Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00201 ATGCATGACAACTTTCCATCTTTCTCGAGCAAGTGTGAATATCGTTATAACACTTTATTTGAAACGTCATTTTACCTTGCATCCATCAACCGATGCTTCAGCGAGTTGACCGCGAACCACGAAGTCCTCGTCCACGGTGGAAGCAATGTTGGAGTAGAGCTCAACAGCGATGTTATGAGGGTTAAGTACTACGGTTTTACCTGTTACAGGACTCTGAGTGCTCTGAGGCGATCTGTTGTATGCGACCGCCTCATAGCACTCGTAGTCCTGAAAACAGTAGTACTTAACCATCTGAATATCGCCGTTGAACCCTATTCCAACATTGCTTCCATCGTCGCCGAGGATTCCGTGGTTCGCGGTGAACTCGCCGGACCTCACATACGATTCTTATATACTAGAGTTCGGGGTTGCGGCATGGACTCCGATGATGATATGCACGACGCCCACGACGCCGAGTCTCTTGATGATGATTTCTACAGCGGAGACTTTGATTATTGCAGTGATGATGACGATGTCGAAGCTGACGAATCGGTCGAGGAAGATGTCGATGATTTTGATAAAATCGAGTCTGGTCGCCAGGAGATAAATTATACTATATTGAAGGAATCTGACATACATGAACGTCAAGAGGACGATATTACGAGAATATCTACAGTACTTTCAATTCCACGTGTTGCAGCTACCATCTTGCTTCGCCACTTTAATTGGAATGTTAGTAAAGTGCATGATGAGTGGTTTGCTGATGAAGAAAGAGTGAGAAAGCAACTTGGCTTGCTGGATGCTCCAGTCCAGATTTTAAGTGGTTGTGAAGTTACGTGTGGGATATGTTTTGACTCCTATCCTCATGGAGAGATCAAATCAGCAGCTTGTGGTCATCCTTTTTGCACTTCATGTTGGAAAGGTTACGTTGGAACATCTATTAATGATGGTCCTGGATGTTTACTGTTAAGATGTCCGGATCCATCTTGTGGTGCTGCTGTTGGTCGAGACATGATTAATTTGTTGGCTTGCAATGAAGATAGGAAAAAGTATTCTCGATATCTTCTGAGGTCTTTTGTTGAAGACAATAAAAAGACCAAATGGTGCCCAGCACCGGGTTGTGAGTTTGCTGTGATTTTTTATGCTGGTAACAGGAACTATGACGTGACATGCCTGTGTTCTTATGGCTTTTGTTGGAACTGTACGGAGGAAGCGCACCGTCCCGTAGACTGTGGTACTGTGGAGAAATGGATTATGAAGAACAGTGCTGAATCTGAAAATATGAATTGGATTTTAGCTAACTCCAAGCCATGTCCAAAGTGTAAGCGGCCAATTGAGAAGAACCACGGGTGTATGCATATGACGTGCACACCGCCTTGTAAATTCGAGTTTTGCTGGCTATGCCTAGGTGTATGGTCCGATCATGGTGAGAGAACGGGTGGTTTTTATGCCTGTAATCGTTATGAAACAGCTAAACAAGAAGGCGTGTACGATGAAGCTGAGAGAAGAAGGGAAATGGCTAAAAACTCTATAGAGAGATACACCCATTACTATGAACGTTGGGCAAGCAATCAGTCGTCAAGACAAAAAGCTCTAGCGGATTTGCATCAAATGGAAACTGTACATATTGAGAAACTTAGTGACATGCAGTGCACTCCTGAATCTCAGCTCAAATTCATAACAGAGGCCTGGTTACAGATAATTGAGTGTAGGCGGGTTTTGAAGTGGACATATGCATATGGGTACTACCTTCCAGAAAATGACCAAGCTAAAAGACAGTTTTTTGAATACTTGCAAGGCGATGCAGAGTCTAATTTAGAAAGGCTTCATCAATGTGCAGAGAAGGAACTACAACAGTTCCTTGCTGCCGACGGGCCATCAAAAGAATTTAATGATTTTCGTACAAAGTTGGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAATCTGGTCAGAGCTTTAGAAAATGGTCTCTCGGATGTGGATGCTCGCGGAACTTGCAGCGGGACCAGCAGCTCAAAAGCTACTGCTGGAAGCATCAAAGTAAGACCCGGAAGGAGCAAGGGAAATTCAGTACGCACCAGTGGTTCGAGCCGAAATGTGGATAATTCCAGTGGTTGGTCATGTGAGCAATGTACGTATGCCAATCATACGGCTGCAACTACTTGCCAGATGTGCCTCCAACGAAGGTTGGCAGTTGGTGATGACAATGATATATGCAATCAAAATAGTTATACTTGTATTAAGCTTACTGCCTCAATGCATCGAATGCAAATTGACCCGTTTGTCGTTCATTTTACCGATATTAAGCCCACTAGGAGACACCCGGGAGCAGAGTATGTCGTGAAAGAAGCGCACTGGGTGGGCAAACCGAACTGGTACCGAAGAATCGAATTGGAATTGGAACCGGCAGTTTTGAGAACCGAACCGAACCAGACTGAGAACACTCCTAGCATCAACCGTGTCTTCGGTGCACGCAAATATCCTGATTCGCGGTGGGGCTGGGGGCTGGGGGCTGGTTTCCGGAACTGGGTTGGGTTTCACAAGGAATTGTATTGGGCTGCGTTTCACAAGGGAGTAGTATGTCACAAGAATTGGGCTGGGCTTCAATAA 2595 44.93 MHDNFPSFSSKCEYRYNTLFETSFYLASINRCFSELTANHEVLVHGGSNVGVELNSDVMRVKYYGFTCYRTLSALRRSVVCDRLIALVVLKTVVLNHLNIAVEPYSNIASIVAEDSVVRGELAGPHIRFLYTRVRGCGMDSDDDMHDAHDAESLDDDFYSGDFDYCSDDDDVEADESVEEDVDDFDKIESGRQEINYTILKESDIHERQEDDITRISTVLSIPRVAATILLRHFNWNVSKVHDEWFADEERVRKQLGLLDAPVQILSGCEVTCGICFDSYPHGEIKSAACGHPFCTSCWKGYVGTSINDGPGCLLLRCPDPSCGAAVGRDMINLLACNEDRKKYSRYLLRSFVEDNKKTKWCPAPGCEFAVIFYAGNRNYDVTCLCSYGFCWNCTEEAHRPVDCGTVEKWIMKNSAESENMNWILANSKPCPKCKRPIEKNHGCMHMTCTPPCKFEFCWLCLGVWSDHGERTGGFYACNRYETAKQEGVYDEAERRREMAKNSIERYTHYYERWASNQSSRQKALADLHQMETVHIEKLSDMQCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPENDQAKRQFFEYLQGDAESNLERLHQCAEKELQQFLAADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDARGTCSGTSSSKATAGSIKVRPGRSKGNSVRTSGSSRNVDNSSGWSCEQCTYANHTAATTCQMCLQRRLAVGDDNDICNQNSYTCIKLTASMHRMQIDPFVVHFTDIKPTRRHPGAEYVVKEAHWVGKPNWYRRIELELEPAVLRTEPNQTENTPSINRVFGARKYPDSRWGWGLGAGFRNWVGFHKELYWAAFHKGVVCHKNWAGLQ 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2657711 2667085 - BLOR00201 Blo01g00201 54641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00201 864 SUPERFAMILY Ran binding protein zinc finger-like 697 724 IPR036443 -
Blo01g00201 864 ProSitePatterns Zinc finger RanBP2-type signature. 701 720 IPR001876 -
Blo01g00201 864 Gene3D - 400 655 - -
Blo01g00201 864 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 176 672 - -
Blo01g00201 864 MobiDBLite consensus disorder prediction 682 700 - -
Blo01g00201 864 Gene3D - 695 732 - -
Blo01g00201 864 CDD RING-HC_RBR_TRIAD1_like 273 323 - -
Blo01g00201 864 ProSiteProfiles TRIAD supradomain profile. 269 482 IPR044066 -
Blo01g00201 864 SUPERFAMILY RING/U-box 343 411 - -
Blo01g00201 864 Pfam IBR domain, a half RING-finger domain 342 404 IPR002867 -
Blo01g00201 864 Pfam IBR domain, a half RING-finger domain 421 468 IPR002867 -
Blo01g00201 864 Pfam Ariadne domain 491 652 IPR045840 -
Blo01g00201 864 ProSiteProfiles Zinc finger RING-type profile. 273 317 IPR001841 -
Blo01g00201 864 Coils Coil 490 510 - -
Blo01g00201 864 MobiDBLite consensus disorder prediction 660 700 - -
Blo01g00201 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 357 IPR013083 -
Blo01g00201 864 SMART zf_4 699 723 IPR001876 -
Blo01g00201 864 SUPERFAMILY RING/U-box 423 471 - -
Blo01g00201 864 SUPERFAMILY RING/U-box 270 351 - -
Blo01g00201 864 SMART ibrneu5 408 478 IPR002867 -
Blo01g00201 864 SMART ibrneu5 342 404 IPR002867 -
Blo01g00201 864 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 176 672 IPR031127 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00201 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - vvi:100257000 937.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00201 Blo-Chr1:2657711 Blo18g00504 Blo-Chr18:6355363 0 dispersed
Blo01g00201 Blo-Chr1:2657711 Blo17g00514 Blo-Chr17:8162243 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1195 Blo01g00201 . . Bda08g00149 . . . . Cmo08g00213 Cmo17g00577 . . . . . . . . . . . . . . Cla08g00460 Cam08g0887 Cec08g0471 Cco08g0586 Clacu08g0604 . Cre08g0424 Cone14ag0574 . . . . . . . . . . . Bpe05g00982 . . . . . . . Cma17g00596 Car08g00187 Car17g00550 Cpe12g00507 Cpe17g01099 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo15g00712 BCT 107 478 ARIADNE family AT4G34370 62.1 2.1e-147 519.2
Blo15g00712 BCT 1 434 ARIADNE family AT2G16090 66.7 1.9e-189 659.1
Blo15g00712 BCT 1 412 ARIADNE family AT3G27710 57.7 1.3e-154 543.5
Blo17g00514 . 9 545 ARIADNE family AT1G05890 63.5 1.8e-218 755.7
Blo01g00201 . 196 671 ARIADNE family AT1G05890 71.7 6.4e-216 747.3
Blo18g00504 . 67 465 ARIADNE family AT1G05890 74.9 3.8e-192 668.3
Blo17g00514 . 18 540 ARIADNE family AT1G65430 78.2 8.2e-253 869.8
Blo01g00201 . 183 724 ARIADNE family AT1G65430 68.0 1.5e-230 795.8
Blo18g00504 . 67 468 ARIADNE family AT1G65430 81.1 5.6e-209 724.2
Blo17g00514 . 11 453 ARIADNE family AT2G31780 53.6 1.7e-144 509.6
Blo01g00201 . 139 587 ARIADNE family AT2G31780 55.9 5.4e-143 504.6
Blo18g00504 . 68 384 ARIADNE family AT2G31780 58.2 7.1e-119 424.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00201 Blo_Chr01 FPKM 4.733237 6.09624 16.538879 15.178288 59.223701 59.111298 60.65955 9.273095 8.639738 11.075315