Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00196 ATGTTGCCCGCCAGAGAAGGCCGGGAAACCTGTGAATTGGAGAAGTTCCTCAAACGCGGTATCGGAGGGGTGCCTTTAAGGCAATCGATTCTTGTTTTTTTGGCAACGAGTGAACATTATTATTCTGCTTGGTTGGCACATATCATGGCAGATTCTGGTGAAAATCAGCCGGCAGAACAAGGTATACTAAAGCCATCAAAAAATAAAAACATCAGAAAAAGGATTATTGAAGATGATGAAAATGGTGATTCGAATTCAGAGAGTTCGATACTGCAAAATCAGAGGAAGAACACTAAAACTGAGAGCAAGCTTTACTTTACTACCGGACCCTCCAAGAGTTCAGTGTCTACGGACCCAAATGCAGAACAAGAAAAACCCATATTTCAGTTTGAGTCTTCAAAAGAAATCCAAGTGGAAAATGATAGCAGAGCAACGGCCACACTAGAAACCGAGACTGACTTCTCGAAAGATGCTCGAGCTATCCGAGAAAGAGTTCTTAAACGGGCAGAGGAGGCTTTGAAGGGTAAAAGCAAGAGTTCTGGGGATGAGAAGCTTTACAAAGGCATCCATGGCTACACAGACTACAAAGCCGGATTCCGAAGGGAGCAAACAGTTGCCAGTGAGAAAGCTGGTGGGTCACATGGACCGCTTAGAGCTTCTGCTCACATAAGAGCTTCAGCCAGATTTGATTATCAACCTGACATTTGCAAGGATTACAAAGAGACTGGCTACTGTGGATATGGAGATTCGTGTAAGTTTATGCATGATCGTGGGGATTACAAATCTGGGTGGCAAATGGAGAAGGAATGGGAAGAAGCAGAGAAAGCAAGGAAGAGAAGTCTTGCTAAGGGATTGGATGATGGAGGGGATGAAGCCACTGGCCAAAGCGATGAAGAAGAAGAAGATGCTCTGCCCTTTGCTTGTTTTATTTGTCGGCAGCAATTTGTAGATCCTGTTGTAACAAAGTGCAAACACTATTTCTGCGAGCATTGTGCATTAAAGCACCACACGAAAAACAAGAAGTGCTTTGTTTGCAACCAGCCTACACTTGGGATATTCAATACAGCCCAAGAAATAAGGAAAAAGATGGCTGCCGTAGGCGGTAACTTTTGCGAGTCATTTCTCTTTTCGTTCTTCGTATTTTCTTAG 1149 43.6 MLPAREGRETCELEKFLKRGIGGVPLRQSILVFLATSEHYYSAWLAHIMADSGENQPAEQGILKPSKNKNIRKRIIEDDENGDSNSESSILQNQRKNTKTESKLYFTTGPSKSSVSTDPNAEQEKPIFQFESSKEIQVENDSRATATLETETDFSKDARAIRERVLKRAEEALKGKSKSSGDEKLYKGIHGYTDYKAGFRREQTVASEKAGGSHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRSLAKGLDDGGDEATGQSDEEEEDALPFACFICRQQFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTLGIFNTAQEIRKKMAAVGGNFCESFLFSFFVFS 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2616666 2618922 - BLOR00196 Blo01g00196 54636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00196 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 231 256 IPR000571 GO:0046872
Blo01g00196 382 SMART ring_2 308 345 IPR001841 -
Blo01g00196 382 CDD RING-HC_RNF113A_B 306 346 - -
Blo01g00196 382 SUPERFAMILY CCCH zinc finger 229 261 IPR036855 GO:0046872
Blo01g00196 382 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 49 365 - -
Blo01g00196 382 SMART c3hfinal6 230 257 IPR000571 GO:0046872
Blo01g00196 382 Gene3D - 228 262 - -
Blo01g00196 382 ProSiteProfiles Zinc finger RING-type profile. 308 346 IPR001841 -
Blo01g00196 382 PANTHER ZINC FINGER PROTEIN 183 49 365 IPR039971 -
Blo01g00196 382 MobiDBLite consensus disorder prediction 76 123 - -
Blo01g00196 382 ProSiteProfiles Zinc finger C3H1-type profile. 230 258 IPR000571 GO:0046872
Blo01g00196 382 Pfam Zinc finger, C3HC4 type (RING finger) 307 349 - -
Blo01g00196 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 365 IPR013083 -
Blo01g00196 382 ProSitePatterns Zinc finger RING-type signature. 323 332 IPR017907 -
Blo01g00196 382 SUPERFAMILY RING/U-box 307 352 - -
Blo01g00196 382 MobiDBLite consensus disorder prediction 85 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00196 Blo-Chr1:2616666 Blo12g00262 Blo-Chr12:15969255 6.99E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11811 PF13920 zf-C3HC4_3 5.70E-09 CL0229 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00196 K13127 - csv:101221334 517.694