Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00306 ATGTTTTGCCAAAAACCCGACCTTTTTCATGTCTTCCCTGAGTTTGTGTACCCGCGAACTGAGGCTTTCTTCTTCGCTTCATCCATGGCCGCCGAGCAAAAGTCTGCGTTTTCTTCTCCAATGAAGATGTGTAAGAGGAAGAGGAAACGAACCCATATGGATCCCGAACTGGAACGCCTTGATTCGCTGGCCTGGAAATCCTCTTTTCCTGCCAACGATCCCTTTTCGATGTTCATTGGTTCTAACGAACTGGAAGGAGGTTTTCTTTCATTAGAAGAGATTGACGAGGCCCAATATGGCTTGGAAGTTCCTGAAATTGTAATTGGTGGCAGTAAATTTGAAAAAACTACTATGATAACGGAGAAACAGGACAATAGCAATGTTAGTGGCAATGAATGCGAGGGTGGCGATAAGAGTCAAGGTAAAGTGGAAGAGAAAGTGGAGCGAGAAGAGAATGTGGAGACTACGAAAAAGAGGAAGAAGAATAATAATTTAAACAAGATCCCAGAAGAGGAGAAACTAGTGGGTAGAGATGTACATGGCTGTAGTAGCAATGAGACTGAGGTAAAGTTTGAAGAAAAAATGGCTGACGAAAAGAATGCCGAGAAAAGAAAGAAGAGAAAGAAAAAGAAGATGAATAAGGGGATGGAGAAAACTTACGAGATTTATCTTTCCACGATTAACAAAATAAAGAATGAATTTGAAGGGAAGCCTGTGGATGAAACTGAATTTTATGCATGGAACGAGTTGAGACTCCATCCTCTGCTTATGAACTCAATCTACAGACTTGGATTCAAGGAACCCACCCTGATACAGAAAGCTTGCATTCCCGCTGCTGCTCACCAGGGGAAGGATGTTGTTGGTGCGGCAGAGACTGGATCTGGAAAGACACTAGCTTTTGGGCTGCCGATTTTGCAACGGCTCTTGGAGGAACAAGAAAAGGCTGGCAGAATTAAGGAAGGAAAGGAAGAAGAAAAAGATGATAATGCTTTGAGAGGCTTACGTGCTCTTATAATTACTCCAACAAGGGAACTAGCTCTTCAGGTCACTGATCATCTCAAGGCAGTTGCAGAGGGCACAAATACTAGAGTAGTTCCTATTGTTGGTGGGATGTCAACACAAAAACAGGAAAGACTTTTAAGATCAAGACCTGCTATTATTGTTGGAACTCCGGGGAGGCTCTGGGAACTTATGTCTGGAGGAGAAAAGCATCTTGTTGAGGCAAGAACTGCACGATTCAGAATTAAAATTAAGCATTTAACTTCGTTTCGTACAACATACTCTATCTTTTCCTTGATGTTAGCTTCTGGTGTGTCTATTGTTTACGGAATGGAACAGGGTTTAGTTGCTCAATTTAATACGGATGAGGCTGATCGAATGATAGAAAATGGGCATTTTCATCAGTTGCAATCCATAATTGACATGCTTCCCAGTACTAATGGCTCTGTTGAAGGCAATTCTCAAAGTTTAGATAATGGCGGGACAACCATACGAAGAAAGAAAAGACAAACATTTGTTTTTTCTGCCACCTTATCCCTTTCTTCTGATTTTCGTAAGAAGCTAAAACGTGGATCAGATAGATCAAAGCAATCAGGCTCTGATGATCTGAATTCTATTGAAGCCCTTTCTGAGCGAGCTGGAATGAGAGATAATGTTGCTATCATTGATCTGACGAATGCATCAATTTTAGTGCGTAAGCTTGAAGAATCGTTTATAGAATGCAGGGAAGAAGATAAAGATGCCTATTTGTATTACATTCTGAGCGTTCATGGGCAAGGCCGCACAATAGTTTTTTGTACATCGATTGCAGCTTTGCGGCGGGTTGCTGCCCTCTTGACCATCCTTGGCGTAAATGCTTACACTCTTCATGCTCAGAAGCAGCAAAGATCTCGTTTAAAAGCAATGGATCGTTTTCGTTCCAGTGAAAATGGTACACTTATTGCTACAGATGTTGCAGCAAGAGGCCTTGATATTCCTGGTGTTCGTACTGTTATTCACTACCAACTTCCACATTCGGCAGAAGTTTATGTTCATAGAAGTGGGAGAACTGCTAGAGCTTCAGCTGATGGGTGCAGCATTACACTAATCTCCCCAAATGAAACTTCCAAATTTGCTTCATTGTGCAAATCATTCTCTAAGGAAAGTATTCGGCAATTCCCTCTTGATCATTCATACATTCCGGGGATTATGAAACGTTTATCGCTTGCCTGCCAGATTGACAAAATCTTGAGAAAGAGCTCTCAGGAGAAGACAAGGAAAAGCTGGTTGGAAAAAAATGCGGAATCAGTGGAATTTGACGTTGACAAAGATGACAGTGAGGAAGAAACAGTGAACAATCATAAGCAAAGGAAGGCAGTCTCCATGCAATTAAAGAACTTACAGCAGGAGCTGAATAATCTCCTTTTGCGTCCTCTTCAACCAGAATCGTTTTCACATCGTTATTTGGCCGGGGCTGGCGTTTCTCCATTACTACAAGGCCAATTTGAAGAACTGGCTCGGCTAAAATTTGGTGGCGGGAATGCGGGAGACAAGAAAAGAAAGAAATTAATGGTTATTGGTCAGGATTGTGTCGAACCGATCGAAGCACTCAAAAGCTCCCATCTTCAGGTCTGCGGGATCAGCGAAGAAGACAGAGAAAGGAAAGAAAGGGGAAGCACGAGGAAGATGACTGACAAGATTACTATTAAATTTTCTGGAACTCAAGGTGCTATTACCGGTGTCGGGCTGTCAATAGGCTACTCCATGAAAGTTGACAAATCTGCCGGATTTGTTGTGATTTCAGCTGCTGCAGGAGGTCCTGCAAATAGAGCTGGCATTTTGTCTGGCGATATTATTTTGGCAATCGATGATACAAGTACAAAAGTCATGAGTATATACGATGCAGCAGAGCGGTTGCAGGGACCAGAGGGAAGTTCAGTGCAATTGACTGTTCGTTCTGGACCGGATATAAAGCAGTTAGCTTTGTTACGGGAGAAAGTTTCATTAAATCCAGTGAAGTCTAGACTTTGTGAGATGCCTGGTTTGGGGGAGGAATCTCCTAAGATTGGTTATATTAAGCTGACAACATTCAACCAAAAAGCAAGTGGTGCTGTCAAGAAAGCTATTGACACTTTAAGGAGCAGCAAGGTCAATGCCTTTGTACTGGACCTTCGAGATAATAGCGGTGGTCTTTTTCCAGAAGGAGTTGAGATTGCCAAGATTTGGTTGGACAAAGGTGTCATTGTATATATTTGCGATGGCCAAGGTGTTCGAGATATTTATGACACTGACGGAAGCAATGTAGTGGCTGCTACAGAACCTCTGGCTGTGCTGGTGAACAAAGGAACCGCAAGTGCAAGTGAAATACTTGCTGGTGCGCTGAAAGACAACAAGCGTGCTGTGTTGTTTGGGGAGCCGACATACGGGAAAGGAAAGATTCAATCAGTTTTCGAGCTTTCGGATGGCTCAGGGCTAGCTGTCACAGTCGCTCGTTATGAAACACCTGCTCATATCGACATTGATAAGGTAGGTGTAATTCCGGACCATCCTCTTCCGGCATCATTCCCTAAGGATGAAGATAGTTTCTGCAGCTGCATAAAAGACCCTTCAGCCGATTGCTACGTCAACAGAGCTCAACTATTCTCAAGATGA 3630 42.87 MFCQKPDLFHVFPEFVYPRTEAFFFASSMAAEQKSAFSSPMKMCKRKRKRTHMDPELERLDSLAWKSSFPANDPFSMFIGSNELEGGFLSLEEIDEAQYGLEVPEIVIGGSKFEKTTMITEKQDNSNVSGNECEGGDKSQGKVEEKVEREENVETTKKRKKNNNLNKIPEEEKLVGRDVHGCSSNETEVKFEEKMADEKNAEKRKKRKKKKMNKGMEKTYEIYLSTINKIKNEFEGKPVDETEFYAWNELRLHPLLMNSIYRLGFKEPTLIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRLLEEQEKAGRIKEGKEEEKDDNALRGLRALIITPTRELALQVTDHLKAVAEGTNTRVVPIVGGMSTQKQERLLRSRPAIIVGTPGRLWELMSGGEKHLVEARTARFRIKIKHLTSFRTTYSIFSLMLASGVSIVYGMEQGLVAQFNTDEADRMIENGHFHQLQSIIDMLPSTNGSVEGNSQSLDNGGTTIRRKKRQTFVFSATLSLSSDFRKKLKRGSDRSKQSGSDDLNSIEALSERAGMRDNVAIIDLTNASILVRKLEESFIECREEDKDAYLYYILSVHGQGRTIVFCTSIAALRRVAALLTILGVNAYTLHAQKQQRSRLKAMDRFRSSENGTLIATDVAARGLDIPGVRTVIHYQLPHSAEVYVHRSGRTARASADGCSITLISPNETSKFASLCKSFSKESIRQFPLDHSYIPGIMKRLSLACQIDKILRKSSQEKTRKSWLEKNAESVEFDVDKDDSEEETVNNHKQRKAVSMQLKNLQQELNNLLLRPLQPESFSHRYLAGAGVSPLLQGQFEELARLKFGGGNAGDKKRKKLMVIGQDCVEPIEALKSSHLQVCGISEEDRERKERGSTRKMTDKITIKFSGTQGAITGVGLSIGYSMKVDKSAGFVVISAAAGGPANRAGILSGDIILAIDDTSTKVMSIYDAAERLQGPEGSSVQLTVRSGPDIKQLALLREKVSLNPVKSRLCEMPGLGEESPKIGYIKLTTFNQKASGAVKKAIDTLRSSKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDGQGVRDIYDTDGSNVVAATEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKGKIQSVFELSDGSGLAVTVARYETPAHIDIDKVGVIPDHPLPASFPKDEDSFCSCIKDPSADCYVNRAQLFSR 1209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3761681 3773772 + BLOR00306 Blo01g00306 54746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00306 1209 MobiDBLite consensus disorder prediction 123 175 - -
Blo01g00306 1209 SMART pdz_new 905 981 IPR001478 GO:0005515
Blo01g00306 1209 Pfam Peptidase family S41 1014 1175 IPR005151 GO:0006508|GO:0008236
Blo01g00306 1209 PANTHER TAIL-SPECIFIC PROTEASE 896 1202 - -
Blo01g00306 1209 SUPERFAMILY PDZ domain-like 896 995 IPR036034 GO:0005515
Blo01g00306 1209 Coils Coil 191 211 - -
Blo01g00306 1209 ProSiteProfiles PDZ domain profile. 892 966 IPR001478 GO:0005515
Blo01g00306 1209 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 566 727 IPR001650 -
Blo01g00306 1209 Pfam PDZ domain 925 978 IPR041489 -
Blo01g00306 1209 PANTHER CARBOXYL-TERMINAL-PROCESSING PEPTIDASE 2, CHLOROPLASTIC 896 1202 - -
Blo01g00306 1209 TIGRFAM prc: C-terminal processing peptidase 899 1178 IPR004447 GO:0006508|GO:0008236
Blo01g00306 1209 Gene3D - 559 801 IPR027417 -
Blo01g00306 1209 SMART ultradead3 264 539 IPR014001 -
Blo01g00306 1209 MobiDBLite consensus disorder prediction 191 212 - -
Blo01g00306 1209 Pfam DEAD/DEAH box helicase 269 402 IPR011545 GO:0003676|GO:0005524
Blo01g00306 1209 Coils Coil 783 803 - -
Blo01g00306 1209 Pfam Helicase conserved C-terminal domain 578 686 IPR001650 -
Blo01g00306 1209 Gene3D - 898 1153 - -
Blo01g00306 1209 Coils Coil 305 325 - -
Blo01g00306 1209 CDD Peptidase_S41_CPP 1013 1178 IPR004447 GO:0006508|GO:0008236
Blo01g00306 1209 SMART tsp_4 980 1178 IPR005151 GO:0006508|GO:0008236
Blo01g00306 1209 Gene3D - 194 524 IPR027417 -
Blo01g00306 1209 CDD PDZ_CTP_protease 904 992 - -
Blo01g00306 1209 Gene3D - 996 1175 - -
Blo01g00306 1209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 703 IPR027417 -
Blo01g00306 1209 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 245 273 IPR014014 GO:0003724
Blo01g00306 1209 SUPERFAMILY ClpP/crotonase 1008 1182 IPR029045 -
Blo01g00306 1209 Gene3D - 905 995 IPR036034 GO:0005515
Blo01g00306 1209 CDD SF2_C_DEAD 567 696 - -
Blo01g00306 1209 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 277 529 IPR014001 -
Blo01g00306 1209 MobiDBLite consensus disorder prediction 137 175 - -
Blo01g00306 1209 CDD DEADc_DDX24 256 556 - -
Blo01g00306 1209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 368 IPR027417 -
Blo01g00306 1209 SMART helicmild6 606 687 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00306 K14805 DDX24, MAK5; ATP-dependent RNA helicase DDX24/MAK5 [EC:3.6.4.13] - zju:107422736 957.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00306 Blo-Chr1:3761681 Blo08g00257 Blo-Chr8:3271493 3.33E-55 dispersed
Blo11g00254 Blo-Chr11:2028446 Blo01g00306 Blo-Chr1:3761681 2.38E-31 dispersed
Blo01g00306 Blo-Chr1:3761681 Blo03g01012 Blo-Chr3:36418100 2.38E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g808 Blo01g00306 . . Bda08g00011 . . . Bma05g01262 Cmo08g01023 . . . . . . . . . . . . . . . Cla06g00708 Cam06g0758 Cec06g0764 Cco06g0776 Clacu06g0749 Cmu06g0732 Cre06g1509 . . . . . Csa02g01016 Chy05g00280 . . . . . Bpe05g01117 . . . . . . Cma08g01052 . Car08g00929 . . Cpe17g00224 . . . . . . . . . . . . . . Lsi09g01183 . . Cme05g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011338 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00306 Blo_Chr01 FPKM 1.700528 1.811781 2.562763 2.25769 1.42537 0.718453 0.460464 16.070904 15.882928 14.783652