Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00258 ATGGAGTTTGTGCCAAAAGCAAAAGGGTACTCTGATAGAGAGAAGGCCGAAGAAGAAGAAGAGATACAAGGTAGCTCTTCTGCTTACAAGCTTTCATTTTCTTCTGACTCTCAATCTTCTCCTTCAGCATATAAGCTATGGCAAGGGAATTGTCAATCTGAATACGGGGCTTCAAGATCTTACAATATGAATGAACTCCCTTCACCAGAAACCGCCATTGACGGCTACGAGAAGCTTCAGGCAGTAGACTTATCACTGCGAATTGACAACGACATAGGAGGTGAAATCGACGGAGATCGAAGCTTTGGCCATGGAGATTGCAGCGAAAAAGAACACATGTTTGATAAGGTAGTGACACCCAGTGATGTTGGAAAGCTAAATCGTTTAGTAATTCCAAAGCAACAAGCGGAGAAATACTTCCCTCTTGATTCGTCGTCAAACGAAAAGGGTTTGATTTTGAATTTCGAAGATCGAAACAGAAAATCATGGCGGTTTCGTTATTCTTACTGGAACAGTAGCCAGAGCTACGTGATGACAAAAGGATGGAGTAGGTTTGTGAAAGAAAAGAAGCTAGTTGCTGGGGATGTCGTTTCATTTGAACGGGGAGTGGGAGAGGTTGGAAAGCATCGTCTTTTCATTGACTGGAGGCGCCGCCCAGATGCGCCGCTCCATCTGGCGGCGCTCGCTCATCTTCCTCAGACAATGAAATGGGGAAGTAGACAGCTGATCCCTCCGTCAATGGCGGCGCTCCCTCCCCACCATTACCACCATTTTCAAAACCCAAATTACAATACGATCAATCCGCATTATTATCAAAATGGAGCTTCAGAATACTTCAATGGAGGAACCTTCGAATCAGGTTCTCTTTATTACTTAAGGCCGTCTTCTTCTTACGCCATCGGAGGACTACAACAAGGTGTGGAAGCTTCTCCAATGGTGATCGATTCTGTGCCAGTAGTCCACCATGGAAAATCTAAACCTAAACGGCTTAGACTGTTTGGTGTGAATTTGGAGTGTCCTGTATCAGAAGAACCCATTACTACTCCTCATTTTTCAAGCTCCTCTTCAAGTCCTCAACCGCCATTTTTAATCGAGTATTCAGCAAGAGGAAAAGCTTCCTCCTCCCTCCAATGGAATCCGCATTGA 1146 44.76 MEFVPKAKGYSDREKAEEEEEIQGSSSAYKLSFSSDSQSSPSAYKLWQGNCQSEYGASRSYNMNELPSPETAIDGYEKLQAVDLSLRIDNDIGGEIDGDRSFGHGDCSEKEHMFDKVVTPSDVGKLNRLVIPKQQAEKYFPLDSSSNEKGLILNFEDRNRKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLVAGDVVSFERGVGEVGKHRLFIDWRRRPDAPLHLAALAHLPQTMKWGSRQLIPPSMAALPPHHYHHFQNPNYNTINPHYYQNGASEYFNGGTFESGSLYYLRPSSSYAIGGLQQGVEASPMVIDSVPVVHHGKSKPKRLRLFGVNLECPVSEEPITTPHFSSSSSSPQPPFLIEYSARGKASSSLQWNPH 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3310680 3311825 + BLOR00258 Blo01g00258 54698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00258 381 MobiDBLite consensus disorder prediction 1 24 - -
Blo01g00258 381 SUPERFAMILY DNA-binding pseudobarrel domain 110 220 IPR015300 -
Blo01g00258 381 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 75 359 IPR044800 GO:0003700
Blo01g00258 381 Gene3D - 107 226 IPR015300 -
Blo01g00258 381 Pfam B3 DNA binding domain 114 218 IPR003340 GO:0003677
Blo01g00258 381 MobiDBLite consensus disorder prediction 1 42 - -
Blo01g00258 381 CDD B3_DNA 112 201 IPR003340 GO:0003677
Blo01g00258 381 SMART B3_2 114 219 IPR003340 GO:0003677
Blo01g00258 381 ProSiteProfiles B3 DNA-binding domain profile. 114 219 IPR003340 GO:0003677
Blo01g00258 381 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 75 359 - -
Blo01g00258 381 MobiDBLite consensus disorder prediction 25 42 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00258 - - - vvi:100259130 323.939
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00258 Blo12g00198 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00258 Blo-Chr1:3310680 Blo19g00130 Blo-Chr19:3745824 7.11E-85 dispersed
Blo01g00258 Blo-Chr1:3310680 Blo12g00198 Blo-Chr12:12940147 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g596 Blo01g00258 Blo12g00198 Bda03g01027 Bda08g00078 . . Bma04g00935 Bma05g01206 . Cmo17g00535 . . . . . . . . . . . . . . . . . . . . . Cone14ag0476 . . . . Csa06g00841 Chy11g01776 . . . Bda11g00402 . Bpe13g00799 Bpe04g00972 . Bma06g01360 Sed01g3764 . . . Cma17g00554 . Car17g00502 . Cpe12g00470 Bhi12g02268 Tan06g1845 Cmetu11g1435 Lac12g1184 Hepe03g0743 . . Cla06g00220 Cam06g0239 Cec06g0239 Cco06g0234 Clacu06g0233 Cmu06g0229 Cre06g1000 Lsi09g01706 . . Cme11g02307
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo09g00482 . 91 207 RAV Transcription Factor Family AT2G36080 73.7 1.3e-47 186.4
Blo12g00198 BCT 108 230 RAV Transcription Factor Family AT2G36080 64.3 3.0e-41 165.2
Blo03g00788 BCT 86 200 RAV Transcription Factor Family AT2G36080 66.9 1.2e-40 163.3
Blo19g00130 BCT 87 199 RAV Transcription Factor Family AT2G36080 67.2 7.5e-40 160.6
Blo01g00258 BCT 109 231 RAV Transcription Factor Family AT2G36080 62.7 4.1e-38 154.8
Blo12g00198 BCT 82 338 RAV Transcription Factor Family AT2G46870 51.7 6.2e-61 231.5
Blo01g00258 BCT 103 339 RAV Transcription Factor Family AT2G46870 51.8 8.4e-58 221.1
Blo19g00130 BCT 87 336 RAV Transcription Factor Family AT2G46870 51.7 7.1e-57 218.0
Blo11g00830 BCT 187 299 RAV Transcription Factor Family AT2G46870 64.7 1.3e-37 154.1
Blo06g00971 BCT 191 299 RAV Transcription Factor Family AT2G46870 67.9 1.3e-37 154.1
Blo09g00482 . 92 233 RAV Transcription Factor Family AT3G11580 62.7 8.4e-47 184.1
Blo12g00198 BCT 107 225 RAV Transcription Factor Family AT3G11580 61.5 2.4e-41 166.0
Blo03g00788 BCT 86 212 RAV Transcription Factor Family AT3G11580 59.0 1.7e-39 159.8
Blo19g00130 BCT 87 204 RAV Transcription Factor Family AT3G11580 59.7 1.9e-38 156.4
Blo01g00258 BCT 108 221 RAV Transcription Factor Family AT3G11580 60.0 2.7e-37 152.5
Blo12g00198 BCT 108 340 RAV Transcription Factor Family AT3G61970 50.8 2.7e-53 206.1
Blo19g00130 BCT 82 215 RAV Transcription Factor Family AT3G61970 72.5 7.8e-53 204.5
Blo06g00971 BCT 187 299 RAV Transcription Factor Family AT3G61970 67.0 1.9e-38 156.8
Blo11g00830 BCT 189 299 RAV Transcription Factor Family AT3G61970 66.4 2.4e-38 156.4
Blo09g00482 . 86 299 RAV Transcription Factor Family AT5G06250 50.9 2.9e-51 199.1
Blo12g00198 BCT 109 217 RAV Transcription Factor Family AT5G06250 65.5 1.8e-40 163.3
Blo19g00130 BCT 88 195 RAV Transcription Factor Family AT5G06250 66.9 4.0e-40 162.2
Blo03g00788 BCT 87 199 RAV Transcription Factor Family AT5G06250 64.2 2.0e-39 159.8
Blo01g00258 BCT 110 218 RAV Transcription Factor Family AT5G06250 66.4 1.3e-38 157.1
Blo03g01003 . 57 284 RAV Transcription Factor Family AT1G50680 60.7 5.7e-76 281.6
Blo03g01003 . 57 284 RAV Transcription Factor Family AT1G51120 59.5 3.5e-76 282.3
Blo06g00971 BCT 1 370 RAV Transcription Factor Family AT1G13260 62.0 2.2e-112 402.5
Blo11g00830 BCT 1 370 RAV Transcription Factor Family AT1G13260 62.9 1.6e-110 396.4
Blo19g00130 BCT 72 194 RAV Transcription Factor Family AT1G13260 65.3 2.1e-38 156.8
Blo03g00788 BCT 88 202 RAV Transcription Factor Family AT1G13260 69.0 3.7e-38 156.0
Blo09g00482 . 93 204 RAV Transcription Factor Family AT1G13260 66.1 5.3e-37 152.1
Blo01g00258 BCT 111 231 RAV Transcription Factor Family AT1G13260 63.9 9.0e-37 151.4
Blo06g00971 BCT 26 325 RAV Transcription Factor Family AT3G25730 66.4 1.3e-101 366.7
Blo11g00830 BCT 26 325 RAV Transcription Factor Family AT3G25730 65.8 1.1e-100 363.6
Blo11g00830 BCT 1 371 RAV Transcription Factor Family AT1G68840 62.8 2.2e-115 412.5
Blo06g00971 BCT 1 371 RAV Transcription Factor Family AT1G68840 61.5 3.2e-114 408.7
Blo03g00788 BCT 59 192 RAV Transcription Factor Family AT1G68840 61.0 3.4e-39 159.5
Blo19g00130 BCT 88 194 RAV Transcription Factor Family AT1G68840 70.6 1.3e-38 157.5
Blo09g00482 . 92 200 RAV Transcription Factor Family AT1G68840 67.0 7.1e-37 151.8
Blo06g00971 BCT 26 325 RAV Transcription Factor Family AT3G25730 66.4 1.3e-101 366.7
Blo11g00830 BCT 26 325 RAV Transcription Factor Family AT3G25730 65.8 1.1e-100 363.6
Blo03g01003 . 57 284 RAV Transcription Factor Family AT1G51120 59.5 3.5e-76 282.3
Blo09g00482 . 92 233 RAV Transcription Factor Family AT3G11580 62.7 8.4e-47 184.1
Blo12g00198 BCT 107 225 RAV Transcription Factor Family AT3G11580 61.5 2.4e-41 166.0
Blo03g00788 BCT 86 212 RAV Transcription Factor Family AT3G11580 59.0 1.7e-39 159.8
Blo19g00130 BCT 87 204 RAV Transcription Factor Family AT3G11580 59.7 1.9e-38 156.4
Blo01g00258 BCT 108 221 RAV Transcription Factor Family AT3G11580 60.0 2.7e-37 152.5
Blo09g00482 . 91 207 RAV Transcription Factor Family AT2G36080 73.7 1.3e-47 186.4
Blo12g00198 BCT 108 230 RAV Transcription Factor Family AT2G36080 64.3 3.0e-41 165.2
Blo03g00788 BCT 86 200 RAV Transcription Factor Family AT2G36080 66.9 1.2e-40 163.3
Blo19g00130 BCT 87 199 RAV Transcription Factor Family AT2G36080 67.2 7.5e-40 160.6
Blo01g00258 BCT 109 231 RAV Transcription Factor Family AT2G36080 62.7 4.1e-38 154.8
Blo09g00482 . 86 299 RAV Transcription Factor Family AT5G06250 50.9 2.9e-51 199.1
Blo12g00198 BCT 109 217 RAV Transcription Factor Family AT5G06250 65.5 1.8e-40 163.3
Blo19g00130 BCT 88 195 RAV Transcription Factor Family AT5G06250 66.9 4.0e-40 162.2
Blo03g00788 BCT 87 199 RAV Transcription Factor Family AT5G06250 64.2 2.0e-39 159.8
Blo01g00258 BCT 110 218 RAV Transcription Factor Family AT5G06250 66.4 1.3e-38 157.1
Blo12g00198 BCT 82 338 RAV Transcription Factor Family AT2G46870 51.7 6.2e-61 231.5
Blo01g00258 BCT 103 339 RAV Transcription Factor Family AT2G46870 51.8 8.4e-58 221.1
Blo19g00130 BCT 87 336 RAV Transcription Factor Family AT2G46870 51.7 7.1e-57 218.0
Blo11g00830 BCT 187 299 RAV Transcription Factor Family AT2G46870 64.7 1.3e-37 154.1
Blo06g00971 BCT 191 299 RAV Transcription Factor Family AT2G46870 67.9 1.3e-37 154.1
Blo03g01003 . 57 284 RAV Transcription Factor Family AT1G50680 60.7 5.7e-76 281.6
Blo12g00198 BCT 108 340 RAV Transcription Factor Family AT3G61970 50.8 2.7e-53 206.1
Blo19g00130 BCT 82 215 RAV Transcription Factor Family AT3G61970 72.5 7.8e-53 204.5
Blo06g00971 BCT 187 299 RAV Transcription Factor Family AT3G61970 67.0 1.9e-38 156.8
Blo11g00830 BCT 189 299 RAV Transcription Factor Family AT3G61970 66.4 2.4e-38 156.4
Blo06g00971 BCT 1 370 RAV Transcription Factor Family AT1G13260 62.0 2.2e-112 402.5
Blo11g00830 BCT 1 370 RAV Transcription Factor Family AT1G13260 62.9 1.6e-110 396.4
Blo19g00130 BCT 72 194 RAV Transcription Factor Family AT1G13260 65.3 2.1e-38 156.8
Blo03g00788 BCT 88 202 RAV Transcription Factor Family AT1G13260 69.0 3.7e-38 156.0
Blo09g00482 . 93 204 RAV Transcription Factor Family AT1G13260 66.1 5.3e-37 152.1
Blo01g00258 BCT 111 231 RAV Transcription Factor Family AT1G13260 63.9 9.0e-37 151.4
Blo11g00830 BCT 1 371 RAV Transcription Factor Family AT1G68840 62.8 2.2e-115 412.5
Blo06g00971 BCT 1 371 RAV Transcription Factor Family AT1G68840 61.5 3.2e-114 408.7
Blo03g00788 BCT 59 192 RAV Transcription Factor Family AT1G68840 61.0 3.4e-39 159.5
Blo19g00130 BCT 88 194 RAV Transcription Factor Family AT1G68840 70.6 1.3e-38 157.5
Blo09g00482 . 92 200 RAV Transcription Factor Family AT1G68840 67.0 7.1e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000626 3 5 4 4 3 3 5 3 3 3 3 3 6 3 3 6 3 1 4 3 3 2 3 3 3 3 2 7 4 2 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11819 PF02362 B3 5.90E-28 CL0405 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00258 Blo_Chr01 FPKM 114.128014 134.190308 17.493107 18.748972 0.993136 1.528724 1.18424 0.107542 0.150485 0.280996