Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00305 ATGTCGCTTCTCCTTATCAAAACCCTCTTCTTCATCCATCCCAAGACCCCATTTCCACTCCTAAATCTCTCTTCCATGGCTGCCAATTTCAGCTCCTCTCAGTCGCAACCCAAGCCTCGCCTTAAAGGCGTCGTGTTTGACATGGACGGAACCCTGACGGTCCCGGTTATTGATTTTCCGGCGATGTACAGAGCCGTCCTCGGGGACGACGAGTATCGGAGAATCAGAGCCGAACATCCCTGTGGGATTGATATTTTGCACCACATTGAGGGGTGGAGCTCTGAAAAGCAGCAGAAAGCTTACCAAACTATCGCCGATTTCGAGCGGGAGGGGCTTGATCGCCTCCAAATCATGCCTGGTGCAGCCGAGCTTTGTAGCTTTCTCGATTCGAAAAGATTAAGGAGGGGATTAATCACTCGCAATGTTAAGGCGTCGGTCGATCTGTTTCATCAAAGATTTGGGTTGATTTTTTCTCCGGCCCTAAGCAGGGAATATCGGCCTTACAAACCCGACCCAGCTCCACTCCTCCACATTTGTTCGTCGTGGGAAGTTCACCCGAGCGAAGTAATGATGATAGGCGATAGCCTCAAAGACGATGTGCCATGCGGGAAGAGGGCCGGAGCGTTTACATGTTTGCTCGACGAAACGGGGAGGTACAACTCGCCGGAGCATGCCAAGGTGGAATTCCAACCGGATTTTAAGATGAAGAAGAAGAAGCAAAAGACAGTCACAAATTCCGATTCCGCTCTTGACTTGAAGTCCATGATTCATCAGCATTCATCATTTTTCGACAAATTAATTGAACTCATTCCTGCGAAGTTCTATTTTCCTAATGATGATAAGGACAAGCCATGGTTTCAAGGCCTGAGTAAAGCCCAGAAAGCTTCAGCAAAGAAGGAATCGAGGGAAAACATCAAGAAAGCTAGAAGAGATCGTTTAGATCCAGATAAGTCTTCCACAACAACCCTTGATTTACTAAACCAAAAACTGCAAAAGGAGAAAACAGAGGATGAAACTGTTGGTGGTGAAATTGATATTAAACCAATGATGTCTGGACTGGAAGATAATGACAGGAAGGTAACATATGAAGAGCTTCAAGAACGGCTTCATCGGAAACTTGAAGAATTCCGGAAAGATCGAAATCTTGGAACTTCAAACCGAGAAAAGAAAAGAAACGAGAGAAAAGAGAAGATAGGAAATCTAGAGAAGAAACGCAAAAGAGATGATACAAAAGTGGATGCAGGTAATTCAGCTGATAAAACAGAGAAGGATTTAGCTGCAGCTACAAAGGAACTAGCCTTCAGCCATGTTAAACTTGGCAATAATGATGACCATGGAAAGAAGAAGAGAAAACTTTCAAAGTCGAAGCAGCTTGAAATAGCGAGGAAATTACAAGAAGAAAAGAAAGATGCTGAAAAGGGTGAGATGGTCTCGAGAAAACATTCCTGGAATGCAGCAACAAGTAGAGCTGCTGGAATTAAGATTCACGACGATCCAAAGCTCTTGAATAAGAGCATACGGAAGGAGAAAACGAAGCATCAGAAGAATGCCAAAAAATGGAAAGATAGAATGGAAACCACAGAGAAGGAGAAAGCAGAAAAACAGCAAAAGAGATCAGCAAATATAAGTCAGAGGAGTCAAGACAAGAAAATGAGACGAATTGCTAAAAGGGAGAAGAAGCTTCTTCGGCCTGGCTTTGAAGGTCGCAAGGAAGGATTTATCAACCCAGCCTCCTGA 1737 44.33 MSLLLIKTLFFIHPKTPFPLLNLSSMAANFSSSQSQPKPRLKGVVFDMDGTLTVPVIDFPAMYRAVLGDDEYRRIRAEHPCGIDILHHIEGWSSEKQQKAYQTIADFEREGLDRLQIMPGAAELCSFLDSKRLRRGLITRNVKASVDLFHQRFGLIFSPALSREYRPYKPDPAPLLHICSSWEVHPSEVMMIGDSLKDDVPCGKRAGAFTCLLDETGRYNSPEHAKVEFQPDFKMKKKKQKTVTNSDSALDLKSMIHQHSSFFDKLIELIPAKFYFPNDDKDKPWFQGLSKAQKASAKKESRENIKKARRDRLDPDKSSTTTLDLLNQKLQKEKTEDETVGGEIDIKPMMSGLEDNDRKVTYEELQERLHRKLEEFRKDRNLGTSNREKKRNERKEKIGNLEKKRKRDDTKVDAGNSADKTEKDLAAATKELAFSHVKLGNNDDHGKKKRKLSKSKQLEIARKLQEEKKDAEKGEMVSRKHSWNAATSRAAGIKIHDDPKLLNKSIRKEKTKHQKNAKKWKDRMETTEKEKAEKQQKRSANISQRSQDKKMRRIAKREKKLLRPGFEGRKEGFINPAS 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3756529 3761343 - BLOR00305 Blo01g00305 54745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00305 578 MobiDBLite consensus disorder prediction 518 551 - -
Blo01g00305 578 MobiDBLite consensus disorder prediction 376 578 - -
Blo01g00305 578 Pfam Surfeit locus protein 6 373 553 IPR029190 -
Blo01g00305 578 Coils Coil 387 407 - -
Blo01g00305 578 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 44 207 IPR006439 -
Blo01g00305 578 Coils Coil 503 537 - -
Blo01g00305 578 Pfam 60S ribosome biogenesis protein Rrp14 256 316 IPR029188 -
Blo01g00305 578 PANTHER 4-NITROPHENYLPHOSPHATASE-RELATED 24 237 - -
Blo01g00305 578 Pfam Haloacid dehalogenase-like hydrolase 44 210 IPR041492 -
Blo01g00305 578 Coils Coil 359 382 - -
Blo01g00305 578 SUPERFAMILY HAD-like 36 214 IPR036412 -
Blo01g00305 578 Gene3D - 44 228 IPR023214 -
Blo01g00305 578 PANTHER OS02G0816100 PROTEIN 24 237 - -
Blo01g00305 578 MobiDBLite consensus disorder prediction 376 429 - -
Blo01g00305 578 CDD HAD_like 121 213 - -
Blo01g00305 578 MobiDBLite consensus disorder prediction 292 358 - -
Blo01g00305 578 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 41 222 - -
Blo01g00305 578 MobiDBLite consensus disorder prediction 457 479 - -
Blo01g00305 578 Gene3D - 54 115 - -
Blo01g00305 578 MobiDBLite consensus disorder prediction 329 343 - -
Blo01g00305 578 MobiDBLite consensus disorder prediction 295 318 - -
Blo01g00305 578 SFLD Haloacid Dehalogenase 41 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00305 - - - twl:120012098 424.861
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g802 Blo01g00305 . . Bda08g00009 Bpe04g00978 . Bma04g01025 Bma05g01260 . Cmo17g00131 . . . . . . . . . . . . . . Cla06g00706 Cam06g0756 Cec06g0762 Cco06g0774 Clacu06g0747 Cmu06g0730 Cre06g1507 Cone14ag0191 Cone15ag0201 . . . Csa02g01018 Chy05g00282 . . . . . Bpe05g01114 . . . . . . . Cma17g00129 . Car17g00115 Cpe12g00113 . . . . . . . . . . . . . . . Lsi09g01186 . . Cme05g00627
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006077 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 39