Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00311 ATGGCGGATGTGAAGCTACACGGAAAATGGACTAGTCCATATAGTGCCAGAGTGAAATGGGCTCTGGCGCTCAAAGGCGTACCTTTTGACTACGTAGAAGAAGATCTCGCCAATAAAAGCTCTTTGCTTCTCAAGTATAACCCTGTTTACAAGAAGATCCCTGTGCTCGTTCATGGCGAAAATCCACTCTGCGAGTCCATGATAATACTCGAGTACATCGACGAGACCTGGCCTCACAATCCTTTGCTTCCCATTGACCCTCACGATAGAGCCGTCGCTCGATTCTGGATCAAATTTGTAGAAGAAATGCACCCTAAAATTTGGACGATGTTCACGACCAAAGGCGAAGAACAAGAGATAGCGAAAAAGGAGAGCTTCGAGAGCCTGAAAATCATAGAAGAGCATTACCTCACCGGCGGAAAGAAGTTCTTCGGCGGAGACAATATTGGAATGGTGGACTTAGCGATGGGAGGGATTTCAGTATGGCTTCCCGTGTTCGAGGAAGTGCTGGGATTCCAACTCATTTCAGCTTCTTCGTTCCCTAAACTGAAGGCCTGGAGCAAGAACTTCAAAGAGGTCACTGAAATTAAAGAAAACCTGCCTGATCATGAAGCATTCCTAGGGTTTTTCAAGCATAAGCGTCTACTTCGAGATCCACTGAAGGTTTTTGGTTCTGATATAATGTTGATGATTCTTCGTAATCTTCACGCACGCAGCGTGGCACTCTCTCTCCTTGTTTCTCACGCATGGTACGACGTCGCTTCTAGCGACCGGCTCTGGAGCTCAATGTGTGAGGAGCTGTGGCTCAGAAAAGCTCACATACCGCGCCTATCACGTAGCAACCGGTTTTCGAAGTTGGCTGCTTATTCGTTTTCAATAAAGGACAGCAAACGTACATGCATCACAAAGGAGGATCTATGCGATCATGTTTGGGAGTTTCATTTCAATTCGGTTGCTCCTGAATACTGGAGAAATCTCGATCCCTATTGGAAGGGTACGAGCCCTCGAATGCGCCGATACTTCCACAAAGACGGGAGTCAAACTGCCGATCCCGACGATCAAGTATGGGGAGGGCATGAATGTTGTTATTCGATCGTCACTACTCGTCGAGTAAGCGACGGGAATATCAGGAAACACTATGTTAGGATAAATCGATGGCCGATAATGTCGGTATCGAGAAAGTCGGATTGGAGCTGGGAAATGTCCAACCACCTCTTCTACTATTCAAGCTTACCTGATGCCGATAAAGAGGAAGGAACTGGCCCTCTCTTTCCAGTAGTGTAA 1284 46.88 MADVKLHGKWTSPYSARVKWALALKGVPFDYVEEDLANKSSLLLKYNPVYKKIPVLVHGENPLCESMIILEYIDETWPHNPLLPIDPHDRAVARFWIKFVEEMHPKIWTMFTTKGEEQEIAKKESFESLKIIEEHYLTGGKKFFGGDNIGMVDLAMGGISVWLPVFEEVLGFQLISASSFPKLKAWSKNFKEVTEIKENLPDHEAFLGFFKHKRLLRDPLKVFGSDIMLMILRNLHARSVALSLLVSHAWYDVASSDRLWSSMCEELWLRKAHIPRLSRSNRFSKLAAYSFSIKDSKRTCITKEDLCDHVWEFHFNSVAPEYWRNLDPYWKGTSPRMRRYFHKDGSQTADPDDQVWGGHECCYSIVTTRRVSDGNIRKHYVRINRWPIMSVSRKSDWSWEMSNHLFYYSSLPDADKEEGTGPLFPVV 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3795092 3798553 + BLOR00311 Blo01g00311 54751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00311 427 CDD GST_N_Tau 4 77 - -
Blo01g00311 427 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Blo01g00311 427 CDD GST_C_Tau 87 211 IPR045074 GO:0004364|GO:0006749
Blo01g00311 427 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 222 IPR010987 -
Blo01g00311 427 SFLD Glutathione Transferase (cytosolic) 1 214 IPR040079 -
Blo01g00311 427 Pfam Glutathione S-transferase, N-terminal domain 3 75 IPR004045 -
Blo01g00311 427 Gene3D Glutaredoxin 1 85 - -
Blo01g00311 427 SUPERFAMILY GST C-terminal domain-like 75 213 IPR036282 -
Blo01g00311 427 SFLD Main.3: Omega- and Tau-like 1 214 IPR045073 -
Blo01g00311 427 PANTHER F-BOX DOMAIN CONTAINING PROTEIN 214 426 - -
Blo01g00311 427 Pfam Glutathione S-transferase, C-terminal domain 112 190 IPR004046 -
Blo01g00311 427 Gene3D - 86 213 - -
Blo01g00311 427 SUPERFAMILY Thioredoxin-like 3 102 IPR036249 -
Blo01g00311 427 Gene3D - 214 331 - -
Blo01g00311 427 SUPERFAMILY F-box domain 218 332 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00311 - - - vvi:100251139 343.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00311 Blo-Chr1:3795092 Blo05g00454 Blo-Chr5:6453543 6.07E-63 dispersed
Blo01g00311 Blo-Chr1:3795092 Blo10g00695 Blo-Chr10:22298221 3.58E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g816 Blo01g00311 . . Bda08g00016 . . . Bma05g01266 . . . Cma14g01861 . . . Cpe08g00369 Cpe03g01558 Bhi01g00030 . . . . . . . . . . . . . . . . . Lsi05g01792 . . Cme06g00431 . . . . . . . . . Cmo06g01286 Cmo14g01905 . . . . . . . . . . . . . . . . . . . . . Csa03g01146 Chy06g00410 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010011 0 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00311 Blo_Chr01 FPKM 11.195652 10.166627 19.875856 15.881575 13.792853 13.235308 15.950945 26.24258 31.035854 30.665331