Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00274 ATGCAGGCCAGACCATTGCATTTAGCTCCCATTAGTTTCCCTTCGCCAATCGACGTTCCTCCGGTCTTCAGGATTTCTTCCCGTCCGGCGGTATTATCACGAGCCATAACTATTTCCACTCCGAACAACACTAGGTTCGCTGAACCGCCGGTTATAGACGTGGTGGACGACTCAGTCGCTGCGTTTTGGGATTATCAGTTTCTTTTCGTTTCGCAGAGATTGGAGACTGCTCAACCGGCCAAGCTTAGAGTGGTCGACGGAGCCATTCCCGCAGATTTTCCTGCCGGCACTTACTATTTAGCAGGGCCTGGGCTTTTCGCCGACGATCATGGTTCGACGGTGCACCCGCTCGACGGTCACGGTTATCTTAGGGCTTTTATTTTCGACGAAGGAAATAAAGAGGCGAAGTTCATGGCGAAGTACGTAAAGACGGCGGCGCAGGTGGAGGAGCACGATCCATCAACCGATACGTGGCGGTTCACCCACCGAGGTCCGTTCTCCGTCCTGAAAGGAGGGCAGAAAGTGGGGAATACGAAGGTGATGAAAAATGTCGCCAACACCAGCGTGTTGATGTGGGGCGGGAGGCTCATGTGCCTCTGGGAAGGTGGGGACCCTTACGAGATCGAATCAGGGACGTTGAATACCATTGGGACGCTGGATTTGATCAGCGGCTCTGATTCAGAGACGGAGAAAGTAAGCGATGGGGTTGATGCATGGGATATGGCCGCAACGATGCTGAAGCCGATATTACAAGGAGTGTTTAAGATGCCGCCAAAGAGATTATTGTCTCACTACAAGATAGATGGTCACAGAAATAGGCTGCTTTTAATGGCGTGTAATACTGAAGATATGCTCCTCCCTCGCAGCAATTTCACTTTTTATGAATTTGATTCGAATTTCAATGTGCTGGAGAAGCAAGAGTTCAGCATTCCAGATCACTTGATGATCCACGATTGGGCTTTTACGGACACTCATTACTTGCTGTTCGGCAATCGCATTAAGCTTGACGTTCCGGGAGCGATGGCTGCAGTGTGTGGGATAACGCCGATGATATCGGCGTTATCAGTGAATCCCAGCAAAGAAACGTCTCCTATTTATTTGCTTCCTCGATTTCCTAACGAATCGCACGGAGATCGAGATTGGAGAGTGCCCGTTGAAGTTCCTTCTCAATTGTGGCTTCTGCACGTCGGTAACGCATTCGAATACAAGGACGATGGTGGGAGCTTGAATATCCAAGTCCATGCCAGCGCTTGCTCTTACAAATGGTTCAATTTTCACAAGTTATTCGGATACAATTGGCAAAGTGGTCAACTAGACCCTTCCATTATGAACATAACTGCAGCAGAAAGTGAGCTATTGCCTCACCTTGTTCAAGTATCTATCACATTGGATGCTGATGGAAACAGCCAGACATGTTGTGTGGAGCACTTGAACCAGGGGAACAAAGCCTCAGATTTCCCTGCAATAAACCCTGCCTTTTCTGGGTACAAAAATAAGTACATCTATGCAGCCACTTCTTCCGGGGCTCGCCGTTCCTTGCCCTCTTTCCCTTTCGATACGGTAATGAAGCTCAACGTCCAAAACACCTCCACTCGTACATGGTCGGCCGGAAATCGAAGATTTATAGGCGAACCCGTTTTCGTTCCAAAAGGAGATGAAGAAGATGATGGGTATCTACTCGTGGTCGAGTATGCAGTGTACATGCAGAGGTGTTTTCTGGTGATTTTGAATCCTAAGAGGATTGGAGAGGCTGATGCAGTTGTAGCAAGGCTTGAAGTCCCTCGACATTTGAACTTTCCCATTGGATTTCATGAACACGACGAGGCAAGTGAGTGCCTCATCTACGGCAGCCCCAACGTCGACGCTCGTCTTGTCGGAATTGAGTACGTCGCATCGGAAAGTCTCTTCTTGACGCTCCCGGACGAGGGGAAGCACCTCGAGCAATCCTACGATTCAGTATCTCTGCTGTGGTCAGAGTGGATGATGAAAAGACGGGAGAGTTCCGGAGGAGAAGGAAAGATGAGTTTGGTTGAAGAGGGAGGAATGGTTACTCTCGACGAGCTGAGGAACAGAATGGCTGAGTTTACGAGGGAGAGAGACTGGGATCAGTTTCACAGCCCTAGAAATCTTCTTTTGGCTCTGGTGGGTGAAGTGGGAGAGCTGTCTGAGATATTTCAATGGAGAGGGGAGGTTGCAGGAGGGCTGGATGACTGGAAGGACGAAGAGAAACAACACTTGGGGGAAGAGCTATCTGACGTTTTGCTCTATCTTATTAGACTGTCTGACGTTTGTGGCATAGATTTAGGCAAAGCTGCTCTGCGAAAGCTGGAGCTCAACGCCACAAAATACCCAGTGAAGCTGTGTAAAAGCTCTTCCGTCAAGTACACCCAAATCCGCGGCTTTGGTGCAGTTGCAGACCCATCTTCCAACAATGACAGCAAAAGTTCCAGTGATGCCCTCTGA 2463 49.21 MQARPLHLAPISFPSPIDVPPVFRISSRPAVLSRAITISTPNNTRFAEPPVIDVVDDSVAAFWDYQFLFVSQRLETAQPAKLRVVDGAIPADFPAGTYYLAGPGLFADDHGSTVHPLDGHGYLRAFIFDEGNKEAKFMAKYVKTAAQVEEHDPSTDTWRFTHRGPFSVLKGGQKVGNTKVMKNVANTSVLMWGGRLMCLWEGGDPYEIESGTLNTIGTLDLISGSDSETEKVSDGVDAWDMAATMLKPILQGVFKMPPKRLLSHYKIDGHRNRLLLMACNTEDMLLPRSNFTFYEFDSNFNVLEKQEFSIPDHLMIHDWAFTDTHYLLFGNRIKLDVPGAMAAVCGITPMISALSVNPSKETSPIYLLPRFPNESHGDRDWRVPVEVPSQLWLLHVGNAFEYKDDGGSLNIQVHASACSYKWFNFHKLFGYNWQSGQLDPSIMNITAAESELLPHLVQVSITLDADGNSQTCCVEHLNQGNKASDFPAINPAFSGYKNKYIYAATSSGARRSLPSFPFDTVMKLNVQNTSTRTWSAGNRRFIGEPVFVPKGDEEDDGYLLVVEYAVYMQRCFLVILNPKRIGEADAVVARLEVPRHLNFPIGFHEHDEASECLIYGSPNVDARLVGIEYVASESLFLTLPDEGKHLEQSYDSVSLLWSEWMMKRRESSGGEGKMSLVEEGGMVTLDELRNRMAEFTRERDWDQFHSPRNLLLALVGEVGELSEIFQWRGEVAGGLDDWKDEEKQHLGEELSDVLLYLIRLSDVCGIDLGKAALRKLELNATKYPVKLCKSSSVKYTQIRGFGAVADPSSNNDSKSSSDAL 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3466377 3472233 + BLOR00274 Blo01g00274 54714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00274 820 Pfam Retinal pigment epithelial membrane protein 70 604 IPR004294 GO:0016702
Blo01g00274 820 SUPERFAMILY all-alpha NTP pyrophosphatases 683 797 - -
Blo01g00274 820 Pfam MazG-like family 717 797 IPR025984 GO:0009143|GO:0047429
Blo01g00274 820 Pfam Protein of unknown function (DUF1264) 606 647 IPR010686 -
Blo01g00274 820 CDD NTP-PPase_RS21-C6_like 689 779 IPR025984 GO:0009143|GO:0047429
Blo01g00274 820 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 7, CHLOROPLASTIC 47 605 - -
Blo01g00274 820 Gene3D - 679 789 - -
Blo01g00274 820 PANTHER BETA-CAROTENE DIOXYGENASE 47 605 IPR004294 GO:0016702
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00274 K17912 CCD7; 9-cis-beta-carotene 9',10'-cleaving dioxygenase [EC:1.13.11.68] - tcc:18614404 916.761
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00274 Blo12g00181 BCT
Blo01g00274 Blo12g00152 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00274 Blo-Chr1:3466377 Blo05g00287 Blo-Chr5:3186169 1.93E-43 dispersed
Blo18g00532 Blo-Chr18:7204284 Blo01g00274 Blo-Chr1:3466377 4.51E-07 dispersed
Blo04g00783 Blo-Chr4:7774546 Blo01g00274 Blo-Chr1:3466377 9.78E-46 transposed
Blo12g00152 Blo-Chr12:10397772 Blo01g00274 Blo-Chr1:3466377 5.44E-66 transposed
Blo01g00274 Blo-Chr1:3466377 Blo12g00151 Blo-Chr12:10371050 2.03E-12 wgd
Blo01g00274 Blo-Chr1:3466377 Blo12g00181 Blo-Chr12:12106437 2.16E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g731 Blo01g00274 Blo12g00152 Bda03g01076 . Bpe04g00999 . Bma04g00990 Bma05g01219 . . . Cma14g01820 . Car14g01632 . . Cpe03g01524 Bhi01g00714 . . . Hepe05g1666 . . . . . . . . . Cone14ag0159 Cone15ag0170 . . Lsi05g01743 . . Cme06g00479 . . Bda11g00639 . Bpe05g01074 Bpe13g00550 . Bma06g01606 . . Cmo14g01860 . . . . . . . . . . . . . Cla05g00435 Cam05g0473 Cec05g0482 Cco05g0482 Clacu05g0470 Cmu05g0448 Cre05g0510 . Csa03g01197 Chy06g00461 .
Vvi5g1065 Blo01g00274 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g01074 . . . . . . . . . . . . . . . . . . . Cla07g01472 Cam07g1572 Cec07g1671 Cco07g1632 Clacu07g1563 Cmu07g1531 Cre07g1907 . . . .
Vvi15g356 Blo01g00274 Blo12g00181 Bda03g01047 . . . . Bma05g01218 . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0533 . . . Csa06g00873 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010427 2 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00274 Blo_Chr01 FPKM 0.0 0.0 11.609401 14.377799 49.798832 46.073269 51.610126 2.722704 2.271528 2.198136