Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00275 ATGGCGGACTACGAAGATAGATTTGATGGTAATGGTGAAGGTGCTGAACTCTTTGGTGATGGTTCTTCTCCCTTACCTCGTGGTAGCCACGGCGGTTTCCATGATTATACCGATTCCAAATCTCAGTGTGGCTTGCATGACCATGAAAGAGAGTCTTCAAAAAGCAGGGAAAGGGAAAGAGAAAAAGGCCGTGACAGAGAAAGGGGTAGGAATAGAGATCGAGATAAGGAGAGGGAAAGAGATATGGAGAAAAGTAGAGAAAGAGAGAGGGATAGGGATCGAGAAAAAGATCGCGACCGCCATCACAAAGATCGTCATCGGGAACGAAGTGAGAGAAGGGAACGCAGGAGAAGTAGAGACGATGATGACGATGATGATTATTACAGGAGGCGGGATTATGAGAGGCAAAGGGAGTATGACAGGGACCGAGAAGACAGGCACGCGTGCATGCGAAGGTCTCGGTCTCGATCTCTTTCAAAAGGAAGATCTGAGCGTAAGTCAACCTCACGTTCTCGTTCACGCTCTTGCTCAAAAAGAATAAGTGGTTTTGACATGGCGCCTCCTGCTACTGCACTTATACCTGGTTCTGTTGTCCCTACAGGCCAGATTCCTGGAACGAATCCTGTCATTCCTGGAATGTTAACCCCCATGTTTTCTTTATCAACTGCTCAGCCCTTTGGTGGATTTCCTGTCATGCCAGTTCAGGCCATGACCCAACAGGCTACTCGGCATGCCCGACGTGTGTATGTGGGAGGGCTTTCTCCAACAGCTAATGAACAGACTGTTGCCATTTTTTTCAGTCATGTTATGGCTGCAATCGGAGGAAACACGGCGGGTCCTGGGGATGCTGTTGTCAATGTATACATTAACCATGAGAAAAAGTTTGCTTTCGTTGAAATGAGATCTGTTGAGGAAGCCAGTAATGCAATGGCATTGGATGGGATTATCTTTGAGGGAGCACCAGTTAAAGTTCGGAGGCCAAGTGACTACGTTCCAACTCTTGCTGCCACACTTGGACCTAGTCAGCCAAATCCCAATCTGAATCTAGCTGCTGTTGGGCTATCGTCTGGTTCTGCTGGTGGGCTTGAGGGTCCTGACCGAATTTTTGTGGGTGGGCTACCATATTACTTCACAGAAGCACAGGTTAGGGAGCTGTTGGAATCTTTTGGGCCTCTGCGGGGTTTTGATCTGGTGAAAGATAGAGAAACAGGGAATTCAAAAGGCTATGCATTTTGTGTATATCAAGAACTTTCTGTTACAGACATAGCTTGTGCTGCTCTTAATGGTATCAAAATGGGTGACAAAACACTTACTGTTAGGCGTGCCAATCAAGGTTCTATGCAACCTAAGCCCGAGTTAGAGAATATACTATTACATGCTCAACAACATATTGCGCTGCAGTCTTTGGTTGTTGCAAAAATATCATTTAGAGCAATCTTTTTAGTGATTACGGTGTTAATACCTATTTCATTAGTGTTCTTGGAGTATGTAGACACAGACAGTGCTACTAAGGCGCGTGCCGGGTTGAATGGAAGGAAGTTCGGAGGGAATCAGGTAGTGGCTGTCTATTATCCGGAGAACAAGTTTGCCGAGGGGGATTACGAAGGCTGCTAA 1614 46.34 MADYEDRFDGNGEGAELFGDGSSPLPRGSHGGFHDYTDSKSQCGLHDHERESSKSREREREKGRDRERGRNRDRDKERERDMEKSRERERDRDREKDRDRHHKDRHRERSERRERRRSRDDDDDDDYYRRRDYERQREYDRDREDRHACMRRSRSRSLSKGRSERKSTSRSRSRSCSKRISGFDMAPPATALIPGSVVPTGQIPGTNPVIPGMLTPMFSLSTAQPFGGFPVMPVQAMTQQATRHARRVYVGGLSPTANEQTVAIFFSHVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYVPTLAATLGPSQPNPNLNLAAVGLSSGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQELSVTDIACAALNGIKMGDKTLTVRRANQGSMQPKPELENILLHAQQHIALQSLVVAKISFRAIFLVITVLIPISLVFLEYVDTDSATKARAGLNGRKFGGNQVVAVYYPENKFAEGDYEGC 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3484648 3490380 + BLOR00275 Blo01g00275 54715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00275 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 246 329 IPR000504 GO:0003723
Blo01g00275 537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 368 437 IPR000504 GO:0003723
Blo01g00275 537 Gene3D - 241 342 IPR012677 -
Blo01g00275 537 CDD RRM1_U2AF65 245 327 - -
Blo01g00275 537 Gene3D - 488 535 IPR012677 -
Blo01g00275 537 SUPERFAMILY RNA-binding domain, RBD 232 327 IPR035979 GO:0003676
Blo01g00275 537 MobiDBLite consensus disorder prediction 111 152 - -
Blo01g00275 537 MobiDBLite consensus disorder prediction 40 104 - -
Blo01g00275 537 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 490 535 - -
Blo01g00275 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 444 IPR000504 GO:0003723
Blo01g00275 537 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 1 473 - -
Blo01g00275 537 MobiDBLite consensus disorder prediction 1 187 - -
Blo01g00275 537 PANTHER RNA-BINDING PROTEIN 1 473 - -
Blo01g00275 537 PANTHER RNA-BINDING PROTEIN 490 535 - -
Blo01g00275 537 SMART rrm1_1 367 440 IPR000504 GO:0003723
Blo01g00275 537 SMART rrm1_1 247 325 IPR000504 GO:0003723
Blo01g00275 537 CDD RRM2_U2AF65 366 442 - -
Blo01g00275 537 Gene3D - 355 455 IPR012677 -
Blo01g00275 537 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 74 471 IPR006529 GO:0003723|GO:0005634|GO:0006397
Blo01g00275 537 SUPERFAMILY RNA-binding domain, RBD 367 527 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00275 K12837 U2AF2; splicing factor U2AF 65 kDa subunit - csv:101207226 584.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00275 Blo-Chr1:3484648 Blo02g00402 Blo-Chr2:4973127 0 dispersed
Blo01g00275 Blo-Chr1:3484648 Blo01g00276 Blo-Chr1:3491730 4.88E-10 tandem
Blo01g00275 Blo-Chr1:3484648 Blo12g00153 Blo-Chr12:10466145 2.09E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1015 Blo01g00275 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001928 2 16 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 6 2 1 1 2 2 1 2 1 2 1 2 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00275 Blo_Chr01 FPKM 5.301021 5.27957 5.327943 6.386714 6.597113 7.797493 7.702009 3.716001 4.121554 3.466093