Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00277 ATGGAAAGGTTGTTTCTGATGAAAGAGGAACGCAATGCTGCTCCAACTACTTGGAATTTCTCATCGTTTGACGTGGATTACCTGAGTTCTGAGTCTGACCAGCTTCAGAGCTGTTTTCCGGGTGTGGATTGGGAAAATTTGGTGGAACTGTGCGATCCTCTTGAGTCTGCTTTGAGCTCCATTGTTTCTTCTCCGGCGGCGTCCAATGTCGGCGCTAGCTTTAACTCCGCTGGAGATAAACTAATTGTTAGGGAACTAATAGGGAGGCTGGAAAGCAATTGGGAAGTCGGCGACATTCCAACGCCGGAGTACATTGGGGGAAAGAAGGACAATACTGATCCCTCGTATTACAGTACGCCATTAAATTCTCCTCCGAAGCTCAATCTGTCAGTGGAAATTCCAGAAGCCAAAGGTCATTCGTCATTTTCTGATAGCAATGTTCTAACCAATCCAAGCTTGAAGCCATTTTCTTCGGACCTTGAGTTTGCCGCGAGAGCTGCTATGTTTTCATCCTTAGCCGCTAGAAATGGAGGTCTACGTCAACTGATTCCAACGATTGGTGATATCGAATCTCAAATTGCAGTTCAAGAGCACAGAAAAAGCTCCATTCAGTGTACAACTTCACTTCCTAGTAAGAAATCCAGAAAGTTGTCGAGATCTCTTGGCCGTGAAAATGCAGAGATAGGCGACTCTCGAGAGGGATCTTCTTTGTCTGAGCAAATCTCCGGCTGCGCATCGGCCTTGAAAGAGAAAGATGAAGTTGATCTGAACGACAGAAAAAGAAAATTGATTTCAAATGTTCACTCAGAAGAAAAACCACCTCCTCCCTCTGCTAAAATCGCCAAGATTGAAGGTAGAAACGACGGACCAAATCCAGGCGAAGCTTCTGCACAAAAAAATGATGGAACAAAGACGAAGACAGAAACAAATGAGGGTAAAAAATCAGGAGAAGATGAAAATCAGAAGAATACAAAGCTTCCAGAGCCTCCAAAGGATTATATCCATGTCAGAGCAAGAAGAGGTCAAGCTACAGACAGCCATAGCCTTGCAGAGAGAGTTAGAAGAGAAAAAATCAGCGAAAGGATGAAGTTTCTTCAAGATCTTGTCCCTGGTTGCAATAAGGTGACAGGAAAAGCAGTGATGCTTGATGAAATTATAAATTATGTTCAATCATTACAACGCCAGGTTGAGTTTCTTTCAATGAAGCTGGCATCAATTCCTCCAAGCATGAATCTGAACATGGAAGCTCTTCTATCGAAAGATATCATTCAATCTTGTGTATCTTTTCAACATATTATAAACCCGCTGGATTCCTCTTCGACGGCATTCAAGTTCGGCTGCCAGAGTGTTCCTTCTGATAGAGAGATCCCATATCCAGTAAACTCTTCAAATGCATTTCTCTGCAGAAACCCAGAGATTCAAACGATTCATCTTGATGGATACAGTAAAGATGATGATCAACAAGTAAAATCACAAATACCCCGTTCTGTATTCCTCTCCACTCCTCTCTCTTCAGTAATCTCTAAAGGCCATTTTTTAACCGTTTTCAGGTCTTATCATGCTGGGAAGATGACCTTCAAAGTGTAG 1587 42.72 MERLFLMKEERNAAPTTWNFSSFDVDYLSSESDQLQSCFPGVDWENLVELCDPLESALSSIVSSPAASNVGASFNSAGDKLIVRELIGRLESNWEVGDIPTPEYIGGKKDNTDPSYYSTPLNSPPKLNLSVEIPEAKGHSSFSDSNVLTNPSLKPFSSDLEFAARAAMFSSLAARNGGLRQLIPTIGDIESQIAVQEHRKSSIQCTTSLPSKKSRKLSRSLGRENAEIGDSREGSSLSEQISGCASALKEKDEVDLNDRKRKLISNVHSEEKPPPPSAKIAKIEGRNDGPNPGEASAQKNDGTKTKTETNEGKKSGEDENQKNTKLPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASIPPSMNLNMEALLSKDIIQSCVSFQHIINPLDSSSTAFKFGCQSVPSDREIPYPVNSSNAFLCRNPEIQTIHLDGYSKDDDQQVKSQIPRSVFLSTPLSSVISKGHFLTVFRSYHAGKMTFKV 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3498291 3500341 + BLOR00277 Blo01g00277 54717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00277 528 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 409 IPR036638 GO:0046983
Blo01g00277 528 SMART finulus 348 398 IPR011598 GO:0046983
Blo01g00277 528 MobiDBLite consensus disorder prediction 263 332 - -
Blo01g00277 528 MobiDBLite consensus disorder prediction 204 244 - -
Blo01g00277 528 Pfam Helix-loop-helix DNA-binding domain 346 393 IPR011598 GO:0046983
Blo01g00277 528 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 20 447 IPR024097 GO:0006355
Blo01g00277 528 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 392 IPR011598 GO:0046983
Blo01g00277 528 PANTHER BHLH TRANSCRIPTION FACTOR 20 447 - -
Blo01g00277 528 Gene3D - 339 411 IPR036638 GO:0046983
Blo01g00277 528 MobiDBLite consensus disorder prediction 304 332 - -
Blo01g00277 528 CDD bHLH_AtBPE_like 332 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00277 Blo-Chr1:3498291 Blo07g00067 Blo-Chr7:975466 2.25E-114 dispersed
Blo01g00277 Blo-Chr1:3498291 Blo12g00154 Blo-Chr12:10470222 1.48E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11822 PF00010 HLH 7.50E-06 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00277 - - pop:7462032 389.037