Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00237 ATGGACTCCAGTTTCCTGCTTTATTCGCCTAAATCCTCTTTATCTACTTCTCTTCCTCTGTTTCTGCCTCACAAATCTCGTTACGCGGAAAATCAGAAAATTTCTGTGAAACCCCATTTTTTATCGCCGACCAAGCATTCGGATAAGTCTGAATTTTTGGGCCGGAGTCTGATTTTTCAACAGAAAAATGTTAAATTGGATCATTTAGGGAAGAATTGCGTCCCATTTCGGCCAGTAACTGCTGCTGTGAAGCGACGGAAAGAGCTTCCCTTTGATAACGTAATACAAAAAGACAAAAAGCTGAAGCTGGTTTTAAAGATTAGGAAGATTCTAGTTAGTCAACCTGATAGAACTATGTCGCTCAAGCAGATGGGTAGGTACAGAAGGGATCTTGGTCTTCAGAAAAAACGGAGACTTATCGCGTTATTGAGGAAATTCCCGGCCATTTTTGAGATTGTAGAAGAAGGGGTTTTCTCTTTGAAGTTTAAACTAACCCCTGAAGCGGAAAAGCTCTACTTAGAGGAAATGAGAGTTAGAAATGAGATGGAAGCTTTGTTGGTCATGAAATTGAGAAAATTACTGATGATGTCTTTACATAAACGAATTCTGCTCGAGAAAATCGCCCATTTAAAAACCGATTTGGCGCTTCCATTAGAATTTCGTGACACTATTTGTCATCGATATCCACAATATTTTCGAGTTGTGGCAACAGAACGCGGCCCGGCATTAGAGCTAACGCATTGGGATCCCGAGTTGGCTGTTTCTGCAGCAGAGTTAGCAGAGGAGGATAATCGAGCCCAAGAGTTGGAAGAGAAGAATTTGATCATTGATAGGCCTATGAAGTTCAATAGAGTGAAGCTTCCAAAAGGTCTGAATCTTTCAAAGGGGGAAATGAGAAAAATTTGTCAGTTTAGAGATATACCTTATATCTCCCCTTACTTGGATTTCTCGGCTTTAAGGGCGGGTACTCCCGAAAAAGAAAAACATGCTTGTGGTGTTGTTCATGAGATTTTGAGCTTGACTGTTGAAAAAAGAACTCTAGTCGATCACTTTACGCACTTTCGAGAAGAGTTTAGATTCTCTCAGCAGCTTCGGGGAATGCTGATTAGGCATCCTGATATGTTCTATGTGTCTTTGAAAGGAGAAAGAGATTCGGTTTTCCTAAGAGAAGCTTATCGCGATTCTCATTTGATTGATAAAGATCGATTGGAAGCCATCGAGGCTGGAATGAGAAAAGCCAAACAAGTTGGCAATAAGAAAGAGAGCGATAAAACGACTCTTACTCCCGTATATCCTGACGGGAAACCCCGGGTTCGTTGGTAA 1323 41.12 MDSSFLLYSPKSSLSTSLPLFLPHKSRYAENQKISVKPHFLSPTKHSDKSEFLGRSLIFQQKNVKLDHLGKNCVPFRPVTAAVKRRKELPFDNVIQKDKKLKLVLKIRKILVSQPDRTMSLKQMGRYRRDLGLQKKRRLIALLRKFPAIFEIVEEGVFSLKFKLTPEAEKLYLEEMRVRNEMEALLVMKLRKLLMMSLHKRILLEKIAHLKTDLALPLEFRDTICHRYPQYFRVVATERGPALELTHWDPELAVSAAELAEEDNRAQELEEKNLIIDRPMKFNRVKLPKGLNLSKGEMRKICQFRDIPYISPYLDFSALRAGTPEKEKHACGVVHEILSLTVEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVSLKGERDSVFLREAYRDSHLIDKDRLEAIEAGMRKAKQVGNKKESDKTTLTPVYPDGKPRVRW 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2939872 2941458 + BLOR00237 Blo01g00237 54677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00237 440 Coils Coil 252 272 - -
Blo01g00237 440 Pfam Plant organelle RNA recognition domain 87 406 IPR021099 GO:0003723
Blo01g00237 440 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 13 413 IPR045040 GO:0003723
Blo01g00237 440 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 13 413 IPR040293 GO:0000373|GO:0003723
Blo01g00237 440 MobiDBLite consensus disorder prediction 414 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00237 - - - tcc:18614000 605.134
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00237 Blo-Chr1:2939872 Blo12g00707 Blo-Chr12:25360841 2.16E-54 dispersed
Blo01g00237 Blo-Chr1:2939872 Blo02g00417 Blo-Chr2:5475788 1.61E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1115 Blo01g00237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1361 . . . . . . . . . . . Bpe05g01024 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi15g740 Blo01g00237 . . Bda08g00113 . Bpe05g01024 . . Cmo08g00127 Cmo17g00545 . . . . . . . . . . . . . . . . . . . . . Cone14ag0412 Cone15ag0451 . . . . . . . . . . . . . . . . . . . . . Cpe17g01025 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010663 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00237 Blo_Chr01 FPKM 2.718103 3.252829 0.0 0.314457 0.656397 0.0 0.0 0.0 0.341461 0.0