Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00279 ATGTCGGTTTCATCGACTGCCTTTTCTCCGGACCACCTCTCACCGTTAGACCAACTCCGCTACGTCCATTGCAACTTCTGCGACACTGTCCTGGCGGTGAGTGTTCCGTGCAGTAGCTTGTTCAAGACTGTTACCGTTCGATGTGGTCACTGCACCAATCTTCTGTCTGTGAACATGCGGGGCCTTCTTCTTCCTGCTTCTAGCCAGCTTCATCAGCTTGGGCATTCTTTCTTCTCCCCTCAAAATCTTCTGGATGAGATGAGAAATCAGCCTTCAAATGTAATCCTGAATCTGCCAAAGCCGACAGATCAGCCGACTATGCCGATGATTCCAGGAGCTGAACAACTTCCAAGACCTCCAGTTGTTAACAGACCTCCGGAGAAGAGACAAAGAGTCCCATCTGCCTACAATCGCTTCATCAAGGACGAGATCCAACGAATCAAAGCTCGCAATCCTGATATAAGCCACAGAGAGGCTTTCAGTGCGGCTGCAAAGAATTGGGCCCACTTCCCACACATTCACTTCGGACTTATCCCTGATCAACACGTGAAGAAACCAAACATATGTCAGCAGGATGGAGAAAATGTGCTAATGAAAGATGCTATGTTTGCTCCAGCAAATGTGGGTGTGTCCCCTTTTTAA 642 48.44 MSVSSTAFSPDHLSPLDQLRYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPASSQLHQLGHSFFSPQNLLDEMRNQPSNVILNLPKPTDQPTMPMIPGAEQLPRPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKARNPDISHREAFSAAAKNWAHFPHIHFGLIPDQHVKKPNICQQDGENVLMKDAMFAPANVGVSPF 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3523615 3525508 + BLOR00279 Blo01g00279 54719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00279 213 PANTHER PROTEIN YABBY 4 1 211 - -
Blo01g00279 213 PANTHER PROTEIN YABBY 6-RELATED 1 211 IPR006780 GO:0007275
Blo01g00279 213 MobiDBLite consensus disorder prediction 110 131 - -
Blo01g00279 213 Pfam YABBY protein 16 177 IPR006780 GO:0007275
Blo01g00279 213 Gene3D High mobility group box domain 121 172 IPR036910 -
Blo01g00279 213 SUPERFAMILY HMG-box 120 170 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00279 K25796 YAB; plant-specific transcription factor YABBY family protein - sind:105171079 352.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00279 Blo-Chr1:3523615 Blo03g00407 Blo-Chr3:11414194 1.23E-98 dispersed
Blo01g00279 Blo-Chr1:3523615 Blo12g00165 Blo-Chr12:10789311 3.62E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g443 Blo01g00279 . . Bda08g00564 . Bpe05g01079 . . . . Cma06g00763 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo06g00784 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g01078 . 2 177 C2C2-YABBY Transcription Factor Family AT1G69180 53.6 1.1e-44 176.8
Blo01g00279 . 59 213 C2C2-YABBY Transcription Factor Family AT2G45190 63.5 4.5e-50 194.5
Blo12g00165 . 59 190 C2C2-YABBY Transcription Factor Family AT2G45190 65.7 4.5e-42 167.9
Blo02g01054 CCT 64 219 C2C2-YABBY Transcription Factor Family AT2G45190 54.2 6.5e-41 164.1
Blo03g00407 CCT 66 220 C2C2-YABBY Transcription Factor Family AT2G45190 56.0 1.9e-40 162.5
Blo02g01054 CCT 21 193 C2C2-YABBY Transcription Factor Family AT1G08465 56.1 7.0e-44 174.1
Blo14g00771 . 11 169 C2C2-YABBY Transcription Factor Family AT1G08465 57.9 2.2e-42 169.1
Blo03g00407 CCT 23 197 C2C2-YABBY Transcription Factor Family AT1G08465 55.6 2.9e-42 168.7
Blo01g00625 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 53.1 3.8e-42 168.3
Blo12g00165 . 17 189 C2C2-YABBY Transcription Factor Family AT1G08465 54.0 8.0e-40 160.6
Blo01g00279 . 17 190 C2C2-YABBY Transcription Factor Family AT1G08465 53.7 1.8e-39 159.5
Blo01g00279 . 27 211 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 8.2e-49 190.7
Blo03g00407 CCT 33 219 C2C2-YABBY Transcription Factor Family AT4G00180 53.4 9.0e-48 187.2
Blo12g00165 . 27 190 C2C2-YABBY Transcription Factor Family AT4G00180 56.7 7.2e-45 177.6
Blo02g01054 CCT 31 217 C2C2-YABBY Transcription Factor Family AT4G00180 51.7 9.4e-45 177.2
Blo11g00921 . 3 156 C2C2-YABBY Transcription Factor Family AT1G23420 66.5 2.2e-43 172.9
Blo01g00625 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 75.0 1.7e-65 245.7
Blo14g00771 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 70.1 1.1e-59 226.5
Blo16g00898 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 65.9 5.6e-53 204.1
Blo02g01054 CCT 21 191 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 4.8e-44 174.5
Blo03g00407 CCT 23 185 C2C2-YABBY Transcription Factor Family AT2G26580 56.4 2.4e-43 172.2
Blo01g00279 . 17 182 C2C2-YABBY Transcription Factor Family AT2G26580 54.8 7.6e-42 167.2
Blo12g00165 . 17 181 C2C2-YABBY Transcription Factor Family AT2G26580 53.3 1.1e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11823 PF04690 YABBY 7.40E-72 CL0114 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00279 Blo_Chr01 FPKM 3.263573 3.39377 8.086457 6.205558 0.546032 0.0 0.223892 0.86232 1.03457 1.213349