Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00297 ATGGGCTTAAGGCCCAACATTTCAGTTTCTCCTATCCTTCTAGCGACTGCGAAGCCCATAAAATCTCAAAACCCTATAAACCACTCCCATCCAATAAATTCCTTATTTCTGAACTTCATTTCCACAGTCCCAATGGCTTCTTCAACCCTAGCTCGAGGTATGGCGACCGCCCTTTCACTGGCTCGCTACCCATCCCCATCTCTGTTCTGTCCGAATCGTCTTTTCTCCTCTTCAAGTTCTGTAACTCAATGTCCTTCTATACCTACTCTCATTCTTGGCCGTCGATCTCTTGCTCCTCTTTCCCATGCTGTTCGGTCTATCGCTCCTGGCCGTGCTTCCCGGTTCACTCCTGTGCGATGCCGAGTCAATCGATCTGGAAACTCGGCGTACTCGCCGCTTAACTCTGGTTCCAATTTCAGCGACCGTCCTCCTACGGAAATGGCTCCGTTGTTCCCTGGTTGTGACTACGAGCACTGGCTTATTGTTATGGATAAGCCTGGTGGGGAGAATGCTACCAAGCAGCAAATGATTGATTGCTACATTCAGACCCTAGCTAAAGTCGTCGGGGGTGAGGAGGAAGCGAAGAAGAAAATATACAATGTTTCTTGCGAGAGATATTTCGGGTTTGGCTGTGAGATTGATGAGGAAACCTCGAATAAGCTGGAAGGGTTGCCTGGTGTTCTGTTTGTTCTTCCTGATTCATATGTTGACGCCGAGTATAAGGATTACGGAGCTGAGTTGTTCGTGAATGGGGAGATCGTACAGAGGTCACCTGAAAGACAGAGGAGGGTGGAGCCACAGCCCCAAAGGGCTCAGGACAGACCAAGAGTTTTGAGTGATATTTCAATCCCCATTGCTGCTTCGGCTTCCCCTCCTCCTTCTTCTGTCGGAGCGGCTCTCTTTGTCATCGGGATCTCTCCAAGGCAGATGAGCATACATAGGCACTCAAAAGAAAAGTATGGGGAAAATATTGGTCATTCTTGTTTTGACACCGCGGAAGAAAGTGCGGCTAGGACAAGGCCTTTCAGCTATGAAGAGATCATGGTTAGAAGGAAAAACAAAGGATTGACTGAAAACGTGGAATGTGGGGGAGCAGAACTAGGGAATACGCCTAAGGAAGTCAGGGTTGAGAATCTTCCTGATCATTATACAGCTGAAGGGGGCCACATACGCGACAAAAGTTCTTCCCTTGATTTTGAAAATCTTGTTATCAAAGGATCGAGCAAAGATGGTTCTAGAAGGAAGGATGAACATAATTCCAGGAATGATGAAACTGTAATTACAAGAAGAGATAGTAAAGGAGAAAGTCATCCATCACCAATGGTTTTGAAGTCCAAGCTGACCAAAAATACCAAAGAAAAGGAGAGAGGGAAATCTGACCAAATAACATATGAATTGAGAAAAAACGATAAGAGAGCTCAAGATGATTCTGAAAATAGAGCTGACAAGAAACGTAGGGATAGAACACATAGTGATAGACATGGGGATCGGAATAGAGAAAAGTACGCAGACAACAAGAGAAAATATCGCAATGAAGAAGACAATAAAAACAGACATAAAGATGATGGAAAGAGACGAGAAGCTATTAAGCATCATTTTGAAGAATCTAGGTTGAATGAAAGACAGCCAAGAAGCCGAGATGGCCAGAATAAAAGTAGAAGATTGGTATCCGTTTCACCCAAAGGTCACAAATACTCATATAAGATGCTGGGGTTGCATAAGGAATTGTCCTTAAACTCTCATGAAGATAAGTCCGAACAAAGGCATTCTGATGTTCACAGAAACAGAATATCAACTAATGGTTCAAGTAGTTATCGACGACATAGTGGATCAACAAGTGGGCTCGGTGGTTATTCTCCTCGCAAGAGAAGAGTTGATAACTCTATCAAGACACCCCCTCCCCCTCATCGTTCACCTGATAAGAAAAGTGCAAAGTGGGATCTCCCACCAATCGGAAAAGATTGCATATCTTCTGGTTCAGTTCTGTCCTTCCCTCAGTCAGTAAACAATGTGCTAACCTCAGATATATCCAACATAAGCATTGTTGCTCCTTCTCCTTCAACTTCCACAAAATCGATTATGACAGTTTCTACACCTCCTTCAGCCATGAAGGGAAATGCATCTGTTGATTTGATTCAGCTGACTCAAGCTACTCGACCTATGAGGAGGCTTTACATAGAAAATGTACCATCAACGGCAACTGAGAAGGCTCTAATGGAATGCCTTAATAACTTTCTGCTTTCTTCAGGTGTTAATCAGATTGCCGAAACCCAACCCTGCATTAGCTGTAATTTGCACAAGGAAAGGGGTCTTGCCCTTGTGGAGTTTCTTACCTCTGAGGATGCTTCAACAGCTCTTTCTTTTGATGGCAGTTGTTTCGCTGACTCTATTCTCAAAATTCGACGCCCCAAGGACTTTTTTGAGCTGGCTTTACTACTGCCATTTTGTGTTGACTTCACTGGTGAGCCCGAGAAATCTGTTGCTGTAGATACGATAAGCGAAGTTGTTGAGGATTCTCCAAATAAGATATTCATTGGTGGAATCTCAAAGGAACTATCTCCAAAAATGCTTAGGGAGATCATCACTGCGTTTGGAGCTTTGAAGTCCTATCACTTTGTGATCAATGGGCATATAAATCAACCAACTGCTTTCCTTGAGTATGCAGACCACTCCATCACTCTCAAAGCTTGTGCGGGTCTCAATGGTATGAAGGTGGGAGGCCAAGTATTGACTGTTGTTCAAGCATGCCCATATGCATCCTCTTTGGAACGTACTAGTTGTGCACCGTGTTATGACATCCCTGAGCATTCAAAGCCTCTTCTTGAACCACCAACTCCAGTCCTAAAGCTTAAAAACGTGTTTGATCCAGCACAAATGTTGACCCAAACAGAACTAGAAGTGGAAGAAGTTCTTGAAGATATACGTTTGGAATGTTCTAGGTTTGGCGTTGTGAAGTCGGTAAATAATGTCAAGCTCAACCTTAGTTGTGTAATCACCGGAGGAGACACTGATAATATCAACAATGCGGAAACAAACACTTCCGAACAAGACGCTGAACGAACGTCGGATGTGTGCGATGCTGAATTTTCAGTAAATGTGAAAGAGCGTGAAGAACTTGAAGGTGCAACAGATCGAGCAGACTGTATTCACAAGGGCGAACTATCAAATGATCGTGTAACAGACAAATCATATTGTGCTAACCACGTCTCCAATGACATGGCTTCCGCAGATCAACGCTGTGAGAAAGAGTTGACGGAAAATCCATTGGAATCACTTGACCGGAAAGTAACTGAAATTATTCAAACGGATGAGAAATGCTCAGAAAACAAATTGCTACCGAGAGAAGAGCTGATCACAGATATTGAGGTTGATACGGAGGAGGAGGCTAGAGAATGTGAAGAAGACAAGGTGGAAGAGGTATTTGAAGAAGGATCCATCTTTGTAGAGTATAATAGAACCGAAACAAGTTGCATGGCTGCACATTGTTTGCATGGACGGGTTTTTGACGGCCGGATTGTCACCGTTGAGTATGTAAGTCGTGATAAATACCTTGCGAGATTTCCGAAATAA 3570 43.73 MGLRPNISVSPILLATAKPIKSQNPINHSHPINSLFLNFISTVPMASSTLARGMATALSLARYPSPSLFCPNRLFSSSSSVTQCPSIPTLILGRRSLAPLSHAVRSIAPGRASRFTPVRCRVNRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGENATKQQMIDCYIQTLAKVVGGEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDAEYKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRVLSDISIPIAASASPPPSSVGAALFVIGISPRQMSIHRHSKEKYGENIGHSCFDTAEESAARTRPFSYEEIMVRRKNKGLTENVECGGAELGNTPKEVRVENLPDHYTAEGGHIRDKSSSLDFENLVIKGSSKDGSRRKDEHNSRNDETVITRRDSKGESHPSPMVLKSKLTKNTKEKERGKSDQITYELRKNDKRAQDDSENRADKKRRDRTHSDRHGDRNREKYADNKRKYRNEEDNKNRHKDDGKRREAIKHHFEESRLNERQPRSRDGQNKSRRLVSVSPKGHKYSYKMLGLHKELSLNSHEDKSEQRHSDVHRNRISTNGSSSYRRHSGSTSGLGGYSPRKRRVDNSIKTPPPPHRSPDKKSAKWDLPPIGKDCISSGSVLSFPQSVNNVLTSDISNISIVAPSPSTSTKSIMTVSTPPSAMKGNASVDLIQLTQATRPMRRLYIENVPSTATEKALMECLNNFLLSSGVNQIAETQPCISCNLHKERGLALVEFLTSEDASTALSFDGSCFADSILKIRRPKDFFELALLLPFCVDFTGEPEKSVAVDTISEVVEDSPNKIFIGGISKELSPKMLREIITAFGALKSYHFVINGHINQPTAFLEYADHSITLKACAGLNGMKVGGQVLTVVQACPYASSLERTSCAPCYDIPEHSKPLLEPPTPVLKLKNVFDPAQMLTQTELEVEEVLEDIRLECSRFGVVKSVNNVKLNLSCVITGGDTDNINNAETNTSEQDAERTSDVCDAEFSVNVKEREELEGATDRADCIHKGELSNDRVTDKSYCANHVSNDMASADQRCEKELTENPLESLDRKVTEIIQTDEKCSENKLLPREELITDIEVDTEEEARECEEDKVEEVFEEGSIFVEYNRTETSCMAAHCLHGRVFDGRIVTVEYVSRDKYLARFPK 1189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3689233 3699333 - BLOR00297 Blo01g00297 54737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00297 1189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 841 917 IPR000504 GO:0003723
Blo01g00297 1189 SMART rrm1_1 723 801 IPR000504 GO:0003723
Blo01g00297 1189 SMART rrm1_1 842 913 IPR000504 GO:0003723
Blo01g00297 1189 Coils Coil 1123 1143 - -
Blo01g00297 1189 MobiDBLite consensus disorder prediction 579 595 - -
Blo01g00297 1189 Gene3D - 942 1047 IPR012677 -
Blo01g00297 1189 SUPERFAMILY RNA-binding domain, RBD 722 805 IPR035979 GO:0003676
Blo01g00297 1189 Gene3D - 831 890 IPR012677 -
Blo01g00297 1189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 722 805 IPR000504 GO:0003723
Blo01g00297 1189 MobiDBLite consensus disorder prediction 623 648 - -
Blo01g00297 1189 PANTHER RNA-BINDING PROTEIN 313 1186 - -
Blo01g00297 1189 SUPERFAMILY RNA-binding domain, RBD 1138 1182 IPR035979 GO:0003676
Blo01g00297 1189 MobiDBLite consensus disorder prediction 447 551 - -
Blo01g00297 1189 MobiDBLite consensus disorder prediction 405 562 - -
Blo01g00297 1189 MobiDBLite consensus disorder prediction 579 648 - -
Blo01g00297 1189 MobiDBLite consensus disorder prediction 407 437 - -
Blo01g00297 1189 MobiDBLite consensus disorder prediction 596 616 - -
Blo01g00297 1189 Coils Coil 502 522 - -
Blo01g00297 1189 SUPERFAMILY RNA-binding domain, RBD 834 918 IPR035979 GO:0003676
Blo01g00297 1189 Gene3D - 722 912 IPR012677 -
Blo01g00297 1189 Gene3D - 1095 1189 IPR012677 -
Blo01g00297 1189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 843 910 IPR000504 GO:0003723
Blo01g00297 1189 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 313 1186 - -
Blo01g00297 1189 MobiDBLite consensus disorder prediction 257 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00297 K12837 U2AF2; splicing factor U2AF 65 kDa subunit - jre:108991202 672.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00297 Blo-Chr1:3689233 Blo10g00738 Blo-Chr10:23068630 4.39E-36 dispersed
Blo13g00083 Blo-Chr13:1299725 Blo01g00297 Blo-Chr1:3689233 2.88E-16 dispersed
Blo01g00297 Blo-Chr1:3689233 Blo12g00141 Blo-Chr12:9913032 8.34E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g750 Blo01g00297 . . . . . . Bma05g01247 Cmo08g01045 Cmo17g00150 . . . . . . . . . . . . . . Cla06g00680 Cam06g0733 Cec06g0740 Cco06g0749 Clacu06g0725 Cmu06g0709 Cre06g1483 . . . . . Csa02g01043 Chy05g00306 . . . . . Bpe05g01101 . . . Sed04g2009 . . Cma08g01072 Cma17g00150 Car08g00945 Car17g00132 Cpe12g00127 Cpe17g00206 Bhi12g01590 Tan06g2386 Cmetu05g1606 . . . Lcy13g0392 . . . . . . . Lsi09g01218 . . Cme05g00588
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008034 0 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 2 1 1 2 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00297 Blo_Chr01 FPKM 2.178218 1.687427 0.226442 0.0 0.428311 0.455842 0.57261 0.112355 0.199724 0.210425