blo01g00191 975 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 95 IPR000504 GO:0003723
Blo01g00191 975 MobiDBLite consensus disorder prediction 743 772 - -
Blo01g00191 975 CDD RRM3_Spen 113 182 - -
Blo01g00191 975 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 1 972 - -
Blo01g00191 975 MobiDBLite consensus disorder prediction 743 758 - -
Blo01g00191 975 PANTHER RNA RECOGNITION MOTIF-CONTAINING 1 972 - -
Blo01g00191 975 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 183 IPR000504 GO:0003723
Blo01g00191 975 MobiDBLite consensus disorder prediction 1 22 - -
Blo01g00191 975 Coils Coil 949 969 - -
Blo01g00191 975 MobiDBLite consensus disorder prediction 807 854 - -
Blo01g00191 975 SUPERFAMILY RNA-binding domain, RBD 214 301 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00191 - - - zju:107405094 1049.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00191 Blo12g00264 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00191 Blo-Chr1:2582938 Blo17g00873 Blo-Chr17:28792878 2.78E-08 dispersed
Blo15g00404 Blo-Chr15:5763494 Blo01g00191 Blo-Chr1:2582938 6.88E-07 transposed
Blo01g00191 Blo-Chr1:2582938 Blo12g00264 Blo-Chr12:16012748 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00191 Blo_Chr01 FPKM 20.380579 26.307985 16.711113 18.096357 44.318321 39.226391 41.295139 15.924191 16.307816 15.642906