Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00279 ATGTCGGTTTCATCGACTGCCTTTTCTCCGGACCACCTCTCACCGTTAGACCAACTCCGCTACGTCCATTGCAACTTCTGCGACACTGTCCTGGCGGTGAGTGTTCCGTGCAGTAGCTTGTTCAAGACTGTTACCGTTCGATGTGGTCACTGCACCAATCTTCTGTCTGTGAACATGCGGGGCCTTCTTCTTCCTGCTTCTAGCCAGCTTCATCAGCTTGGGCATTCTTTCTTCTCCCCTCAAAATCTTCTGGATGAGATGAGAAATCAGCCTTCAAATGTAATCCTGAATCTGCCAAAGCCGACAGATCAGCCGACTATGCCGATGATTCCAGGAGCTGAACAACTTCCAAGACCTCCAGTTGTTAACAGACCTCCGGAGAAGAGACAAAGAGTCCCATCTGCCTACAATCGCTTCATCAAGGACGAGATCCAACGAATCAAAGCTCGCAATCCTGATATAAGCCACAGAGAGGCTTTCAGTGCGGCTGCAAAGAATTGGGCCCACTTCCCACACATTCACTTCGGACTTATCCCTGATCAACACGTGAAGAAACCAAACATATGTCAGCAGGATGGAGAAAATGTGCTAATGAAAGATGCTATGTTTGCTCCAGCAAATGTGGGTGTGTCCCCTTTTTAA 642 48.44 MSVSSTAFSPDHLSPLDQLRYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPASSQLHQLGHSFFSPQNLLDEMRNQPSNVILNLPKPTDQPTMPMIPGAEQLPRPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKARNPDISHREAFSAAAKNWAHFPHIHFGLIPDQHVKKPNICQQDGENVLMKDAMFAPANVGVSPF 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3523615 3525508 + BLOR00279 Blo01g00279 54719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00279 213 PANTHER PROTEIN YABBY 4 1 211 - -
Blo01g00279 213 PANTHER PROTEIN YABBY 6-RELATED 1 211 IPR006780 GO:0007275
Blo01g00279 213 MobiDBLite consensus disorder prediction 110 131 - -
Blo01g00279 213 Pfam YABBY protein 16 177 IPR006780 GO:0007275
Blo01g00279 213 Gene3D High mobility group box domain 121 172 IPR036910 -
Blo01g00279 213 SUPERFAMILY HMG-box 120 170 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00279 Blo-Chr1:3523615 Blo03g00407 Blo-Chr3:11414194 1.23E-98 dispersed
Blo01g00279 Blo-Chr1:3523615 Blo12g00165 Blo-Chr12:10789311 3.62E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11823 PF04690 YABBY 7.40E-72 CL0114 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00279 K25796 - sind:105171079 352.829