Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00213 ATGCCTCTGGTTGGAGACCAAAAGGCGAAAGCACTCTTGACTACATCCAGAGTGTGCAATTGGAAGATTTTCCAGTTGGGCCAAGAACAGATCGGAGGAGTTTGTCACCGGGAACGAAATCTGCTCGTCGTCGGAAACCGGCCTCGGAATCGCCCCGTCACCGATCGGGAGTCGCCGTTCGCCGGAGCCGAGGGATCGGCTCAACTCGGAGCTCCGGCCGCAGATCGGGACTCGCCGGATCTGCTCGAGATCGGGAGTTTGTCGCTCGGGGAAACGGCCGTCGGCTCTCGGCCGACGTCGCACGGCCGCGGTTCGCAGCCGGAAGGAGCGCCGAGAAGATCGCCGGAAACCGAGCTCCCTGTCTCGGCCGGCGTTCCAGCTCACGAAGTCCCCGGCCTGTTCGTCGTTCGCCGACCCATTGTCCCAAACATTCCATTTCATGTCGACCCCGAAGAAGGATCAAGCCACAGACAAGAAACGGTGCAACACTTACCTCGATTTCATTACAAGAATTTTCGTCTCATAATGGAAGCAAACCTGGAAAGCCCTAACCCTCCATCTCCGCTGCACCCACCACCGTTTTCAACACCTCCTTACCCCTACACACCGTCACTTTCTCCTCTTTCTCTCGACCCCAACCATGTCATCGACTGGGCATCCCTTCTCTCGGACCAGGACAGACCAATAACGGACGACCCATCAGCTTCTAGCTCTTCTTTAATGGAGGAAACTGAAGTAGAAAAGGAGAAAGATTGCAGAAGAAAAGGTTTTAGAGTGAGAAAACCAAGCCGTCCTAGGGTTGTGTTTCAGACAAGAAGTGCTGAAGATATTCTTGACGATGGATTTCGATGGAGAAAATATGGACAAAAAGCTGTCAAGAACAGCGTCTATCCAAGGAGCTACTATCGTTGCACCCACCACACGTGCGAGGTGAAGAAACAAGTTCAAAGGTTATCAAAAGACAAGAGCATAGTGGTGACAACGTACGAGGGAGTCCACAACCATCCATGTGAGAAGTTGATGGAGACTCTCACTCCTCTTTTGAACCAAATCCAATTCCTTGCCCGTTTTTAA 1074 52.7 MPLVGDQKAKALLTTSRVCNWKIFQLGQEQIGGVCHRERNLLVVGNRPRNRPVTDRESPFAGAEGSAQLGAPAADRDSPDLLEIGSLSLGETAVGSRPTSHGRGSQPEGAPRRSPETELPVSAGVPAHEVPGLFVVRRPIVPNIPFHVDPEEGSSHRQETVQHLPRFHYKNFRLIMEANLESPNPPSPLHPPPFSTPPYPYTPSLSPLSLDPNHVIDWASLLSDQDRPITDDPSASSSSLMEETEVEKEKDCRRKGFRVRKPSRPRVVFQTRSAEDILDDGFRWRKYGQKAVKNSVYPRSYYRCTHHTCEVKKQVQRLSKDKSIVVTTYEGVHNHPCEKLMETLTPLLNQIQFLARF 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2784064 2791852 + BLOR00213 Blo01g00213 54653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00213 357 ProSiteProfiles WRKY domain profile. 273 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Blo01g00213 357 SMART WRKY_cls 278 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Blo01g00213 357 MobiDBLite consensus disorder prediction 46 125 - -
Blo01g00213 357 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 237 353 IPR044810 GO:0003700
Blo01g00213 357 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 237 353 - -
Blo01g00213 357 MobiDBLite consensus disorder prediction 226 252 - -
Blo01g00213 357 SUPERFAMILY WRKY DNA-binding domain 271 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
Blo01g00213 357 MobiDBLite consensus disorder prediction 184 200 - -
Blo01g00213 357 MobiDBLite consensus disorder prediction 179 200 - -
Blo01g00213 357 MobiDBLite consensus disorder prediction 227 241 - -
Blo01g00213 357 Pfam WRKY DNA -binding domain 279 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Blo01g00213 357 Gene3D WRKY domain 263 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00213 Blo-Chr1:2784064 Blo06g00121 Blo-Chr6:4767960 3.04E-64 dispersed
Blo01g00213 Blo-Chr1:2784064 Blo18g00328 Blo-Chr18:3401706 1.85E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11812 PF03106 WRKY 6.50E-25 CL0274 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00213 - - pop:7492733 215.312