Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00201 ATGCATGACAACTTTCCATCTTTCTCGAGCAAGTGTGAATATCGTTATAACACTTTATTTGAAACGTCATTTTACCTTGCATCCATCAACCGATGCTTCAGCGAGTTGACCGCGAACCACGAAGTCCTCGTCCACGGTGGAAGCAATGTTGGAGTAGAGCTCAACAGCGATGTTATGAGGGTTAAGTACTACGGTTTTACCTGTTACAGGACTCTGAGTGCTCTGAGGCGATCTGTTGTATGCGACCGCCTCATAGCACTCGTAGTCCTGAAAACAGTAGTACTTAACCATCTGAATATCGCCGTTGAACCCTATTCCAACATTGCTTCCATCGTCGCCGAGGATTCCGTGGTTCGCGGTGAACTCGCCGGACCTCACATACGATTCTTATATACTAGAGTTCGGGGTTGCGGCATGGACTCCGATGATGATATGCACGACGCCCACGACGCCGAGTCTCTTGATGATGATTTCTACAGCGGAGACTTTGATTATTGCAGTGATGATGACGATGTCGAAGCTGACGAATCGGTCGAGGAAGATGTCGATGATTTTGATAAAATCGAGTCTGGTCGCCAGGAGATAAATTATACTATATTGAAGGAATCTGACATACATGAACGTCAAGAGGACGATATTACGAGAATATCTACAGTACTTTCAATTCCACGTGTTGCAGCTACCATCTTGCTTCGCCACTTTAATTGGAATGTTAGTAAAGTGCATGATGAGTGGTTTGCTGATGAAGAAAGAGTGAGAAAGCAACTTGGCTTGCTGGATGCTCCAGTCCAGATTTTAAGTGGTTGTGAAGTTACGTGTGGGATATGTTTTGACTCCTATCCTCATGGAGAGATCAAATCAGCAGCTTGTGGTCATCCTTTTTGCACTTCATGTTGGAAAGGTTACGTTGGAACATCTATTAATGATGGTCCTGGATGTTTACTGTTAAGATGTCCGGATCCATCTTGTGGTGCTGCTGTTGGTCGAGACATGATTAATTTGTTGGCTTGCAATGAAGATAGGAAAAAGTATTCTCGATATCTTCTGAGGTCTTTTGTTGAAGACAATAAAAAGACCAAATGGTGCCCAGCACCGGGTTGTGAGTTTGCTGTGATTTTTTATGCTGGTAACAGGAACTATGACGTGACATGCCTGTGTTCTTATGGCTTTTGTTGGAACTGTACGGAGGAAGCGCACCGTCCCGTAGACTGTGGTACTGTGGAGAAATGGATTATGAAGAACAGTGCTGAATCTGAAAATATGAATTGGATTTTAGCTAACTCCAAGCCATGTCCAAAGTGTAAGCGGCCAATTGAGAAGAACCACGGGTGTATGCATATGACGTGCACACCGCCTTGTAAATTCGAGTTTTGCTGGCTATGCCTAGGTGTATGGTCCGATCATGGTGAGAGAACGGGTGGTTTTTATGCCTGTAATCGTTATGAAACAGCTAAACAAGAAGGCGTGTACGATGAAGCTGAGAGAAGAAGGGAAATGGCTAAAAACTCTATAGAGAGATACACCCATTACTATGAACGTTGGGCAAGCAATCAGTCGTCAAGACAAAAAGCTCTAGCGGATTTGCATCAAATGGAAACTGTACATATTGAGAAACTTAGTGACATGCAGTGCACTCCTGAATCTCAGCTCAAATTCATAACAGAGGCCTGGTTACAGATAATTGAGTGTAGGCGGGTTTTGAAGTGGACATATGCATATGGGTACTACCTTCCAGAAAATGACCAAGCTAAAAGACAGTTTTTTGAATACTTGCAAGGCGATGCAGAGTCTAATTTAGAAAGGCTTCATCAATGTGCAGAGAAGGAACTACAACAGTTCCTTGCTGCCGACGGGCCATCAAAAGAATTTAATGATTTTCGTACAAAGTTGGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAATCTGGTCAGAGCTTTAGAAAATGGTCTCTCGGATGTGGATGCTCGCGGAACTTGCAGCGGGACCAGCAGCTCAAAAGCTACTGCTGGAAGCATCAAAGTAAGACCCGGAAGGAGCAAGGGAAATTCAGTACGCACCAGTGGTTCGAGCCGAAATGTGGATAATTCCAGTGGTTGGTCATGTGAGCAATGTACGTATGCCAATCATACGGCTGCAACTACTTGCCAGATGTGCCTCCAACGAAGGTTGGCAGTTGGTGATGACAATGATATATGCAATCAAAATAGTTATACTTGTATTAAGCTTACTGCCTCAATGCATCGAATGCAAATTGACCCGTTTGTCGTTCATTTTACCGATATTAAGCCCACTAGGAGACACCCGGGAGCAGAGTATGTCGTGAAAGAAGCGCACTGGGTGGGCAAACCGAACTGGTACCGAAGAATCGAATTGGAATTGGAACCGGCAGTTTTGAGAACCGAACCGAACCAGACTGAGAACACTCCTAGCATCAACCGTGTCTTCGGTGCACGCAAATATCCTGATTCGCGGTGGGGCTGGGGGCTGGGGGCTGGTTTCCGGAACTGGGTTGGGTTTCACAAGGAATTGTATTGGGCTGCGTTTCACAAGGGAGTAGTATGTCACAAGAATTGGGCTGGGCTTCAATAA 2595 44.93 MHDNFPSFSSKCEYRYNTLFETSFYLASINRCFSELTANHEVLVHGGSNVGVELNSDVMRVKYYGFTCYRTLSALRRSVVCDRLIALVVLKTVVLNHLNIAVEPYSNIASIVAEDSVVRGELAGPHIRFLYTRVRGCGMDSDDDMHDAHDAESLDDDFYSGDFDYCSDDDDVEADESVEEDVDDFDKIESGRQEINYTILKESDIHERQEDDITRISTVLSIPRVAATILLRHFNWNVSKVHDEWFADEERVRKQLGLLDAPVQILSGCEVTCGICFDSYPHGEIKSAACGHPFCTSCWKGYVGTSINDGPGCLLLRCPDPSCGAAVGRDMINLLACNEDRKKYSRYLLRSFVEDNKKTKWCPAPGCEFAVIFYAGNRNYDVTCLCSYGFCWNCTEEAHRPVDCGTVEKWIMKNSAESENMNWILANSKPCPKCKRPIEKNHGCMHMTCTPPCKFEFCWLCLGVWSDHGERTGGFYACNRYETAKQEGVYDEAERRREMAKNSIERYTHYYERWASNQSSRQKALADLHQMETVHIEKLSDMQCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPENDQAKRQFFEYLQGDAESNLERLHQCAEKELQQFLAADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDARGTCSGTSSSKATAGSIKVRPGRSKGNSVRTSGSSRNVDNSSGWSCEQCTYANHTAATTCQMCLQRRLAVGDDNDICNQNSYTCIKLTASMHRMQIDPFVVHFTDIKPTRRHPGAEYVVKEAHWVGKPNWYRRIELELEPAVLRTEPNQTENTPSINRVFGARKYPDSRWGWGLGAGFRNWVGFHKELYWAAFHKGVVCHKNWAGLQ 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2657711 2667085 - BLOR00201 Blo01g00201 54641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00201 864 SUPERFAMILY Ran binding protein zinc finger-like 697 724 IPR036443 -
Blo01g00201 864 ProSitePatterns Zinc finger RanBP2-type signature. 701 720 IPR001876 -
Blo01g00201 864 Gene3D - 400 655 - -
Blo01g00201 864 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 176 672 - -
Blo01g00201 864 MobiDBLite consensus disorder prediction 682 700 - -
Blo01g00201 864 Gene3D - 695 732 - -
Blo01g00201 864 CDD RING-HC_RBR_TRIAD1_like 273 323 - -
Blo01g00201 864 ProSiteProfiles TRIAD supradomain profile. 269 482 IPR044066 -
Blo01g00201 864 SUPERFAMILY RING/U-box 343 411 - -
Blo01g00201 864 Pfam IBR domain, a half RING-finger domain 342 404 IPR002867 -
Blo01g00201 864 Pfam IBR domain, a half RING-finger domain 421 468 IPR002867 -
Blo01g00201 864 Pfam Ariadne domain 491 652 IPR045840 -
Blo01g00201 864 ProSiteProfiles Zinc finger RING-type profile. 273 317 IPR001841 -
Blo01g00201 864 Coils Coil 490 510 - -
Blo01g00201 864 MobiDBLite consensus disorder prediction 660 700 - -
Blo01g00201 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 357 IPR013083 -
Blo01g00201 864 SMART zf_4 699 723 IPR001876 -
Blo01g00201 864 SUPERFAMILY RING/U-box 423 471 - -
Blo01g00201 864 SUPERFAMILY RING/U-box 270 351 - -
Blo01g00201 864 SMART ibrneu5 408 478 IPR002867 -
Blo01g00201 864 SMART ibrneu5 342 404 IPR002867 -
Blo01g00201 864 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 176 672 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00201 Blo-Chr1:2657711 Blo18g00504 Blo-Chr18:6355363 0 dispersed
Blo01g00201 Blo-Chr1:2657711 Blo17g00514 Blo-Chr17:8162243 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00201 K11968 - vvi:100257000 937.176